daftari 1.30.0 → 1.31.0

package/dist/storage/index-db.js

@@ -44,7 +44,13 @@ import { normalizeIsoDate } from "../utils/dates.js";
 // Bumped 4 → 5 to add FTS5 (`documents_fts`) and sqlite-vec (`embeddings_vec`)
 // virtual tables for SQL-native search. The index is a derived cache so the
 // bump triggers a clean rebuild (see openIndexDb); no in-place migration.
-const SCHEMA_VERSION = "7";
+// Bumped 7 → 8 to add the trail-extra columns (observations, contested_at,
+// contest_reason) to derives_from_edges, which became the authoritative edge
+// READ path (#236) and so must carry the full public edge shape.
+// Bumped 8 → 9 to add doc_links, the materialized inbound-link graph that
+// backs inline structural decay (#8) — orphan and deprecated-still-linked
+// answered with one indexed query at read/search time.
+const SCHEMA_VERSION = "9";
 // Meta key that records the dim at which `embeddings_vec` was created. Used
 // on every open to decide whether to rebuild the virtual table (provider
 // switch). The durable `embeddings` cache is per-(model, dim) so it survives
@@ -96,6 +102,12 @@ CREATE TABLE IF NOT EXISTS meta (
   key   TEXT PRIMARY KEY,
   value TEXT NOT NULL
 );
+CREATE TABLE IF NOT EXISTS doc_links (
+  source_path TEXT NOT NULL,
+  target_path TEXT NOT NULL,
+  PRIMARY KEY (source_path, target_path)
+);
+CREATE INDEX IF NOT EXISTS idx_doc_links_target ON doc_links(target_path);
 CREATE TABLE IF NOT EXISTS staged_actions (
   id                  TEXT PRIMARY KEY,
   action_type         TEXT NOT NULL,
@@ -123,6 +135,9 @@ CREATE TABLE IF NOT EXISTS derives_from_edges (
   last_age_decay TEXT NOT NULL,
   status         TEXT NOT NULL,
   direction_verdict TEXT NOT NULL DEFAULT 'directed',
+  observations   INTEGER NOT NULL DEFAULT 0,
+  contested_at   TEXT,
+  contest_reason TEXT,
   PRIMARY KEY (from_path, to_path)
 );
 CREATE INDEX IF NOT EXISTS idx_edges_from ON derives_from_edges(from_path);
@@ -371,7 +386,7 @@ export function openIndexDb(vaultRoot, expectedVecDim) {
 // cleared here — they are content-addressed and a subsequent gc pass deletes
 // only the orphaned ones, preserving the cache across reindexes.
 export function clearIndex(db) {
-    db.exec("DELETE FROM documents; DELETE FROM chunks;");
+    db.exec("DELETE FROM documents; DELETE FROM chunks; DELETE FROM doc_links;");
 }
 // Drops one document and all its chunks. Used by the write path to evict a
 // document's stale rows before re-inserting it: a plain INSERT OR REPLACE on
@@ -379,6 +394,45 @@ export function clearIndex(db) {
 export function deleteDocument(db, path) {
     db.prepare("DELETE FROM documents WHERE path = ?").run(path);
     db.prepare("DELETE FROM chunks WHERE path = ?").run(path);
+    // Outgoing links die with the doc. Inbound rows pointing AT it may remain
+    // (their sources still link here on disk); inboundLinkers joins documents
+    // on source_path, so a deleted source can never surface as a linker.
+    db.prepare("DELETE FROM doc_links WHERE source_path = ?").run(path);
+}
+// --- inbound-link graph (#8) ------------------------------------------------
+//
+// doc_links materializes the body-link graph at (re)index time so the read
+// and search paths can answer "who links here?" with one indexed query
+// instead of loading the whole vault (the exact cost #8 designs out). Rows
+// are derived and rebuildable — same ephemerality contract as everything
+// else in this file.
+// Replaces the outgoing link rows for one source document.
+export function replaceDocLinks(db, sourcePath, targets) {
+    db.prepare("DELETE FROM doc_links WHERE source_path = ?").run(sourcePath);
+    const insert = db.prepare("INSERT OR IGNORE INTO doc_links (source_path, target_path) VALUES (?, ?)");
+    for (const t of targets) {
+        if (t === sourcePath)
+            continue; // a self-link is not an inbound edge
+        insert.run(sourcePath, t);
+    }
+}
+// The documents whose bodies link to `targetPath`, with each linker's
