diff-grok 1.0.9 → 1.1.0

package/src/pipeline/pipeline.js

@@ -1,3 +1,4 @@
+/* eslint-disable max-len */
 import { solveIvp } from '../worker-tools';
 import { BasicModelPipelineCreator } from './basic-pipeline-creator';
 import { UpdatesModelPipelineCreator } from './updates-pipeline-creator';
@@ -9,7 +10,103 @@ function concat(arr1, arr2) {
     result.set(arr2, arr1.length);
     return result;
 }
-/** Apply pipeline to initial value problem with the source inputs, and return a solution */
+/** Apply pipeline to initial value problem with the source inputs, and return a solution
+ * @param pipeline - computational pipeleine
+ * @param ivp - initial value problem
+ * @param sourceInputs - source inputs of the model
+ * @returns the solution of the initial value problem
+ * @example
+ *  // Here, we consider modeling queues: https://en.wikipedia.org/wiki/M/M/c_queue
+ * import * as DGL from 'diff-grok';
+ *
+ * // 1. Model specification: the M|M|2|2 model
+ * const model = `#name: M|M|2|2
+ * #description: Modelling the system with two servers & two waiting places (EXPLAINED)
+ *
+ * #equations:
+ *   dp0/dt = -la * p0 + mu * p1
+ *   dp1/dt = la * p0 - (la + mu) * p1 + 2 * mu * p2
+ *   dp2/dt = la * p1 - (la + 2 * mu) * p2 + 2 * mu * p3
+ *   dp3/dt = la * p2 - (la + 2 * mu) * p3 + 2 * mu * p4
+ *
+ * #expressions:
+ *   la = 1 / arrival
+ *   mu = 1 / service
+ *   p4 = 1 - p0 - p1 - p2 - p3
+ *   busy = 1 - p0 - p1
+ *   queue = p3 + 2 * p4
+ *
+ * #argument: t
+ *   _t0 = 0     {min: 0;      max: 10;   caption: start;   category: Time; units: min}  [Initial time of simulation]
+ *   _t1 = 60    {min: 20;     max: 100;  caption: finish;  category: Time; units: min}  [Final time of simulation]
+ *   _h  = 1     {min: 0.01;   max: 0.1;  caption: step;    category: Time; units: min}  [Time step of simulation]
+ *
+ * #inits:
+ *   p0 = 1   {min: 0; max: 1; category: Initial state; caption: empty}   [Probability that initially there are NO customers]
+ *   p1 = 0   {min: 0; max: 1; category: Initial state; caption: single}  [Probability that initially there is ONE customer]
+ *   p2 = 0   {min: 0; max: 1; category: Initial state; caption: two}     [Probability that initially there are TWO customers]
+ *   p3 = 0   {min: 0; max: 1; category: Initial state; caption: three}   [Probability that initially there are THREE customers]
+ *
+ * #output:
+ *   t     {caption: Time, min}
+ *   p0    {caption: P(Empty)}
+ *   busy  {caption: P(Full load)}
+ *   queue {caption: E(Queue)}
+ *
+ * #parameters:
+ *   arrival = 10   {min: 1; max: 100; category: Means; caption: arrival;  units: min} [Mean arrival time]
+ *   service = 100  {min: 1; max: 100; category: Means; caption: service; units: min} [Mean service time]`;
+ *
+ * // 2. Generate IVP-objects: for the main thread & for computations in webworkers
+ * const ivp = DGL.getIVP(model);
+ * const ivpWW = DGL.getIvp2WebWorker(ivp);
+ *
+ *  // 3. Perform computations
+ * try {
+ *   // 3.1) Extract names of outputs
+ *   const outputNames = DGL.getOutputNames(ivp);
+ *   const outSize = outputNames.length;
+ *
+ *   // 3.2) Set model inputs
+ *   const inputs = {
+ *     _t0: 0, // Initial time of simulation
+ *     _t1: 60, // Final time of simulation
+ *     _h: 1, // Time step of simulation
+ *     p0: 1, // Probability that initially there are NO customers
