diff-grok 1.1.0 → 1.2.0

package/THIRD_PARTY_LICENSES

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+Third-Party Licenses
+====================
+
+This file documents the licenses for third-party code included in or adapted
+by this project.
+
+
+================================================================================
+liblsoda
+================================================================================
+
+Source:       https://github.com/sdwfrost/liblsoda
+License:      MIT
+Files:        src/solver-tools/lsoda/
+
+The LSODA solver implementation in src/solver-tools/lsoda/ is a TypeScript port
+of the liblsoda C library by Simon Frost, which itself is derived from earlier
+work tracing back to the original Fortran LSODA algorithm.
+
+Provenance chain:
+
+  1. Linda Petzold & Alan Hindmarsh — original LSODA algorithm (Fortran, 1983)
+     Part of ODEPACK. Public domain (U.S. government work).
+     References:
+       - A. C. Hindmarsh, "ODEPACK, A Systematized Collection of ODE Solvers,"
+         Scientific Computing, 1983.
+       - L. Petzold, "Automatic Selection of Methods for Solving Stiff and
+         Nonstiff Systems of Ordinary Differential Equations," SIAM J. Sci.
+         Stat. Comput. 4, 1983.
+
+  2. Heng Li (lh3) — C translation and refactoring
+
+  3. Yu Feng (rainwoodman) — reentrant C refactoring (2011)
+     Copyright (c) 2011 Yu Feng, McWilliam Cosmology Center, Carnegie Mellon
+     University. Released under MIT/X11 license.
+
+  4. Simon Frost (sdwfrost) — shared library packaging (2016)
+     Copyright (c) 2016 Simon Frost. Released under MIT license.
+
+  5. Datagrok — TypeScript port (2025–2026)
+     Copyright (c) 2026 Datagrok. Released under MIT license.
+
+Full text of the upstream MIT license (from liblsoda):
+
+  MIT License
+
+  Copyright (c) 2016 Simon Frost
+
+  Permission is hereby granted, free of charge, to any person obtaining a copy
+  of this software and associated documentation files (the "Software"), to deal
+  in the Software without restriction, including without limitation the rights
+  to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+  copies of the Software, and to permit persons to whom the Software is
+  furnished to do so, subject to the following conditions:
+
+  The above copyright notice and this permission notice shall be included in all
+  copies or substantial portions of the Software.
+
+  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+  IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+  AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+  SOFTWARE.
+
+
+================================================================================
+SUNDIALS CVODE
+================================================================================
+
+Source:       https://github.com/LLNL/sundials
+License:      BSD-3-Clause
+Files:        src/solver-tools/cvode/
+
+The CVODE solver implementation in src/solver-tools/cvode/ is a TypeScript port
+of the CVODE module from the SUNDIALS library (SUite of Nonlinear and
+DIfferential/ALgebraic equation Solvers) v7.5.0, developed at the Center for
+Applied Scientific Computing, Lawrence Livermore National Laboratory.
+
+CVODE is a solver for stiff and nonstiff ODE systems using variable-order,
+variable-step multistep methods: Adams-Moulton (nonstiff) and BDF (stiff).
+
+Provenance chain:
+
+  1. Lawrence Livermore National Security — original CVODE solver (C, 2002)
+     Part of the SUNDIALS suite. Developed under U.S. Department of Energy
+     Contract DE-AC52-07NA27344.
+     LLNL code release number: UCRL-CODE-155951
+
+  2. Lawrence Livermore National Security and Southern Methodist University —
+     continued development (2013–2025)
+
+  3. Lawrence Livermore National Security, University of Maryland Baltimore
+     County, and the SUNDIALS contributors — current maintainers (2025)
+     Released under the BSD-3-Clause license.
+
+  4. Datagrok — TypeScript port (2025–2026)
+     Copyright (c) 2026 Datagrok. Released under MIT license.
+
+Full text of the upstream BSD-3-Clause license:
+
+  BSD 3-Clause License
+
+  Copyright (c) 2025, Lawrence Livermore National Security, University of
+  Maryland Baltimore County, and the SUNDIALS contributors.
+  Copyright (c) 2013-2025, Lawrence Livermore National Security and Southern
+  Methodist University.
+  Copyright (c) 2002-2013, Lawrence Livermore National Security.
+  All rights reserved.
+
+  Redistribution and use in source and binary forms, with or without
+  modification, are permitted provided that the following conditions are met:
+
+  * Redistributions of source code must retain the above copyright notice, this
+    list of conditions and the following disclaimer.
