docrev 0.11.1 → 0.11.2

package/completions/rev.zsh

@@ -1,207 +1,207 @@
-#compdef rev
-
-# Zsh completion for rev (docrev)
-# Install: add to fpath or run:
-#   eval "$(rev completions zsh)"
-
-_rev() {
-    local -a commands build_formats doi_actions eq_actions help_topics journals preview_formats
-
-    commands=(
-        'build:Build PDF/DOCX/TEX from sections'
-        'new:Create new project from template'
-        'import:Import Word document'
-        'sections:Import to section files'
-        'extract:Extract text from Word'
-        'review:Interactive review TUI'
-        'status:Show annotation counts'
-        'comments:List comments'
-        'resolve:Mark comment as resolved'
-        'reply:Reply to comments'
-        'strip:Output clean markdown'
-        'refs:Show reference status'
-        'migrate:Convert hardcoded refs'
-        'config:Configure settings'
-        'install:Check dependencies'
-        'doi:DOI validation'
-        'citations:Validate citations'
-        'equations:Extract equations'
-        'figures:List figures'
-        'response:Generate response letter'
-        'anonymize:Prepare for blind review'
-        'validate:Check journal requirements'
-        'merge:Merge reviewer feedback'
-        'diff:Compare against git history'
-        'history:Show revision history'
-        'help:Show help'
-        'init:Initialize project'
-        'split:Split paper.md to sections'
-        'word-count:Show word counts per section'
-        'wc:Show word counts (alias)'
-        'stats:Show project statistics'
-        'search:Search across files'
-        'backup:Create timestamped backup'
-        'export:Export project as zip'
-        'preview:Build and open document'
-        'watch:Watch and auto-rebuild'
-        'lint:Check for issues'
-        'grammar:Check grammar and style'
-        'annotate:Add comments to DOCX'
-        'apply:Apply annotations as track changes'
-        'comment:Interactive comment mode'
-        'completions:Generate shell completions'
-    )
-
-    preview_formats=(
-        'pdf:Preview PDF'
-        'docx:Preview Word document'
-    )
-
-    build_formats=(
-        'pdf:Build PDF'
-        'docx:Build Word document'
-        'tex:Build LaTeX'
-        'all:Build all formats'
-    )
-
-    doi_actions=(
-        'check:Validate DOIs'
-        'lookup:Find missing DOIs'
-        'fetch:Get BibTeX from DOI'
-        'add:Add citation by DOI'
-    )
-
-    eq_actions=(
-        'list:List equations'
-        'extract:Extract to file'
-        'convert:Convert to Word'
-        'from-word:Extract from Word'
-    )
-
-    help_topics=(
-        'workflow:Review workflow'
-        'syntax:CriticMarkup syntax'
-        'commands:All commands'
-    )
-
-    journals=(
-        'nature:Nature journal'
-        'science:Science journal'
-        'plos:PLOS ONE'
-        'cell:Cell journal'
-        'ecology:Ecology journals'
-        'custom:Custom profile'
-    )
-
-    case "$words[2]" in
-        build)
-            _describe -t formats 'format' build_formats
-            _arguments \
-                '--toc[Include table of contents]' \
-                '--show-changes[Show track changes in DOCX]' \
-                '--clean[Clean build files]'
-            ;;
-        new)
-            _arguments \
-                '--list[List templates]' \
-                '--template[Template name]:template:(paper minimal thesis proposal)'
-            ;;
-        doi)
-            _describe -t actions 'action' doi_actions
-            ;;
-        equations|eq)
-            _describe -t actions 'action' eq_actions
-            ;;
-        validate)
-            _arguments \
-                '--list[List journals]' \
-                '--journal[Journal name]:journal:($journals)'
-            ;;
-        help)
-            _describe -t topics 'topic' help_topics
-            ;;
-        config)
-            _values 'setting' 'user[Set user name]'
-            ;;
-        word-count|wc)
-            _arguments \
-                '--limit[Word limit]:number:' \
-                '--journal[Use journal word limit]:journal:'
-            ;;
-        preview)
-            _describe -t formats 'format' preview_formats
-            ;;
-        watch)
-            _arguments \
-                '--no-open[Do not open after build]'
-            _values 'format' 'pdf' 'docx' 'all'
-            ;;
-        lint)
-            _arguments \
-                '--fix[Auto-fix issues]'
-            ;;
-        grammar)