+ *     p1: 0, // Probability that initially there is ONE customer
+ *     p2: 0, // Probability that initially there are TWO customers
+ *     p3: 0, // Probability that initially there are THREE customers
+ *     arrival: 10, // Mean arrival time
+ *     service: 100, // Mean service time
+ *   };
+ *   const inputVector = DGL.getInputVector(inputs, ivp);
+ *
+ *  // 3.3) Create a pipeline
+ *   const creator = DGL.getPipelineCreator(ivp);
+ *   const pipeline = creator.getPipeline(inputVector);
+ *
+ *   // 3.4) Apply pipeline to perform computations
+ *   const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
+ *   // 3.5) Print results
+ *
+ *   // 3.5.1) Table header
+ *   let line = '';
+ *   outputNames.forEach((name) => line += name + '      ');
+ *   console.log(line);
+ *
+ *   // 3.5.2) Table with solution
+ *   const length = solution[0].length;
+ *   for (let i = 0; i < length; ++i) {
+ *     line = '';
+ *
+ *     for (let j = 0; j < outSize; ++j)
+ *       line += solution[j][i].toFixed(8) + '     ';
+ *     console.log(line);
+ *   }
+ * } catch (err) {
+ *   console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
+ * }
+ */
 export function applyPipeline(pipeline, ivp, sourceInputs) {
     let solution = [];
     let currentSolution;
@@ -60,7 +157,101 @@ export function applyPipeline(pipeline, ivp, sourceInputs) {
     }
     return solution;
 } // performPipeline
-/** Return pipeline creator specified by the initial value problem */
+/** Return pipeline creator specified by the initial value problem
+ * @param ivp - initial value problem
+ * @returns a creator of computational pipeline corresponding to the given model
+ * @example
+ * // Here, we consider modeling queues: https://en.wikipedia.org/wiki/M/M/c_queue
+ * import * as DGL from 'diff-grok';
+ *
+ * // 1. Model specification: the M|M|2|2 model
+ * const model = `#name: M|M|2|2
+ * #description: Modelling the system with two servers & two waiting places (EXPLAINED)
+ *
+ * #equations:
+ *   dp0/dt = -la * p0 + mu * p1
+ *   dp1/dt = la * p0 - (la + mu) * p1 + 2 * mu * p2
+ *   dp2/dt = la * p1 - (la + 2 * mu) * p2 + 2 * mu * p3
+ *   dp3/dt = la * p2 - (la + 2 * mu) * p3 + 2 * mu * p4
+ *
+ * #expressions:
+ *   la = 1 / arrival
+ *   mu = 1 / service
+ *   p4 = 1 - p0 - p1 - p2 - p3
+ *   busy = 1 - p0 - p1
+ *   queue = p3 + 2 * p4
+ *
+ * #argument: t
+ *   _t0 = 0     {min: 0;      max: 10;   caption: start;   category: Time; units: min}  [Initial time of simulation]
+ *   _t1 = 60    {min: 20;     max: 100;  caption: finish;  category: Time; units: min}  [Final time of simulation]
+ *   _h  = 1     {min: 0.01;   max: 0.1;  caption: step;    category: Time; units: min}  [Time step of simulation]
+ *
+ * #inits:
+ *   p0 = 1   {min: 0; max: 1; category: Initial state; caption: empty}   [Probability that initially there are NO customers]
+ *   p1 = 0   {min: 0; max: 1; category: Initial state; caption: single}  [Probability that initially there is ONE customer]
+ *   p2 = 0   {min: 0; max: 1; category: Initial state; caption: two}     [Probability that initially there are TWO customers]
+ *   p3 = 0   {min: 0; max: 1; category: Initial state; caption: three}   [Probability that initially there are THREE customers]
+ *
+ * #output:
+ *   t     {caption: Time, min}
+ *   p0    {caption: P(Empty)}
+ *   busy  {caption: P(Full load)}
+ *   queue {caption: E(Queue)}
+ *
+ * #parameters:
+ *   arrival = 10   {min: 1; max: 100; category: Means; caption: arrival;  units: min} [Mean arrival time]
+ *   service = 100  {min: 1; max: 100; category: Means; caption: service; units: min} [Mean service time]`;
+ *
+ * // 2. Generate IVP-objects: for the main thread & for computations in webworkers
+ * const ivp = DGL.getIVP(model);
+ * const ivpWW = DGL.getIvp2WebWorker(ivp);
+ *
+ *  // 3. Perform computations
+ * try {
+ *   // 3.1) Extract names of outputs
+ *   const outputNames = DGL.getOutputNames(ivp);
+ *   const outSize = outputNames.length;
+ *
+ *   // 3.2) Set model inputs
+ *   const inputs = {
+ *     _t0: 0, // Initial time of simulation
+ *     _t1: 60, // Final time of simulation
+ *     _h: 1, // Time step of simulation
+ *     p0: 1, // Probability that initially there are NO customers
+ *     p1: 0, // Probability that initially there is ONE customer
+ *     p2: 0, // Probability that initially there are TWO customers
+ *     p3: 0, // Probability that initially there are THREE customers
+ *     arrival: 10, // Mean arrival time
+ *     service: 100, // Mean service time
+ *   };
+ *   const inputVector = DGL.getInputVector(inputs, ivp);
+ *
+ *  // 3.3) Create a pipeline
+ *   const creator = DGL.getPipelineCreator(ivp);
+ *   const pipeline = creator.getPipeline(inputVector);
+ *
+ *   // 3.4) Apply pipeline to perform computations
+ *   const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
+ *   // 3.5) Print results
+ *
+ *   // 3.5.1) Table header
+ *   let line = '';
+ *   outputNames.forEach((name) => line += name + '      ');
+ *   console.log(line);
+ *
+ *   // 3.5.2) Table with solution
+ *   const length = solution[0].length;
+ *   for (let i = 0; i < length; ++i) {
+ *     line = '';
+ *
+ *     for (let j = 0; j < outSize; ++j)
+ *       line += solution[j][i].toFixed(8) + '     ';
+ *     console.log(line);
+ *   }
+ * } catch (err) {
+ *   console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
+ * }
+ */
 export function getPipelineCreator(ivp) {
     if (ivp.updates !== null)
         return new UpdatesModelPipelineCreator(ivp);

package/src/pipeline/pipeline.js.map

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package/src/pipeline/pipeline.ts

@@ -1,3 +1,4 @@
+/* eslint-disable max-len */
 import {IVP2WebWorker, solveIvp} from '../worker-tools';
 import {PipelineCreator} from './pipeline-creator';
 import {BasicModelPipelineCreator} from './basic-pipeline-creator';
@@ -6,14 +7,25 @@ import {UpdatesModelPipelineCreator} from './updates-pipeline-creator';
 import {CyclicModelPipelineCreator} from './loops-pipeline-creator';
 
 
-/** Solution step wrapper */
+/**
+ * Represents a wrapper for a single modeling step in a multi-stage simulation.
+ *
+ * @property preproc - A preprocessing script for the step's inputs.
+ * @property postproc - A postprocessing script applied after the step is executed.
+ * @property out - A script that generates the output of the step.
+ */
 export type Wrapper = {
     preproc: string | null,
     out: string | null,
     postproc: string | null,
 };
 
-/** Solution pipeline */
+/**
+ * Represents a computational pipeline for multi-stage simulations.
+ *
+ * @property wrappers - An array of modeling steps (wrappers) that compose the pipeline.
+ * @property out - A script or specification that generates the final output of the pipeline.