+
+  * Redistributions in binary form must reproduce the above copyright notice,
+    this list of conditions and the following disclaimer in the documentation
+    and/or other materials provided with the distribution.
+
+  * Neither the name of the copyright holder nor the names of its
+    contributors may be used to endorse or promote products derived from
+    this software without specific prior written permission.
+
+  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+  AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+  IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+  DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+  FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+  DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+  SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+  CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+  OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+  OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

package/docs/.nojekyll

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e={ational:"ate",tional:"tion",enci:"ence",anci:"ance",izer:"ize",bli:"ble",alli:"al",entli:"ent",eli:"e",ousli:"ous",ization:"ize",ation:"ate",ator:"ate",alism:"al",iveness:"ive",fulness:"ful",ousness:"ous",aliti:"al",iviti:"ive",biliti:"ble",logi:"log"},n={icate:"ic",ative:"",alize:"al",iciti:"ic",ical:"ic",ful:"",ness:""},r="[^aeiou]",i="[aeiouy]",s=r+"[^aeiouy]*",o=i+"[aeiou]*",a="^("+s+")?"+o+s,c="^("+s+")?"+o+s+"("+o+")?$",l="^("+s+")?"+o+s+o+s,d="^("+s+")?"+i,f=new RegExp(a),p=new RegExp(l),v=new RegExp(c),x=new RegExp(d),w=/^(.+?)(ss|i)es$/,m=/^(.+?)([^s])s$/,g=/^(.+?)eed$/,T=/^(.+?)(ed|ing)$/,L=/.$/,C=/(at|bl|iz)$/,O=new RegExp("([^aeiouylsz])\\1$"),j=new 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b=h.exec(u);y=b[1],P=b[2],h=f,h.test(y)&&(u=y+n[P])}if(h=B,E=z,h.test(u)){var b=h.exec(u);y=b[1],h=p,h.test(y)&&(u=y)}else if(E.test(u)){var b=E.exec(u);y=b[1]+b[2],E=p,E.test(y)&&(u=y)}if(h=_,h.test(u)){var b=h.exec(u);y=b[1],h=p,E=v,Q=J,(h.test(y)||E.test(y)&&!Q.test(y))&&(u=y)}return h=U,E=p,h.test(u)&&E.test(u)&&(h=L,u=u.replace(h,"")),k=="y"&&(u=k.toLowerCase()+u.substr(1)),u};return function(A){return A.update(V)}})(),t.Pipeline.registerFunction(t.stemmer,"stemmer");t.generateStopWordFilter=function(e){var n=e.reduce(function(r,i){return r[i]=i,r},{});return function(r){if(r&&n[r.toString()]!==r.toString())return r}},t.stopWordFilter=t.generateStopWordFilter(["a","able","about","across","after","all","almost","also","am","among","an","and","any","are","as","at","be","because","been","but","by","can","cannot","could","dear","did","do","does","either","else","ever","every","for","from","get","got","had","has","have","he","her","hers","him","his","how","however","i","if","in","into","is","it","its","just","least","let","like","likely","may","me","might","most","must","my","neither","no","nor","not","of","off","often","on","only","or","other","our","own","rather","said","say","says","she","should","since","so","some","than","that","the","their","them","then","there","these","they","this","tis","to","too","twas","us","wants","was","we","were","what","when","where","which","while","who","whom","why","will","with","would","yet","you","your"]),t.Pipeline.registerFunction(t.stopWordFilter,"stopWordFilter");t.trimmer=function(e){return e.update(function(n){return n.replace(/^\W+/,"").replace(/\W+$/,"")})},t.Pipeline.registerFunction(t.trimmer,"trimmer");t.TokenSet=function(){this.final=!1,this.edges={},this.id=t.TokenSet._nextId,t.TokenSet._nextId+=1},t.TokenSet._nextId=1,t.TokenSet.fromArray=function(e){for(var