daftari 1.19.0 → 1.21.0

package/dist/curation/shadow.js

@@ -0,0 +1,211 @@
+// Shadow-mode execution path (spec §11.5) — compute-but-don't-write.
+//
+// When a vault runs with `shadow_mode: true`, the doc-write tools compute
+// everything a live write would (validation, RBAC, the new frontmatter, the
+// diff, the commit message), then instead of touching disk they log the
+// would-be do() here and return a shadow-flagged result. This is the
+// calibration posture Decision 3 (§10.4) requires: the I-table and the trust
+// budget get real data from day one WITHOUT acting in production.
+//
+// Store: .daftari/shadow-actions.jsonl — append-only, one JSON record per
+// intercepted write, the same local-advisory posture as the staged-action and
+// edge logs (git-ignored; never vault content).
+//
+// The numbers (§10.4, ALL PROVISIONAL — they are the thing being calibrated):
+//
+//   impact  I  = min(i_base + K_BLAST · (blast − 1)^1.5, 1)
+//     - i_base per action type (table below) — the action's intrinsic weight
+//     - blast = 1 + downstream docs reachable from the target through the
+//       reverse link/source maps (the tension-blast engine). Convex (α = 1.5):
+//       linear scaling under-prices high-blast actions.
+//
+//   budget  B₀ = min(B0_BASE + B0_PER_PENDING · pendingStagedActions,
+//                    max(1, ln(docCount)))
+//     - a vault-state function, not a constant: proportional to ratification
+//       queue depth with a log(N) ceiling.
+//
+//   would_gate = spent_before + I > B₀
+//     - `spent` is the §3.7 monotonic per-session budget scalar, shadow-only:
+//       it accumulates per process per vault and records where exhaustion
+//       WOULD have checkpointed the pass. It keeps accumulating past the
+//       budget so the log shows everything after the would-be checkpoint as
+//       gated, which is exactly the calibration signal.
+import { appendFileSync, mkdirSync, readFileSync } from "node:fs";
+import { join, relative, resolve } from "node:path";
+import { err, ok } from "../frontmatter/types.js";
+import { listStagedActions } from "./staged-actions.js";
+import { buildReverseLinkMap, buildReverseSourceMap, computeBlast } from "./tension-blast.js";
+import { loadDocuments } from "./vault-docs.js";
+// --- calibration constants (provisional — §10.4; exported for the loop) -----
+// Intrinsic impact per write action. A starting table to calibrate against,
+// not a claim: shadow mode exists to find out where these are wrong.
+export const SHADOW_I_BASE = {
+    create: 0.1,
+    append: 0.15,
+    update: 0.2,
+    "confidence-set": 0.2,
+    promote: 0.3,
+    deprecate: 0.4,
+    supersede: 0.4,
+    merge: 0.6,
+};
+// Convex blast scaling: I grows with (blast − 1)^1.5.
+export const SHADOW_K_BLAST = 0.05;
+export const SHADOW_BLAST_ALPHA = 1.5;
+// Budget B₀ = min(base + per_pending · queueDepth, max(1, ln(N))).
+export const SHADOW_B0_BASE = 0.5;
+export const SHADOW_B0_PER_PENDING = 0.25;
+export function shadowActionsPath(vaultRoot) {
+    return join(vaultRoot, ".daftari", "shadow-actions.jsonl");
+}
+// --- impact / budget math ------------------------------------------------------
+export function shadowImpact(action, blast) {
+    const iBase = SHADOW_I_BASE[action] ?? 0.2;
+    const b = Math.max(1, blast);
+    return Math.min(iBase + SHADOW_K_BLAST * (b - 1) ** SHADOW_BLAST_ALPHA, 1);
+}
+export function shadowBudget(pendingStagedActions, docCount) {
+    const ceiling = Math.max(1, Math.log(Math.max(1, docCount)));
+    return Math.min(SHADOW_B0_BASE + SHADOW_B0_PER_PENDING * pendingStagedActions, ceiling);
+}
+// Canonical vault-relative form of a seed path. The reverse maps are keyed by
+// the relPaths loadDocuments walked, so an aliased caller path (`./pricing/a.md`)
+// would silently miss every key and under-count blast to 1 — the same aliasing
+// class the merge and edge tools canonicalize against.
+function canonicalSeed(vaultRoot, relPath) {
+    return relative(resolve(vaultRoot), resolve(vaultRoot, relPath.trim()));
+}
+// Downstream reach of the seed paths through reverse links + sources: how many
+// other docs a change here could invalidate. 1 (the doc itself) + unique
+// downstream entries (computeBlast never returns a seed as its own downstream).
+// One full-vault doc load per shadowed write — shadow mode is a calibration
+// posture, not a hot path.
+function shadowBlastFromDocs(vaultRoot, seeds, docs) {
+    const blast = computeBlast({
+        seeds: seeds.map((s) => canonicalSeed(vaultRoot, s)),
+        reverseSource: buildReverseSourceMap(docs),
+        reverseLink: buildReverseLinkMap(docs),
+    });
+    return 1 + blast.downstream.length;
+}
+// --- per-process session spend (§3.7, shadow-only) ---------------------------
+//
+// A "session" here is the process lifetime — a coarse stand-in for §3.7's