+ */
 export type Pipeline = {
     wrappers: Wrapper[],
     out: string | null,
@@ -27,7 +39,103 @@ function concat(arr1: Float64Array, arr2: Float64Array): Float64Array {
   return result;
 }
 
-/** Apply pipeline to initial value problem with the source inputs, and return a solution */
+/** Apply pipeline to initial value problem with the source inputs, and return a solution
+ * @param pipeline - computational pipeleine
+ * @param ivp - initial value problem
+ * @param sourceInputs - source inputs of the model
+ * @returns the solution of the initial value problem
+ * @example
+ *  // Here, we consider modeling queues: https://en.wikipedia.org/wiki/M/M/c_queue
+ * import * as DGL from 'diff-grok';
+ *
+ * // 1. Model specification: the M|M|2|2 model
+ * const model = `#name: M|M|2|2
+ * #description: Modelling the system with two servers & two waiting places (EXPLAINED)
+ *
+ * #equations:
+ *   dp0/dt = -la * p0 + mu * p1
+ *   dp1/dt = la * p0 - (la + mu) * p1 + 2 * mu * p2
+ *   dp2/dt = la * p1 - (la + 2 * mu) * p2 + 2 * mu * p3
+ *   dp3/dt = la * p2 - (la + 2 * mu) * p3 + 2 * mu * p4
+ *
+ * #expressions:
+ *   la = 1 / arrival
+ *   mu = 1 / service
+ *   p4 = 1 - p0 - p1 - p2 - p3
+ *   busy = 1 - p0 - p1
+ *   queue = p3 + 2 * p4
+ *
+ * #argument: t
+ *   _t0 = 0     {min: 0;      max: 10;   caption: start;   category: Time; units: min}  [Initial time of simulation]
+ *   _t1 = 60    {min: 20;     max: 100;  caption: finish;  category: Time; units: min}  [Final time of simulation]
+ *   _h  = 1     {min: 0.01;   max: 0.1;  caption: step;    category: Time; units: min}  [Time step of simulation]
+ *
+ * #inits:
+ *   p0 = 1   {min: 0; max: 1; category: Initial state; caption: empty}   [Probability that initially there are NO customers]
+ *   p1 = 0   {min: 0; max: 1; category: Initial state; caption: single}  [Probability that initially there is ONE customer]
+ *   p2 = 0   {min: 0; max: 1; category: Initial state; caption: two}     [Probability that initially there are TWO customers]
+ *   p3 = 0   {min: 0; max: 1; category: Initial state; caption: three}   [Probability that initially there are THREE customers]
+ *
+ * #output:
+ *   t     {caption: Time, min}
+ *   p0    {caption: P(Empty)}
+ *   busy  {caption: P(Full load)}
+ *   queue {caption: E(Queue)}
+ *
+ * #parameters:
+ *   arrival = 10   {min: 1; max: 100; category: Means; caption: arrival;  units: min} [Mean arrival time]
+ *   service = 100  {min: 1; max: 100; category: Means; caption: service; units: min} [Mean service time]`;
+ *
+ * // 2. Generate IVP-objects: for the main thread & for computations in webworkers
+ * const ivp = DGL.getIVP(model);
+ * const ivpWW = DGL.getIvp2WebWorker(ivp);
+ *
+ *  // 3. Perform computations
+ * try {
+ *   // 3.1) Extract names of outputs
+ *   const outputNames = DGL.getOutputNames(ivp);
+ *   const outSize = outputNames.length;
+ *
+ *   // 3.2) Set model inputs
+ *   const inputs = {
+ *     _t0: 0, // Initial time of simulation
+ *     _t1: 60, // Final time of simulation
+ *     _h: 1, // Time step of simulation
+ *     p0: 1, // Probability that initially there are NO customers
+ *     p1: 0, // Probability that initially there is ONE customer
+ *     p2: 0, // Probability that initially there are TWO customers
+ *     p3: 0, // Probability that initially there are THREE customers
+ *     arrival: 10, // Mean arrival time
+ *     service: 100, // Mean service time
+ *   };
+ *   const inputVector = DGL.getInputVector(inputs, ivp);
+ *
+ *  // 3.3) Create a pipeline
+ *   const creator = DGL.getPipelineCreator(ivp);