+// lifecycle status (the deprecated-still-linked check needs it). Joined to
+// `documents` so a source deleted after its links were written can never
+// surface as a phantom linker.
+export function inboundLinkers(db, targetPath) {
+    return db
+        .prepare(`SELECT d.path AS path, d.status AS status
+         FROM doc_links AS l
+         JOIN documents AS d ON d.path = l.source_path
+        WHERE l.target_path = ?
+        ORDER BY d.path`)
+        .all(targetPath);
+}
+// Every indexed document path — the known-path universe outgoing-link
+// resolution runs against for a single-document incremental index.
+export function allDocumentPaths(db) {
+    return db.prepare("SELECT path FROM documents ORDER BY path").all().map((r) => r.path);
 }
 // --- Float32 <-> BLOB ------------------------------------------------------
 export function embeddingToBlob(vec) {
@@ -712,8 +766,9 @@ export function getStagedActionsByStatus(db, status) {
 export function upsertDerivesFromEdge(db, row) {
     db.prepare(`INSERT INTO derives_from_edges
        (from_path, to_path, strength, k_survived, first_observed, last_rederived,
-        last_age_decay, status, direction_verdict)
-     VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)
+        last_age_decay, status, direction_verdict, observations, contested_at,
+        contest_reason)
+     VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
      ON CONFLICT(from_path, to_path) DO UPDATE SET
        strength       = excluded.strength,
        k_survived     = excluded.k_survived,
@@ -721,7 +776,41 @@ export function upsertDerivesFromEdge(db, row) {
        last_rederived = excluded.last_rederived,
        last_age_decay = excluded.last_age_decay,
        status         = excluded.status,
-       direction_verdict = excluded.direction_verdict`).run(row.from_path, row.to_path, row.strength, row.k_survived, row.first_observed, row.last_rederived, row.last_age_decay, row.status, row.direction_verdict);
+       direction_verdict = excluded.direction_verdict,
+       observations   = excluded.observations,
+       contested_at   = excluded.contested_at,
+       contest_reason = excluded.contest_reason`).run(row.from_path, row.to_path, row.strength, row.k_survived, row.first_observed, row.last_rederived, row.last_age_decay, row.status, row.direction_verdict, row.observations, row.contested_at, row.contest_reason);
+}
+// One edge row matched in EITHER orientation: the stored (from_path, to_path)
+// is the derived OUTPUT orientation, which premise votes can flip, so a lookup
+// by pair must not assume the caller's order matches the stored order.
+export function getDerivesFromEdgePair(db, a, b) {
+    const row = db
+        .prepare(`SELECT * FROM derives_from_edges
+       WHERE (from_path = ? AND to_path = ?) OR (from_path = ? AND to_path = ?)`)
+        .get(a, b, b, a);
+    return row ?? null;
+}
+// Edge rows matching the given endpoint / status prefilters. `statusIn` is a
+// PREFILTER on the materialized status — the caller must recompute the live
+// aged status and re-filter; passing a conservative superset here is its job.
+export function listDerivesFromEdgeRows(db, filter = {}) {
+    const where = [];
+    const params = [];
+    if (filter.fromPath) {
+        where.push("from_path = ?");
+        params.push(filter.fromPath);
+    }
+    if (filter.toPath) {
+        where.push("to_path = ?");
+        params.push(filter.toPath);
+    }
+    if (filter.statusIn && filter.statusIn.length > 0) {
+        where.push(`status IN (${filter.statusIn.map(() => "?").join(", ")})`);
+        params.push(...filter.statusIn);
+    }
+    const sql = `SELECT * FROM derives_from_edges${where.length ? ` WHERE ${where.join(" AND ")}` : ""}`;
+    return db.prepare(sql).all(...params);
 }
 // Drops every edge row. Called at the start of a rebuild so a reindex never
 // leaves rows for edges the jsonl no longer reflects.