-            _arguments \
-                '--learn[Add word to dictionary]:word:' \
-                '--forget[Remove from dictionary]:word:' \
-                '--list[List dictionary words]' \
-                '--rules[List grammar rules]' \
-                '--no-scientific[Disable science rules]' \
-                '--severity[Minimum severity]:level:(error warning info)'
-            _files -g '*.md'
-            ;;
-        annotate)
-            _arguments \
-                '-m[Comment message]:text:' \
-                '-s[Search text]:text:' \
-                '-a[Author name]:name:'
-            _files -g '*.docx'
-            ;;
-        apply)
-            _arguments \
-                '-a[Author name]:name:'
-            _files -g '*.md'
-            ;;
-        comment)
-            _arguments \
-                '-a[Author name]:name:'
-            _files -g '*.docx'
-            ;;
-        completions)
-            _values 'shell' 'bash' 'zsh'
-            ;;
-        import|sections|extract|review|status|comments|strip|refs|migrate|figures|response|anonymize|split|search|stats)
-            _files -g '*.md' -g '*.docx'
-            ;;
-        resolve|reply)
-            _arguments \
-                '-n[Comment number]:number:' \
-                '-m[Reply message]:message:'
-            _files -g '*.md'
-            ;;
-        check|lookup|add|citations)
-            _files -g '*.bib'
-            ;;
-        merge)
-            _files -g '*.md' -g '*.docx'
-            ;;
-        backup)
-            _arguments \
-                '--name[Custom backup name]:name:' \
-                '--output[Output directory]:dir:_files -/'
-            ;;
-        export)
-            _arguments \
-                '--output[Output filename]:file:' \
-                '--include-output[Include built files]'
-            ;;
-        *)
-            _describe -t commands 'command' commands
-            _arguments \
-                '--help[Show help]' \
-                '--version[Show version]'
-            ;;
-    esac
-}
-
-_rev "$@"
+#compdef rev
+
+# Zsh completion for rev (docrev)
+# Install: add to fpath or run:
+#   eval "$(rev completions zsh)"
+
+_rev() {
+    local -a commands build_formats doi_actions eq_actions help_topics journals preview_formats
+
+    commands=(
+        'build:Build PDF/DOCX/TEX from sections'
+        'new:Create new project from template'
+        'import:Import Word document'
+        'sections:Import to section files'
+        'extract:Extract text from Word'
+        'review:Interactive review TUI'
+        'status:Show annotation counts'
+        'comments:List comments'
+        'resolve:Mark comment as resolved'
+        'reply:Reply to comments'
+        'strip:Output clean markdown'
+        'refs:Show reference status'
+        'migrate:Convert hardcoded refs'
+        'config:Configure settings'
+        'install:Check dependencies'
+        'doi:DOI validation'
+        'citations:Validate citations'
+        'equations:Extract equations'
+        'figures:List figures'
+        'response:Generate response letter'
+        'anonymize:Prepare for blind review'
+        'validate:Check journal requirements'
+        'merge:Merge reviewer feedback'
+        'diff:Compare against git history'
+        'history:Show revision history'
+        'help:Show help'
+        'init:Initialize project'
+        'split:Split paper.md to sections'
+        'word-count:Show word counts per section'
+        'wc:Show word counts (alias)'
+        'stats:Show project statistics'
+        'search:Search across files'
+        'backup:Create timestamped backup'
+        'export:Export project as zip'
+        'preview:Build and open document'
+        'watch:Watch and auto-rebuild'
+        'lint:Check for issues'
+        'grammar:Check grammar and style'
+        'annotate:Add comments to DOCX'
+        'apply:Apply annotations as track changes'
+        'comment:Interactive comment mode'
+        'completions:Generate shell completions'
+    )
+
+    preview_formats=(
+        'pdf:Preview PDF'
+        'docx:Preview Word document'
+    )
+
+    build_formats=(
+        'pdf:Build PDF'
+        'docx:Build Word document'
+        'tex:Build LaTeX'
+        'all:Build all formats'
+    )
+
+    doi_actions=(
+        'check:Validate DOIs'
+        'lookup:Find missing DOIs'
+        'fetch:Get BibTeX from DOI'
+        'add:Add citation by DOI'
+    )
+
+    eq_actions=(
+        'list:List equations'