+ *   const pipeline = creator.getPipeline(inputVector);
+ *
+ *   // 3.4) Apply pipeline to perform computations
+ *   const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
+ *   // 3.5) Print results
+ *
+ *   // 3.5.1) Table header
+ *   let line = '';
+ *   outputNames.forEach((name) => line += name + '      ');
+ *   console.log(line);
+ *
+ *   // 3.5.2) Table with solution
+ *   const length = solution[0].length;
+ *   for (let i = 0; i < length; ++i) {
+ *     line = '';
+ *
+ *     for (let j = 0; j < outSize; ++j)
+ *       line += solution[j][i].toFixed(8) + '     ';
+ *     console.log(line);
+ *   }
+ * } catch (err) {
+ *   console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
+ * }
+ */
 export function applyPipeline(pipeline: Pipeline, ivp: IVP2WebWorker, sourceInputs: Float64Array): Float64Array[] {
   let solution: Float64Array[] = [];
   let currentSolution: Float64Array[];
@@ -92,7 +200,101 @@ export function applyPipeline(pipeline: Pipeline, ivp: IVP2WebWorker, sourceInpu
   return solution;
 } // performPipeline
 
-/** Return pipeline creator specified by the initial value problem */
+/** Return pipeline creator specified by the initial value problem
+ * @param ivp - initial value problem
+ * @returns a creator of computational pipeline corresponding to the given model
+ * @example
+ * // Here, we consider modeling queues: https://en.wikipedia.org/wiki/M/M/c_queue
+ * import * as DGL from 'diff-grok';
+ *
+ * // 1. Model specification: the M|M|2|2 model
+ * const model = `#name: M|M|2|2
+ * #description: Modelling the system with two servers & two waiting places (EXPLAINED)
+ *
+ * #equations:
+ *   dp0/dt = -la * p0 + mu * p1
+ *   dp1/dt = la * p0 - (la + mu) * p1 + 2 * mu * p2
+ *   dp2/dt = la * p1 - (la + 2 * mu) * p2 + 2 * mu * p3
+ *   dp3/dt = la * p2 - (la + 2 * mu) * p3 + 2 * mu * p4
+ *
+ * #expressions:
+ *   la = 1 / arrival
+ *   mu = 1 / service
+ *   p4 = 1 - p0 - p1 - p2 - p3
+ *   busy = 1 - p0 - p1
+ *   queue = p3 + 2 * p4
+ *
+ * #argument: t
+ *   _t0 = 0     {min: 0;      max: 10;   caption: start;   category: Time; units: min}  [Initial time of simulation]
+ *   _t1 = 60    {min: 20;     max: 100;  caption: finish;  category: Time; units: min}  [Final time of simulation]
+ *   _h  = 1     {min: 0.01;   max: 0.1;  caption: step;    category: Time; units: min}  [Time step of simulation]
+ *
+ * #inits:
+ *   p0 = 1   {min: 0; max: 1; category: Initial state; caption: empty}   [Probability that initially there are NO customers]
+ *   p1 = 0   {min: 0; max: 1; category: Initial state; caption: single}  [Probability that initially there is ONE customer]
+ *   p2 = 0   {min: 0; max: 1; category: Initial state; caption: two}     [Probability that initially there are TWO customers]
+ *   p3 = 0   {min: 0; max: 1; category: Initial state; caption: three}   [Probability that initially there are THREE customers]
+ *
+ * #output:
+ *   t     {caption: Time, min}
+ *   p0    {caption: P(Empty)}
+ *   busy  {caption: P(Full load)}
+ *   queue {caption: E(Queue)}
+ *
+ * #parameters:
+ *   arrival = 10   {min: 1; max: 100; category: Means; caption: arrival;  units: min} [Mean arrival time]
+ *   service = 100  {min: 1; max: 100; category: Means; caption: service; units: min} [Mean service time]`;
+ *
+ * // 2. Generate IVP-objects: for the main thread & for computations in webworkers
+ * const ivp = DGL.getIVP(model);
+ * const ivpWW = DGL.getIvp2WebWorker(ivp);
+ *
+ *  // 3. Perform computations
+ * try {
+ *   // 3.1) Extract names of outputs
+ *   const outputNames = DGL.getOutputNames(ivp);
+ *   const outSize = outputNames.length;
+ *