package/dist/storage/index-db.js.map

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package/dist/storage/local.d.ts

@@ -5,6 +5,7 @@ export interface ResolvedVaultPath {
     relPath: string;
 }
 export declare function resolveVaultPath(vaultRoot: string, relativePath: string): Result<ResolvedVaultPath, Error>;
+export declare function canonicalVaultRelPath(vaultRoot: string, relativePath: string): Result<string, Error>;
 export declare function directoryExists(path: string): Promise<boolean>;
 export declare function readFile(absolutePath: string): Promise<Result<string, Error>>;
 export declare function listFiles(vaultRoot: string, pattern?: string): Promise<Result<string[], Error>>;

package/dist/storage/local.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"local.d.ts","sourceRoot":"","sources":["../../src/storage/local.ts"],"names":[],"mappings":"AAUA,OAAO,EAAW,KAAK,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAmD/D,wBAAgB,oBAAoB,IAAI,IAAI,CAE3C;AAaD,MAAM,WAAW,iBAAiB;IAChC,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;CACjB;AAKD,wBAAgB,gBAAgB,CAC9B,SAAS,EAAE,MAAM,EACjB,YAAY,EAAE,MAAM,GACnB,MAAM,CAAC,iBAAiB,EAAE,KAAK,CAAC,CAsBlC;AAED,wBAAsB,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAOpE;AAED,wBAAsB,QAAQ,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC,CAQnF;AAID,wBAAsB,SAAS,CAC7B,SAAS,EAAE,MAAM,EACjB,OAAO,SAAY,GAClB,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,EAAE,KAAK,CAAC,CAAC,CAkBlC"}
+{"version":3,"file":"local.d.ts","sourceRoot":"","sources":["../../src/storage/local.ts"],"names":[],"mappings":"AAUA,OAAO,EAAW,KAAK,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAmD/D,wBAAgB,oBAAoB,IAAI,IAAI,CAE3C;AAaD,MAAM,WAAW,iBAAiB;IAChC,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;CACjB;AAKD,wBAAgB,gBAAgB,CAC9B,SAAS,EAAE,MAAM,EACjB,YAAY,EAAE,MAAM,GACnB,MAAM,CAAC,iBAAiB,EAAE,KAAK,CAAC,CAsBlC;AAQD,wBAAgB,qBAAqB,CACnC,SAAS,EAAE,MAAM,EACjB,YAAY,EAAE,MAAM,GACnB,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC,CAIvB;AAED,wBAAsB,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAOpE;AAED,wBAAsB,QAAQ,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC,CAQnF;AAID,wBAAsB,SAAS,CAC7B,SAAS,EAAE,MAAM,EACjB,OAAO,SAAY,GAClB,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,EAAE,KAAK,CAAC,CAAC,CAkBlC"}

package/dist/storage/local.js

@@ -88,6 +88,18 @@ export function resolveVaultPath(vaultRoot, relativePath) {
     }
     return ok({ absPath: target, relPath: realRel });
 }
+// The realpath-canonical vault-relative form of a caller-supplied path
+// (trimmed), i.e. resolveVaultPath's relPath — the ONLY safe key for
+// looking up provenance, consumes, and read-log entries. Tools that anchor
+// a query on a caller string use this one helper; recomputing the relative
+// lexically diverges from the stored keys under a symlinked vault root
+// (#127/#128).
+export function canonicalVaultRelPath(vaultRoot, relativePath) {
+    const resolved = resolveVaultPath(vaultRoot, relativePath.trim());
+    if (!resolved.ok)
+        return resolved;
+    return ok(resolved.value.relPath);
+}
 export async function directoryExists(path) {
     try {
         const s = await stat(path);

package/dist/storage/local.js.map

@@ -1 +1 @@
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package/dist/storage/sync.d.ts