n=new t.TokenSet.Builder,r=0,i=e.length;r<i;r++)n.insert(e[r]);return n.finish(),n.root},t.TokenSet.fromClause=function(e){return"editDistance"in e?t.TokenSet.fromFuzzyString(e.term,e.editDistance):t.TokenSet.fromString(e.term)},t.TokenSet.fromFuzzyString=function(e,n){for(var r=new t.TokenSet,i=[{node:r,editsRemaining:n,str:e}];i.length;){var s=i.pop();if(s.str.length>0){var o=s.str.charAt(0),a;o in s.node.edges?a=s.node.edges[o]:(a=new t.TokenSet,s.node.edges[o]=a),s.str.length==1&&(a.final=!0),i.push({node:a,editsRemaining:s.editsRemaining,str:s.str.slice(1)})}if(s.editsRemaining!=0){if("*"in s.node.edges)var c=s.node.edges["*"];else{var c=new t.TokenSet;s.node.edges["*"]=c}if(s.str.length==0&&(c.final=!0),i.push({node:c,editsRemaining:s.editsRemaining-1,str:s.str}),s.str.length>1&&i.push({node:s.node,editsRemaining:s.editsRemaining-1,str:s.str.slice(1)}),s.str.length==1&&(s.node.final=!0),s.str.length>=1){if("*"in s.node.edges)var l=s.node.edges["*"];else{var l=new t.TokenSet;s.node.edges["*"]=l}s.str.length==1&&(l.final=!0),i.push({node:l,editsRemaining:s.editsRemaining-1,str:s.str.slice(1)})}if(s.str.length>1){var d=s.str.charAt(0),f=s.str.charAt(1),p;f in s.node.edges?p=s.node.edges[f]:(p=new t.TokenSet,s.node.edges[f]=p),s.str.length==1&&(p.final=!0),i.push({node:p,editsRemaining:s.editsRemaining-1,str:d+s.str.slice(2)})}}}return r},t.TokenSet.fromString=function(e){for(var n=new t.TokenSet,r=n,i=0,s=e.length;i<s;i++){var o=e[i],a=i==s-1;if(o=="*")n.edges[o]=n,n.final=a;else{var c=new t.TokenSet;c.final=a,n.edges[o]=c,n=c}}return r},t.TokenSet.prototype.toArray=function(){for(var e=[],n=[{prefix:"",node:this}];n.length;){var r=n.pop(),i=Object.keys(r.node.edges),s=i.length;r.node.final&&(r.prefix.charAt(0),e.push(r.prefix));for(var o=0;o<s;o++){var a=i[o];n.push({prefix:r.prefix.concat(a),node:r.node.edges[a]})}}return e},t.TokenSet.prototype.toString=function(){if(this._str)return this._str;for(var e=this.final?"1":"0",n=Object.keys(this.edges).sort(),r=n.length,i=0;i<r;i++){var s=n[i],o=this.edges[s];e=e+s+o.id}return e},t.TokenSet.prototype.intersect=function(e){for(var n=new t.TokenSet,r=void 0,i=[{qNode:e,output:n,node:this}];i.length;){r=i.pop();for(var s=Object.keys(r.qNode.edges),o=s.length,a=Object.keys(r.node.edges),c=a.length,l=0;l<o;l++)for(var d=s[l],f=0;f<c;f++){var p=a[f];if(p==d||d=="*"){var v=r.node.edges[p],x=r.qNode.edges[d],w=v.final&&x.final,m=void 0;p in r.output.edges?(m=r.output.edges[p],m.final=m.final||w):(m=new t.TokenSet,m.final=w,r.output.edges[p]=m),i.push({qNode:x,output:m,node:v})}}}return n},t.TokenSet.Builder=function(){this.previousWord="",this.root=new t.TokenSet,this.uncheckedNodes=[],this.minimizedNodes={}},t.TokenSet.Builder.prototype.insert=function(e){var n,r=0;if(e<this.previousWord)throw new Error("Out of order word insertion");for(var i=0;i<e.length&&i<this.previousWord.length&&e[i]==this.previousWord[i];i++)r++;this.minimize(r),this.uncheckedNodes.length==0?n=this.root:n=this.uncheckedNodes[this.uncheckedNodes.length-1].child;for(var i=r;i<e.length;i++){var s=new t.TokenSet,o=e[i];n.edges[o]=s,this.uncheckedNodes.push({parent:n,char:o,child:s}),n=s}n.final=!0,this.previousWord=e},t.TokenSet.Builder.prototype.finish=function(){this.minimize(0)},t.TokenSet.Builder.prototype.minimize=function(e){for(var n=this.uncheckedNodes.length-1;n>=e;n--){var r=this.uncheckedNodes[n],i=r.child.toString();i in