+        'extract:Extract to file'
+        'convert:Convert to Word'
+        'from-word:Extract from Word'
+    )
+
+    help_topics=(
+        'workflow:Review workflow'
+        'syntax:CriticMarkup syntax'
+        'commands:All commands'
+    )
+
+    journals=(
+        'nature:Nature journal'
+        'science:Science journal'
+        'plos:PLOS ONE'
+        'cell:Cell journal'
+        'ecology:Ecology journals'
+        'custom:Custom profile'
+    )
+
+    case "$words[2]" in
+        build)
+            _describe -t formats 'format' build_formats
+            _arguments \
+                '--toc[Include table of contents]' \
+                '--show-changes[Show track changes in DOCX]' \
+                '--clean[Clean build files]'
+            ;;
+        new)
+            _arguments \
+                '--list[List templates]' \
+                '--template[Template name]:template:(paper minimal thesis proposal)'
+            ;;
+        doi)
+            _describe -t actions 'action' doi_actions
+            ;;
+        equations|eq)
+            _describe -t actions 'action' eq_actions
+            ;;
+        validate)
+            _arguments \
+                '--list[List journals]' \
+                '--journal[Journal name]:journal:($journals)'
+            ;;
+        help)
+            _describe -t topics 'topic' help_topics
+            ;;
+        config)
+            _values 'setting' 'user[Set user name]'
+            ;;
+        word-count|wc)
+            _arguments \
+                '--limit[Word limit]:number:' \
+                '--journal[Use journal word limit]:journal:'
+            ;;
+        preview)
+            _describe -t formats 'format' preview_formats
+            ;;
+        watch)
+            _arguments \
+                '--no-open[Do not open after build]'
+            _values 'format' 'pdf' 'docx' 'all'
+            ;;
+        lint)
+            _arguments \
+                '--fix[Auto-fix issues]'
+            ;;
+        grammar)
+            _arguments \
+                '--learn[Add word to dictionary]:word:' \
+                '--forget[Remove from dictionary]:word:' \
+                '--list[List dictionary words]' \
+                '--rules[List grammar rules]' \
+                '--no-scientific[Disable science rules]' \
+                '--severity[Minimum severity]:level:(error warning info)'
+            _files -g '*.md'
+            ;;
+        annotate)
+            _arguments \
+                '-m[Comment message]:text:' \
+                '-s[Search text]:text:' \
+                '-a[Author name]:name:'
+            _files -g '*.docx'
+            ;;
+        apply)
+            _arguments \
+                '-a[Author name]:name:'
+            _files -g '*.md'
+            ;;
+        comment)
+            _arguments \
+                '-a[Author name]:name:'
+            _files -g '*.docx'
+            ;;
+        completions)
+            _values 'shell' 'bash' 'zsh'
+            ;;
+        import|sections|extract|review|status|comments|strip|refs|migrate|figures|response|anonymize|split|search|stats)
+            _files -g '*.md' -g '*.docx'
+            ;;
+        resolve|reply)
+            _arguments \
+                '-n[Comment number]:number:' \
+                '-m[Reply message]:message:'
+            _files -g '*.md'
+            ;;
+        check|lookup|add|citations)
+            _files -g '*.bib'
+            ;;
+        merge)
+            _files -g '*.md' -g '*.docx'
+            ;;
+        backup)
+            _arguments \
+                '--name[Custom backup name]:name:' \
+                '--output[Output directory]:dir:_files -/'
+            ;;
+        export)
+            _arguments \
+                '--output[Output filename]:file:' \
+                '--include-output[Include built files]'
+            ;;
+        *)
+            _describe -t commands 'command' commands
+            _arguments \
+                '--help[Show help]' \
+                '--version[Show version]'
+            ;;
+    esac
+}
+
+_rev "$@"

package/dist/lib/build.d.ts

@@ -21,6 +21,15 @@ export interface CrossrefConfig {
 export interface PdfConfig {
     template?: string | null;
     headerIncludes?: string | null;
+    /**
+     * Path (relative to the project dir, or absolute) to a LaTeX preamble file
+     * injected via pandoc's `-H`. Use for custom fonts, `fancyhdr` running
+     * headers, `lineno` line numbers, etc. A missing file is reported, not
+     * silently dropped.