@@ -0,0 +1,25 @@
+import { type Result } from "../frontmatter/types.js";
+import type { StorageBackend } from "./backend.js";
+export declare const MANIFEST_KEY = "meta/manifest.json";
+export interface SyncManifest {
+    version: 1;
+    files: Record<string, string>;
+}
+export interface SyncSummary {
+    uploaded: number;
+    deleted: number;
+    unchanged: number;
+    skippedSymlinks: number;
+    bytesUploaded: number;
+}
+export interface SyncOptions {
+    dryRun?: boolean;
+}
+export declare function syncVault(vaultRoot: string, backend: StorageBackend, options?: SyncOptions): Promise<Result<SyncSummary, Error>>;
+export interface RestoreSummary {
+    restored: number;
+    bytes: number;
+    skippedExcluded: number;
+}
+export declare function restoreVault(vaultRoot: string, backend: StorageBackend): Promise<Result<RestoreSummary, Error>>;
+//# sourceMappingURL=sync.d.ts.map

package/dist/storage/sync.d.ts.map

@@ -0,0 +1 @@
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package/dist/storage/sync.js

@@ -0,0 +1,308 @@
+// The sync engine (#6, spec Decision 3): pushes the canonical local working
+// copy — markdown tree, .git directory, and durable .daftari state — to a
+// storage backend, and can restore a vault from that backing into an empty
+// directory.
+//
+// Key namespace on the backend:
+//   tree/<vault-relative-path>   file bytes
+//   meta/manifest.json           what the backing currently holds
+//
+// The manifest (key → sha256) is the remote source of truth for diffing, so
+// sync is stateless locally and incremental: only changed/new keys upload,
+// removed keys delete. The manifest is written LAST — a crashed sync leaves
+// it understating what was pushed, so the next run re-uploads at worst, never
+// skips.
+//
+// What never syncs: the rebuildable SQLite databases (index.db, locks.db and
+// their journals), the process lock, and transient per-cycle staging files.
+// Durable-but-gitignored audit state (read-log, edges, provenance journals)
+// DOES sync — unlike the index it cannot be rebuilt from the markdown.
+//
+// Concurrency note: sync reads the live tree without taking the process
+// lock, so a write racing the walk can capture a torn snapshot (a ref
+// updated mid-copy). That snapshot is repaired by the next run — acceptable
+// for a backup channel, and the price of syncing while the server serves.
+import { createHash } from "node:crypto";
+import { createReadStream } from "node:fs";
+import { mkdir, readdir, readFile, stat, writeFile } from "node:fs/promises";
+import { dirname, isAbsolute, relative, resolve, sep } from "node:path";
+import { err, ok } from "../frontmatter/types.js";
+import { walkFiles } from "./fs-walk.js";
+export const MANIFEST_KEY = "meta/manifest.json";
+const TREE_PREFIX = "tree/";
+const CONCURRENCY = 8;
+// Rebuildable or transient files that must never reach the backing. Everything
+// else under the vault root — including .git and the durable .daftari
+// journals — is part of the backup.
+const SYNC_EXCLUDED = new Set([
+    ".daftari/process.lock",
+    ".daftari/index.db",
+    ".daftari/index.db-journal",
+    ".daftari/index.db-wal",
+    ".daftari/index.db-shm",
+    ".daftari/locks.db",
+    ".daftari/locks.db-journal",
+    ".daftari/locks.db-wal",
+    ".daftari/locks.db-shm",
+    ".daftari/backfill-plan.jsonl",
+    ".daftari/wake-queue.jsonl",
+    // Its own header calls it "ephemeral cross-session memory … rebuildable:
+    // absent OR corrupt ⇒ the empty default" — same class as the wake queue.
+    ".daftari/consolidate-state.json",
+]);
+function isExcluded(relPath) {
+    if (SYNC_EXCLUDED.has(relPath))
+        return true;
+    // Git EXECUTES what these declare — filter/fsmonitor command lines in
+    // config, hook scripts in hooks/ — and a `git clone` deliberately never