+ *   // 3.2) Set model inputs
+ *   const inputs = {
+ *     _t0: 0, // Initial time of simulation
+ *     _t1: 60, // Final time of simulation
+ *     _h: 1, // Time step of simulation
+ *     p0: 1, // Probability that initially there are NO customers
+ *     p1: 0, // Probability that initially there is ONE customer
+ *     p2: 0, // Probability that initially there are TWO customers
+ *     p3: 0, // Probability that initially there are THREE customers
+ *     arrival: 10, // Mean arrival time
+ *     service: 100, // Mean service time
+ *   };
+ *   const inputVector = DGL.getInputVector(inputs, ivp);
+ *
+ *  // 3.3) Create a pipeline
+ *   const creator = DGL.getPipelineCreator(ivp);
+ *   const pipeline = creator.getPipeline(inputVector);
+ *
+ *   // 3.4) Apply pipeline to perform computations
+ *   const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
+ *   // 3.5) Print results
+ *
+ *   // 3.5.1) Table header
+ *   let line = '';
+ *   outputNames.forEach((name) => line += name + '      ');
+ *   console.log(line);
+ *
+ *   // 3.5.2) Table with solution
+ *   const length = solution[0].length;
+ *   for (let i = 0; i < length; ++i) {
+ *     line = '';
+ *
+ *     for (let j = 0; j < outSize; ++j)
+ *       line += solution[j][i].toFixed(8) + '     ';
+ *     console.log(line);
+ *   }
+ * } catch (err) {
+ *   console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
+ * }
+ */
 export function getPipelineCreator(ivp: IVP): PipelineCreator {
   if (ivp.updates !== null)
     return new UpdatesModelPipelineCreator(ivp);

package/src/pipeline/updates-pipeline-creator.js

@@ -1,15 +1,143 @@
+/* eslint-disable max-len */
 import { MATH_CONSTS, MATH_FUNCS, POW_IDX } from '../scripting-tools/scripting-tools';
 import { getOutputCode } from './output';
 import { PipelineCreator } from './pipeline-creator';
 import { argName2IdxMap, ARG, ARG_COL_IDX, CORRECTION_FACTOR, DEFAULT_CORRECTION } from './constants';
-/** Pipeline creator for model with updates */
+/** Pipeline creator for model with updates
+ * @example
+ * // This example shows how to apply pipelines and models with updates.
+ * // This approach can be used for in-webworkers analysis of models.
+ * // Here, we consider gluconic acid (GA) production by Aspergillus niger modeling.
+ *
+ * import * as DGL from 'diff-grok';
+ *
+ * // 1. Model specification
+ * const model = `#name: GA-production
+ * #tags: model
+ * #description: Gluconic acid (GA) production by Aspergillus niger modeling
+ *
+ * #equations:
+ *    dX/dt = rX
+ *    dS/dt = -gamma * rX - lambda * X
+ *    dO/dt = Kla * (Cod - O) - delta * rX - phi * X
+ *    dP/dt = alpha * rX + beta * X
+ *
+ * #expressions:
+ *    mu = muM * S / (Ks + S) * O / (Ko + O)
+ *    rX = mu * X
+ *
+ * #argument: t, 1-st stage
+ *    _t0 = 0 {units: h; caption: initial; category: Misc} [Start of the process]
+ *    _t1 = 60 {units: h; caption: 1-st stage; category: Durations; min: 20; max: 80} [Duration of the 1-st stage]
+ *    step = 0.1 {units: h; caption: step; category: Misc; min: 0.01; max: 1} [Time step of simulation]
+ *
+ * #update: 2-nd stage
+ *    duration = overall - _t1
+ *    S += 70
+ *
+ * #inits:
+ *    X = 5 {units: kg/m³; caption: biomass; category: Initial concentrations; min: 1; max: 10} [Aspergillus niger biomass]
+ *    S = 150 {units: kg/m³; caption: glucose; category: Initial concentrations; min: 50; max: 200} [Glucose]
+ *    O = 7 {units: kg/m³; caption: oxygen; category: Initial concentrations; min: 1; max: 10} [Dissolved oxygen]
+ *    P = 0 {units: kg/m³; caption: acid; category: Initial concentrations; min: 0; max: 0.1} [Gluconic acid]