+     */
+    header?: string | null;
+    /** Second LaTeX preamble file, injected via `-H` after {@link header}. */
+    footer?: string | null;
     documentclass?: string;
     fontsize?: string;
     geometry?: string;
@@ -335,6 +344,25 @@ export declare function translateRawLatexFigures(content: string): {
  * won't survive the docx build. Returns null when there's nothing to warn about.
  */
 export declare function collectRawLatexFigureWarning(directory: string, config: BuildConfig): string | null;
+/**
+ * Resolve user-supplied LaTeX preamble sources into files to inject via
+ * pandoc's `-H`. Covers `pdf.header` / `pdf.footer` (file paths, relative to
+ * the project dir) and an inline `header-includes` string (written to a temp
+ * `.tex` in the project dir). Pandoc runs with cwd = the project dir, so
+ * returned paths are left relative to it.
+ *
+ * A `pdf.header`/`pdf.footer` file that does not exist is reported in
+ * `warnings` rather than dropped silently — the fail-open loss of the entire
+ * user preamble was the bug this addresses.
+ *
+ * @returns headerArgs — file paths to pass after `-H`; tempFiles — paths the
+ *   caller must clean up; warnings — human-readable notices for missing files.
+ */
+export declare function resolveLatexPreambleSources(directory: string, config: BuildConfig): {
+    headerArgs: string[];
+    tempFiles: string[];
+    warnings: string[];
+};
 /**
  * Build pandoc arguments for format.
  *

package/dist/lib/build.d.ts.map

@@ -1 +1 @@
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package/dist/lib/build.js

@@ -986,6 +986,69 @@ export function collectRawLatexFigureWarning(directory, config) {
         return null;
     return formatRawLatexFigureWarning(all, translateEnabled);
 }
+/**
+ * Collect an inline `header-includes` LaTeX string from the config. Pandoc's
+ * native metadata key is `header-includes`; accept it at the top level (where
+ * pandoc documents it) and under `pdf`. String or list of strings; entries are
+ * joined with newlines. Returns null when nothing is set.
+ */
+function getInlineHeaderIncludes(config) {
+    const top = config['header-includes'];
+    const pdf = config.pdf?.['header-includes'];
+    const parts = [];
+    for (const value of [top, pdf]) {
+        if (typeof value === 'string' && value.trim()) {
+            parts.push(value);
+        }
+        else if (Array.isArray(value)) {
+            for (const item of value) {
+                if (typeof item === 'string' && item.trim())
+                    parts.push(item);
+            }
+        }
+    }
+    return parts.length > 0 ? parts.join('\n') : null;
+}
+/**
+ * Resolve user-supplied LaTeX preamble sources into files to inject via
+ * pandoc's `-H`. Covers `pdf.header` / `pdf.footer` (file paths, relative to
+ * the project dir) and an inline `header-includes` string (written to a temp
+ * `.tex` in the project dir). Pandoc runs with cwd = the project dir, so
+ * returned paths are left relative to it.