+    // transmits them from a remote for exactly that reason. Carrying them
+    // through the backing would turn backend write access into code execution
+    // on the operator's next auto-commit, so they are excluded in BOTH
+    // directions; the restore side re-enforces this against a poisoned
+    // manifest. After a restore, remotes and local config are re-added by the
+    // operator.
+    if (relPath === ".git/config" || relPath.startsWith(".git/hooks/"))
+        return true;
+    // Defensive: a vault should never contain one, but never ship it if it does.
+    return relPath.split("/").includes("node_modules");
+}
+// Streaming hash so the walk phase never buffers a whole file — .git is in
+// scope now, and packfiles can dwarf the markdown they version.
+function streamHash(abs) {
+    return new Promise((resolveHash, rejectHash) => {
+        const digest = createHash("sha256");
+        let size = 0;
+        const stream = createReadStream(abs);
+        stream.on("data", (chunk) => {
+            digest.update(chunk);
+            size += chunk.length;
+        });
+        stream.on("error", rejectHash);
+        stream.on("end", () => resolveHash({ hash: digest.digest("hex"), size }));
+    });
+}
+// (size, mtime) → hash memo so a periodic sync (`daftari serve`, every N
+// minutes) re-hashes only what actually changed instead of streaming the
+// whole tree — with .git in scope, full-history rehash every tick scales
+// with repo size, not the delta. In-memory on purpose: it lives exactly as
+// long as the serving process, needs no invalidation story across
+// processes, and a one-shot CLI run simply pays the honest full cost.
+const hashMemo = new Map();
+async function hashFile(abs) {
+    const s = await stat(abs);
+    const memo = hashMemo.get(abs);
+    if (memo && memo.size === s.size && memo.mtimeMs === s.mtimeMs) {
+        return { hash: memo.hash, size: memo.size };
+    }
+    const hashed = await streamHash(abs);
+    hashMemo.set(abs, { size: hashed.size, mtimeMs: s.mtimeMs, hash: hashed.hash });
+    return hashed;
+}
+// Walks the vault tree (dotfiles included — .git is the point), hashing every
+// non-excluded regular file. Symlinks are skipped and counted: an object
+// store has no symlink notion, and following one could escape the vault.
+async function collectLocalState(vaultRoot) {
+    const root = resolve(vaultRoot);
+    try {
+        const walked = await walkFiles(root);
+        const candidates = walked.files
+            .map((abs) => ({ abs, rel: relative(root, abs).split(sep).join("/") }))
+            .filter((c) => !isExcluded(c.rel));
+        // Evict memo entries for files that no longer exist under THIS root —
+        // without it the memo grows with total churn (git gc repacks, deletes),
+        // not live tree size. Scoped to the root so one process syncing several
+        // vaults never evicts another vault's entries.
+        const live = new Set(candidates.map((c) => c.abs));
+        const rootPrefix = root + sep;
+        for (const key of hashMemo.keys()) {
+            if (key.startsWith(rootPrefix) && !live.has(key))
+                hashMemo.delete(key);
+        }
+        // Hash with the same bounded pool the upload phase uses — the walk now
+        // covers .git, and serializing on disk I/O for packfiles wastes time.
+        const files = new Array(candidates.length);
+        const hashed = await runPool(candidates.map((c, i) => async () => {
+            try {
+                const { hash, size } = await hashFile(c.abs);
+                files[i] = { relPath: c.rel, absPath: c.abs, hash, size };
+                return ok(undefined);
+            }
+            catch (e) {
+                return err(new Error(`cannot hash ${c.rel}: ${e instanceof Error ? e.message : String(e)}`));
+            }