+// per-consolidation-session scalar until the loop exists to define real
+// session boundaries. Under a long-lived server the spend is monotone while
+// B₀ is ln(N)-capped, so the gated fraction saturates over a long calibration
+// window; every record stores `spent_before` and `budget`, so sessions can be
+// re-segmented offline when reading the calibration data. A session-boundary
+// mechanism (idle-gap reset / loop-session reset) lands with the loop.
+const spentByVault = new Map();
+export function shadowSpent(vaultRoot) {
+    return spentByVault.get(vaultRoot) ?? 0;
+}
+// Test hook: a "session" is the process lifetime; tests need fresh sessions.
+export function resetShadowSession(vaultRoot) {
+    spentByVault.delete(vaultRoot);
+}
+// Computes blast/impact/budget for a would-be write, appends the shadow
+// record, advances the session spend, and returns the record. This is the
+// single entry point the write tools call when shadow mode is on.
+export async function recordShadowAction(vaultRoot, input) {
+    const seeds = input.touchedPaths && input.touchedPaths.length > 0 ? input.touchedPaths : [input.targetPath];
+    const docs = await loadDocuments(vaultRoot);
+    if (!docs.ok)
+        return docs;
+    const blastValue = shadowBlastFromDocs(vaultRoot, seeds, docs.value);
+    // Queue depth counts only LIVE pending actions: the expiry sweep runs inside
+    // vault_lint, so between lints the raw pending list can carry TTL-dead
+    // entries that would inflate B₀.
+    const pending = await listStagedActions(vaultRoot, "pending");
+    if (!pending.ok)
+        return pending;
+    const nowMs = Date.now();
+    const livePending = pending.value.filter((a) => Date.parse(a.expiresAt) > nowMs).length;
+    const impact = shadowImpact(input.action, blastValue);
+    const budget = shadowBudget(livePending, docs.value.length);
+    const spentBefore = shadowSpent(vaultRoot);
+    const record = {
+        at: new Date().toISOString().replace(/\.\d{3}Z$/, "Z"),
+        tool: input.tool,
+        action: input.action,
+        target_path: input.targetPath,
+        ...(input.touchedPaths && input.touchedPaths.length > 0
+            ? { touched_paths: input.touchedPaths }
+            : {}),
+        agent: input.agent,
+        ...(input.principal ? { principal: input.principal } : {}),
+        i_base: SHADOW_I_BASE[input.action] ?? 0.2,
+        blast: blastValue,
+        impact,
+        budget,
+        spent_before: spentBefore,
+        would_gate: spentBefore + impact > budget,
+        ...(input.frontmatterDiff && Object.keys(input.frontmatterDiff).length > 0
+            ? { frontmatter_diff: input.frontmatterDiff }
+            : {}),
+        commit_message: input.commitMessage,
+    };
+    try {
+        mkdirSync(join(vaultRoot, ".daftari"), { recursive: true });
+        appendFileSync(shadowActionsPath(vaultRoot), `${JSON.stringify(record)}\n`);
+    }
+    catch (e) {
+        const reason = e instanceof Error ? e.message : String(e);
+        return err(new Error(`cannot record shadow action: ${reason}`));
+    }
+    spentByVault.set(vaultRoot, spentBefore + impact);
+    return ok(record);
+}
+// Reads the shadow log back, oldest first. Missing log = nothing shadowed.
+export async function listShadowActions(vaultRoot) {
+    let raw;
+    try {
+        raw = readFileSync(shadowActionsPath(vaultRoot), "utf-8");
+    }
+    catch (e) {
+        if (e.code === "ENOENT")
+            return ok([]);
+        const reason = e instanceof Error ? e.message : String(e);
+        return err(new Error(`cannot read shadow actions: ${reason}`));
+    }
+    const records = [];
+    for (const line of raw.split("\n")) {
+        const trimmed = line.trim();
+        if (!trimmed)
+            continue;
+        try {
+            const rec = JSON.parse(trimmed);
+            if (typeof rec.at === "string" && typeof rec.action === "string")
+                records.push(rec);
+        }
+        catch {
+            // Skip a corrupt line; the log is append-only and best-effort.
+        }
+    }
+    return ok(records);
+}
+export const SHADOW_LINT_RECENT_LIMIT = 20;
+export async function shadowLintSummary(vaultRoot) {
+    const all = await listShadowActions(vaultRoot);
+    if (!all.ok)
+        return all;
+    const gated = all.value.filter((r) => r.would_gate);
+    return ok({
+        total: all.value.length,
+        gated: gated.length,
+        recentGated: gated
+            .slice(-SHADOW_LINT_RECENT_LIMIT)
+            .reverse()
+            .map((r) => ({
+            at: r.at,
+            tool: r.tool,
+            action: r.action,
+            targetPath: r.target_path,
+            agent: r.agent,
+            impact: r.impact,
+            budget: r.budget,
+        })),
+    });
+}
+//# sourceMappingURL=shadow.js.map