+ *
+ * A `pdf.header`/`pdf.footer` file that does not exist is reported in
+ * `warnings` rather than dropped silently — the fail-open loss of the entire
+ * user preamble was the bug this addresses.
+ *
+ * @returns headerArgs — file paths to pass after `-H`; tempFiles — paths the
+ *   caller must clean up; warnings — human-readable notices for missing files.
+ */
+export function resolveLatexPreambleSources(directory, config) {
+    const headerArgs = [];
+    const tempFiles = [];
+    const warnings = [];
+    const pdf = (config.pdf || {});
+    for (const key of ['header', 'footer']) {
+        const value = pdf[key];
+        if (!value || typeof value !== 'string')
+            continue;
+        const abs = path.isAbsolute(value) ? value : path.join(directory, value);
+        if (fs.existsSync(abs)) {
+            headerArgs.push(value);
+        }
+        else {
+            warnings.push(`pdf.${key}: LaTeX preamble file not found — ${value} (not applied)`);
+        }
+    }
+    const inline = getInlineHeaderIncludes(config);
+    if (inline) {
+        const inlinePath = path.join(directory, '.header-includes.tex');
+        fs.writeFileSync(inlinePath, inline.endsWith('\n') ? inline : inline + '\n', 'utf-8');
+        tempFiles.push(inlinePath);
+        headerArgs.push(path.basename(inlinePath));
+    }
+    return { headerArgs, tempFiles, warnings };
+}
 /**
  * Build pandoc arguments for format.
  *
@@ -1094,10 +1157,10 @@ export function buildPandocArgs(format, config, outputPath) {
         }
         // Fit images within slide bounds (default: true)
         if (beamer.fit_images !== false) {
-            const fitImagesHeader = `\\makeatletter
-\\def\\maxwidth{\\ifdim\\Gin@nat@width>\\linewidth\\linewidth\\else\\Gin@nat@width\\fi}
-\\def\\maxheight{\\ifdim\\Gin@nat@height>0.75\\textheight 0.75\\textheight\\else\\Gin@nat@height\\fi}
-\\makeatother
+            const fitImagesHeader = `\\makeatletter
+\\def\\maxwidth{\\ifdim\\Gin@nat@width>\\linewidth\\linewidth\\else\\Gin@nat@width\\fi}
+\\def\\maxheight{\\ifdim\\Gin@nat@height>0.75\\textheight 0.75\\textheight\\else\\Gin@nat@height\\fi}
+\\makeatother
 \\setkeys{Gin}{width=\\maxwidth,height=\\maxheight,keepaspectratio}`;
             args.push('-V', `header-includes=${fitImagesHeader}`);
         }
@@ -1335,6 +1398,20 @@ export async function runPandoc(inputPath, format, config, options = {}) {
             args.push('-H', path.basename(preamblePath));
         }
     }
+    // User-supplied LaTeX preamble: pdf.header / pdf.footer (file paths) and an
+    // inline header-includes block, injected through pandoc's -H channel — the
+    // same mechanism the macros preamble and annotated-comments path use. Only
+    // the LaTeX family consumes a preamble.
+    if (format === 'pdf' || format === 'tex' || format === 'beamer') {
+        const { headerArgs, tempFiles, warnings } = resolveLatexPreambleSources(directory, config);
+        for (const warning of warnings) {
+            console.warn(`Warning: ${warning}`);
+        }
+        for (const headerFile of headerArgs) {
+            args.push('-H', headerFile);
+        }
+        macroTempFiles.push(...tempFiles);
+    }
     // Add crossref metadata file if exists (skip for slides - they don't use crossref)
     if (format !== 'beamer' && format !== 'pptx') {
         const crossrefPath = path.join(directory, 'crossref.yaml');