this.minimizedNodes?r.parent.edges[r.char]=this.minimizedNodes[i]:(r.child._str=i,this.minimizedNodes[i]=r.child),this.uncheckedNodes.pop()}};t.Index=function(e){this.invertedIndex=e.invertedIndex,this.fieldVectors=e.fieldVectors,this.tokenSet=e.tokenSet,this.fields=e.fields,this.pipeline=e.pipeline},t.Index.prototype.search=function(e){return this.query(function(n){var r=new t.QueryParser(e,n);r.parse()})},t.Index.prototype.query=function(e){for(var n=new t.Query(this.fields),r=Object.create(null),i=Object.create(null),s=Object.create(null),o=Object.create(null),a=Object.create(null),c=0;c<this.fields.length;c++)i[this.fields[c]]=new t.Vector;e.call(n,n);for(var c=0;c<n.clauses.length;c++){var l=n.clauses[c],d=null,f=t.Set.empty;l.usePipeline?d=this.pipeline.runString(l.term,{fields:l.fields}):d=[l.term];for(var p=0;p<d.length;p++){var v=d[p];l.term=v;var x=t.TokenSet.fromClause(l),w=this.tokenSet.intersect(x).toArray();if(w.length===0&&l.presence===t.Query.presence.REQUIRED){for(var m=0;m<l.fields.length;m++){var g=l.fields[m];o[g]=t.Set.empty}break}for(var T=0;T<w.length;T++)for(var L=w[T],C=this.invertedIndex[L],O=C._index,m=0;m<l.fields.length;m++){var g=l.fields[m],j=C[g],N=Object.keys(j),q=L+"/"+g,W=new t.Set(N);if(l.presence==t.Query.presence.REQUIRED&&(f=f.union(W),o[g]===void 0&&(o[g]=t.Set.complete)),l.presence==t.Query.presence.PROHIBITED){a[g]===void 0&&(a[g]=t.Set.empty),a[g]=a[g].union(W);continue}if(i[g].upsert(O,l.boost,function(Ue,Je){return Ue+Je}),!s[q]){for(var B=0;B<N.length;B++){var z=N[B],_=new t.FieldRef(z,g),U=j[z],J;(J=r[_])===void 0?r[_]=new t.MatchData(L,g,U):J.add(L,g,U)}s[q]=!0}}}if(l.presence===t.Query.presence.REQUIRED)for(var m=0;m<l.fields.length;m++){var g=l.fields[m];o[g]=o[g].intersect(f)}}for(var V=t.Set.complete,A=t.Set.empty,c=0;c<this.fields.length;c++){var g=this.fields[c];o[g]&&(V=V.intersect(o[g])),a[g]&&(A=A.union(a[g]))}var u=Object.keys(r),y=[],P=Object.create(null);if(n.isNegated()){u=Object.keys(this.fieldVectors);for(var c=0;c<u.length;c++){var _=u[c],k=t.FieldRef.fromString(_);r[_]=new t.MatchData}}for(var c=0;c<u.length;c++){var k=t.FieldRef.fromString(u[c]),h=k.docRef;if(V.contains(h)&&!A.contains(h)){var E=this.fieldVectors[k],Q=i[k.fieldName].similarity(E),H;if((H=P[h])!==void 0)H.score+=Q,H.matchData.combine(r[k]);else{var b={ref:h,score:Q,matchData:r[k]};P[h]=b,y.push(b)}}}return y.sort(function(We,ze){return ze.score-We.score})},t.Index.prototype.toJSON=function(){var e=Object.keys(this.invertedIndex).sort().map(function(r){return[r,this.invertedIndex[r]]},this),n=Object.keys(this.fieldVectors).map(function(r){return[r,this.fieldVectors[r].toJSON()]},this);return{version:t.version,fields:this.fields,fieldVectors:n,invertedIndex:e,pipeline:this.pipeline.toJSON()}},t.Index.load=function(e){var n={},r={},i=e.fieldVectors,s=Object.create(null),o=e.invertedIndex,a=new 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Current version of lunr '"+t.version+"' does not match serialized index '"+e.version+"'");for(var l=0;l<i.length;l++){var d=i[l],f=d[0],p=d[1];r[f]=new t.Vector(p)}for(var l=0;l<o.length;l++){var d=o[l],v=d[0],x=d[1];a.insert(v),s[v]=x}return a.finish(),n.fields=e.fields,n.fieldVectors=r,n.invertedIndex=s,n.tokenSet=a.root,n.pipeline=c,new t.Index(n)};t.Builder=function(){this._ref="id",this._fields=Object.create(null),this._documents=Object.create(null),this.invertedIndex=Object.create(null),this.fieldTermFrequencies={},this.fieldLengths={},this.tokenizer=t.tokenizer,this.pipeline=new t.Pipeline,this.searchPipeline=new