+        }));
+        if (!hashed.ok)
+            return hashed;
+        return ok({ files, skippedSymlinks: walked.symlinks });
+    }
+    catch (e) {
+        return err(new Error(`cannot walk vault: ${e instanceof Error ? e.message : String(e)}`));
+    }
+}
+async function readManifest(backend) {
+    const raw = await backend.get(MANIFEST_KEY);
+    if (!raw.ok)
+        return raw;
+    if (raw.value === null)
+        return ok({ version: 1, files: {} });
+    try {
+        const parsed = JSON.parse(raw.value.toString("utf-8"));
+        if (parsed.version !== 1 || typeof parsed.files !== "object" || parsed.files === null) {
+            return err(new Error(`backing manifest at ${MANIFEST_KEY} has an unknown shape`));
+        }
+        // Null prototype so a file literally named __proto__ (possible in a git
+        // object dir? no — but in the tree, yes) round-trips as an own key.
+        const files = Object.create(null);
+        for (const [k, v] of Object.entries(parsed.files)) {
+            if (typeof v === "string")
+                files[k] = v;
+        }
+        return ok({ version: 1, files });
+    }
+    catch (e) {
+        return err(new Error(`backing manifest is not valid JSON: ${e instanceof Error ? e.message : String(e)}`));
+    }
+}
+// Runs `tasks` with a bounded worker pool, stopping at the first error.
+async function runPool(tasks) {
+    let index = 0;
+    let failure = null;
+    async function worker() {
+        while (failure === null) {
+            const i = index++;
+            const task = tasks[i];
+            if (!task)
+                return;
+            const res = await task();
+            if (!res.ok && failure === null)
+                failure = res.error;
+        }
+    }
+    await Promise.all(Array.from({ length: Math.min(CONCURRENCY, tasks.length) }, worker));
+    return failure ? err(failure) : ok(undefined);
+}
+// Push the working copy to the backend. Incremental against the remote
+// manifest; writes the updated manifest last.
+export async function syncVault(vaultRoot, backend, options = {}) {
+    const local = await collectLocalState(vaultRoot);
+    if (!local.ok)
+        return local;
+    const manifest = await readManifest(backend);
+    if (!manifest.ok)
+        return manifest;
+    const remote = manifest.value.files;
+    const localByPath = new Map(local.value.files.map((f) => [f.relPath, f]));
+    const toUpload = local.value.files.filter((f) => remote[f.relPath] !== f.hash);
+    const toDelete = Object.keys(remote).filter((relPath) => !localByPath.has(relPath));
+    const unchanged = local.value.files.length - toUpload.length;
+    const summary = {
+        uploaded: toUpload.length,
+        deleted: toDelete.length,
+        unchanged,
+        skippedSymlinks: local.value.skippedSymlinks,
+        bytesUploaded: toUpload.reduce((n, f) => n + f.size, 0),
+    };
+    if (options.dryRun)
+        return ok(summary);
+    const uploads = toUpload.map((f) => async () => {
+        // Re-read at upload time: the hash was computed during the walk and the
+        // manifest must describe the bytes actually pushed, so hash what we send.
+        let bytes;
+        try {
+            bytes = await readFile(f.absPath);
+        }
+        catch (e) {
+            return err(new Error(`cannot read ${f.relPath}: ${e instanceof Error ? e.message : String(e)}`));
+        }
+        f.hash = createHash("sha256").update(bytes).digest("hex");
+        f.size = bytes.byteLength;
+        return backend.put(TREE_PREFIX + f.relPath, bytes);
+    });
+    const uploaded = await runPool(uploads);
+    if (!uploaded.ok)
+        return uploaded;
+    const deletes = toDelete.map((relPath) => () => backend.delete(TREE_PREFIX + relPath));
+    const deleted = await runPool(deletes);
+    if (!deleted.ok)