+ *
+ * #output:
+ *    t {caption: time}
+ *    X {caption: biomass}
+ *    S {caption: glucose}
+ *    O {caption: oxygen}
+ *    P {caption: acid}
+ *
+ * #parameters:
+ *    overall = 100 {units: h; category: Durations; min: 100; max: 140} [Overall duration]
+ *    muM = 0.668 {units: 1/h; category: Parameters} [Monod type model parameter]
+ *    alpha = 2.92 {category: Parameters} [Monod type model parameter]
+ *    beta = 0.131 {units: 1/h; category: Parameters} [Monod type model parameter]
+ *    gamma = 2.12 {category: Parameters} [Monod type model parameter]
+ *    lambda = 0.232 {units: 1/h; category: Parameters} [Monod type model parameter]
+ *    delta = 0.278 {category: Parameters} [Monod type model parameter]
+ *    phi = 4.87e-3 {units: 1/h; category: Parameters} [Monod type model parameter]
+ *    Ks = 1.309e2 {units: g/L; category: Parameters} [Monod type model parameter]
+ *    Ko = 3.63e-4 {units: g/L; category: Parameters} [Monod type model parameter]
+ *    Kla = 1.7e-2 {units: 1/s; category: Parameters} [Volumetric mass transfer coefficient]
+ *    Cod = 15 {units: kg/m³; category: Parameters} [Liquid phase dissolved oxygen saturation concentration]
+ *
+ *  #tolerance: 1e-9`;
+ *
+ * // 2. Generate IVP-objects: for the main thread & for computations in webworkers
+ * const ivp = DGL.getIVP(model);
+ * const ivpWW = DGL.getIvp2WebWorker(ivp);
+ *
+ * // 3. Perform computations
+ * try {
+ *   // 3.1) Extract names of outputs
+ *   const outputNames = DGL.getOutputNames(ivp);
+ *   const outSize = outputNames.length;
+ *
+ *   // 3.2) Set model inputs
+ *   const inputs = {
+ *     _t0: 0,
+ *     _t1: 60,
+ *     _h: 1,
+ *     X: 5,
+ *     S: 150,
+ *     O: 7,
+ *     P: 0,
+ *     overall: 100,
+ *     muM: 0.668,
+ *     alpha: 2.92,
+ *     beta: 0.131,
+ *     gamma: 2.12,
+ *     lambda: 0.232,
+ *     delta: 0.278,
+ *     phi: 4.87e-3,
+ *     Ks: 1.309e2,
+ *     Ko: 3.63e-4,
+ *     Kla: 1.7e-2,
+ *     Cod: 15,
+ *   };
+ *
+ *   const inputVector = DGL.getInputVector(inputs, ivp);
+ *
+ *   // 3.3) Create a pipeline
+ *   const creator = DGL.getPipelineCreator(ivp);
+ *   const pipeline = creator.getPipeline(inputVector);
+ *
+ *   // 3.4) Apply pipeline to perform computations
+ *   const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
+ *
+ *   // 3.5) Print results
+ *
+ *   // 3.5.1) Table header
+ *   let line = '     ';
+ *   outputNames.forEach((name) => line += name + '         ');
+ *   console.log(line);
+ *
+ *   // 3.5.2) Table with solution  const length = solution[0].length;
+ *   for (let i = 0; i < length; ++i) {
+ *       line = '';
+ *
+ *       for (let j = 0; j < outSize; ++j)
+ *         line += solution[j][i].toFixed(8) + '     ';
+ *
+ *     console.log(line);
+ *   }
+ * } catch (err) {
+ *   console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
+ * }
+ */
 export class UpdatesModelPipelineCreator extends PipelineCreator {
+    /**
+     * @param ivp - initial value problem to be solved
+     */
     constructor(ivp) {
         super(ivp);
         if (ivp.updates === null)
             throw new Error('Incorrect use of UpdatesModelPipelineCreator: model has no updates');
     }
-    /** Return computations pipeline */
+    /** Return computations pipeline corresponding to the given input vector
+     * @param inputs - input vector of the model
+    */
     getPipeline(inputs) {
         if (this.ivp.updates === null)
             throw new Error('Incorrect use of UpdatesModelPipelineCreator: model has no updates');

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