t.Pipeline,this.documentCount=0,this._b=.75,this._k1=1.2,this.termIndex=0,this.metadataWhitelist=[]},t.Builder.prototype.ref=function(e){this._ref=e},t.Builder.prototype.field=function(e,n){if(/\//.test(e))throw new RangeError("Field '"+e+"' contains illegal character 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T=this.metadataWhitelist[g],L=x.metadata[T];this.invertedIndex[x][o][r][T]==null&&(this.invertedIndex[x][o][r][T]=[]),this.invertedIndex[x][o][r][T].push(L)}}}},t.Builder.prototype.calculateAverageFieldLengths=function(){for(var e=Object.keys(this.fieldLengths),n=e.length,r={},i={},s=0;s<n;s++){var o=t.FieldRef.fromString(e[s]),a=o.fieldName;i[a]||(i[a]=0),i[a]+=1,r[a]||(r[a]=0),r[a]+=this.fieldLengths[o]}for(var c=Object.keys(this._fields),s=0;s<c.length;s++){var l=c[s];r[l]=r[l]/i[l]}this.averageFieldLength=r},t.Builder.prototype.createFieldVectors=function(){for(var e={},n=Object.keys(this.fieldTermFrequencies),r=n.length,i=Object.create(null),s=0;s<r;s++){for(var o=t.FieldRef.fromString(n[s]),a=o.fieldName,c=this.fieldLengths[o],l=new t.Vector,d=this.fieldTermFrequencies[o],f=Object.keys(d),p=f.length,v=this._fields[a].boost||1,x=this._documents[o.docRef].boost||1,w=0;w<p;w++){var m=f[w],g=d[m],T=this.invertedIndex[m]._index,L,C,O;i[m]===void 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n=e.peekLexeme();if(n!=null)switch(n.type){case t.QueryLexer.PRESENCE:return t.QueryParser.parsePresence;case t.QueryLexer.FIELD:return t.QueryParser.parseField;case t.QueryLexer.TERM:return t.QueryParser.parseTerm;default:var r="expected either a field or a term, found "+n.type;throw n.str.length>=1&&(r+=" with value '"+n.str+"'"),new t.QueryParseError(r,n.start,n.end)}},t.QueryParser.parsePresence=function(e){var n=e.consumeLexeme();if(n!=null){switch(n.str){case"-":e.currentClause.presence=t.Query.presence.PROHIBITED;break;case"+":e.currentClause.presence=t.Query.presence.REQUIRED;break;default:var r="unrecognised presence operator'"+n.str+"'";throw new t.QueryParseError(r,n.start,n.end)}var i=e.peekLexeme();if(i==null){var r="expecting term or field, found nothing";throw new t.QueryParseError(r,n.start,n.end)}switch(i.type){case t.QueryLexer.FIELD:return t.QueryParser.parseField;case t.QueryLexer.TERM:return t.QueryParser.parseTerm;default:var r="expecting term or field, found 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+/*! Bundled license information:
+
+lunr/lunr.js:
+  (**
+   * lunr - http://lunrjs.com - A bit like Solr, but much smaller and not as bright - 2.3.9
+   * Copyright (C) 2020 Oliver Nightingale
+   * @license MIT
+   *)
+  (*!
+   * lunr.utils
+   * Copyright (C) 2020 Oliver Nightingale
+   *)
+  (*!
+   * lunr.Set
+   * Copyright (C) 2020 Oliver Nightingale
+   *)
+  (*!
+   * lunr.tokenizer
+   * Copyright (C) 2020 Oliver Nightingale
+   *)
+  (*!
+   * lunr.Pipeline
+   * Copyright (C) 2020 Oliver Nightingale
+   *)
+  (*!
+   * lunr.Vector
+   * Copyright (C) 2020 Oliver Nightingale
+   *)
+  (*!
+   * lunr.stemmer
+   * Copyright (C) 2020 Oliver Nightingale
+   * Includes code from - http://tartarus.org/~martin/PorterStemmer/js.txt
+   *)
+  (*!
+   * lunr.stopWordFilter
+   * Copyright (C) 2020 Oliver Nightingale
+   *)
+  (*!
+   * lunr.trimmer
+   * Copyright (C) 2020 Oliver Nightingale
+   *)
+  (*!
+   * lunr.TokenSet
+   * Copyright (C) 2020 Oliver Nightingale
+   *)
+  (*!
+   * lunr.Index
+   * Copyright (C) 2020 Oliver Nightingale
+   *)
+  (*!
+   * lunr.Builder
+   * Copyright (C) 2020 Oliver Nightingale
+   *)
+*/

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