+        return deleted;
+    const nextManifest = { version: 1, files: {} };
+    const nextFiles = Object.create(null);
+    for (const f of local.value.files)
+        nextFiles[f.relPath] = f.hash;
+    nextManifest.files = nextFiles;
+    const wrote = await backend.put(MANIFEST_KEY, Buffer.from(JSON.stringify(nextManifest, null, 2), "utf-8"));
+    if (!wrote.ok)
+        return wrote;
+    return ok(summary);
+}
+// Restore a vault from the backing into `vaultRoot`, which must be empty or
+// absent — restore never merges into or overwrites live state. After a
+// restore the caller reindexes (the index was deliberately never synced).
+export async function restoreVault(vaultRoot, backend) {
+    const root = resolve(vaultRoot);
+    try {
+        const existing = await readdir(root);
+        if (existing.length > 0) {
+            return err(new Error(`refusing to restore into non-empty directory: ${root}`));
+        }
+    }
+    catch (e) {
+        if (e.code !== "ENOENT") {
+            return err(new Error(`cannot inspect ${root}: ${e instanceof Error ? e.message : String(e)}`));
+        }
+    }
+    const manifest = await readManifest(backend);
+    if (!manifest.ok)
+        return manifest;
+    // The manifest is data from the backing, not trusted input: re-apply the
+    // exclusion rules here so a poisoned manifest cannot smuggle in what push
+    // would never have uploaded (git config/hooks — code execution on the
+    // next auto-commit).
+    const allPaths = Object.keys(manifest.value.files);
+    const paths = allPaths.filter((p) => !isExcluded(p));
+    const skippedExcluded = allPaths.length - paths.length;
+    if (allPaths.length === 0) {
+        return err(new Error(`backing at ${backend.id} holds no manifest — nothing to restore`));
+    }
+    let bytesTotal = 0;
+    const tasks = paths.map((relPath) => async () => {
+        // Confine each manifest path to the restore root — the manifest is data
+        // from the backing, not trusted input.
+        const target = resolve(root, relPath);
+        const rel = relative(root, target);
+        if (rel === "" || rel.startsWith("..") || isAbsolute(rel)) {
+            return err(new Error(`manifest path escapes restore root: ${relPath}`));
+        }
+        const got = await backend.get(TREE_PREFIX + relPath);
+        if (!got.ok)
+            return got;
+        if (got.value === null) {
+            return err(new Error(`backing is missing ${TREE_PREFIX}${relPath} listed in its manifest`));
+        }
+        // Verify the bytes against the manifest's hash — that is what the hash
+        // is FOR. This catches corruption, torn writes, and a push racing the
+        // restore; it is not a tamper defense (an attacker who can rewrite
+        // objects can rewrite the manifest too).
+        const gotHash = createHash("sha256").update(got.value).digest("hex");
+        const wantHash = manifest.value.files[relPath];
+        if (gotHash !== wantHash) {
+            return err(new Error(`backing object ${TREE_PREFIX}${relPath} does not match its manifest hash ` +
+                `(got ${gotHash.slice(0, 12)}…, manifest says ${wantHash?.slice(0, 12)}…) — ` +
+                "the backing is corrupt or a push is racing this restore"));
+        }
+        try {
+            await mkdir(dirname(target), { recursive: true });
+            await writeFile(target, got.value);
+        }
+        catch (e) {
+            return err(new Error(`cannot write ${relPath}: ${e instanceof Error ? e.message : String(e)}`));
+        }
+        bytesTotal += got.value.byteLength;
+        return ok(undefined);
+    });
+    const ran = await runPool(tasks);
+    if (!ran.ok)
+        return ran;
+    return ok({ restored: paths.length, bytes: bytesTotal, skippedExcluded });
+}
+//# sourceMappingURL=sync.js.map