package/dist/curation/shadow.js.map

@@ -0,0 +1 @@
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package/dist/curation/staged-actions.d.ts

@@ -2,7 +2,6 @@ import { type Result } from "../frontmatter/types.js";
 import { type IndexDb } from "../storage/index-db.js";
 export declare const STAGED_ACTION_TYPES: readonly ["promote", "deprecate", "supersede", "merge", "confidence-up"];
 export type StagedActionType = (typeof STAGED_ACTION_TYPES)[number];
-export declare const DEFERRED_ACTION_TYPES: readonly StagedActionType[];
 export declare const DEFAULT_TTL_DAYS = 14;
 export declare const STAGED_ACTION_STATUSES: readonly ["pending", "ratified", "rejected", "expired", "ratified-pending-tool"];
 export type StagedActionStatus = (typeof STAGED_ACTION_STATUSES)[number];

package/dist/curation/staged-actions.d.ts.map

@@ -1 +1 @@
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package/dist/curation/staged-actions.js

@@ -30,9 +30,10 @@ import { join } from "node:path";
 import { err, ok } from "../frontmatter/types.js";
 import { getProvider } from "../search/vector.js";
 import { clearStagedActions, openIndexDb, upsertStagedAction, } from "../storage/index-db.js";
-// The action verbs the queue understands. `promote` and `deprecate` dispatch to
-// existing write tools on ratify; the rest are STAGED ONLY in v1 and dispatch
-// is deferred to §11.4 (vault_supersede / vault_merge / vault_set_confidence).
+// The action verbs the queue understands. Each dispatches to a write tool on
+// ratify (§11.4 completed the set): promote → vault_promote, deprecate →
+// vault_deprecate, supersede → vault_supersede, confidence-up →
+// vault_set_confidence, merge → vault_merge.
 export const STAGED_ACTION_TYPES = [
     "promote",
     "deprecate",
@@ -40,16 +41,11 @@ export const STAGED_ACTION_TYPES = [
     "merge",
     "confidence-up",
 ];
-// Action types whose ratify dispatch is deferred to §11.4. Approving one of
-// these is recorded as `ratified-pending-tool` and applies nothing.
-export const DEFERRED_ACTION_TYPES = [
-    "supersede",
-    "merge",
-    "confidence-up",
-];
 export const DEFAULT_TTL_DAYS = 14;
 // The lifecycle states a staged action moves through. `ratified-pending-tool`
-// is the terminal state for an approved-but-deferred action (§11.4).
+// is a legacy terminal state from v1.17 (before §11.4 wired up the
+// supersede/merge/confidence-up write tools); it is no longer produced but is
+// kept here so a record written then still collapses to a known status.
 export const STAGED_ACTION_STATUSES = [
     "pending",
     "ratified",

package/dist/curation/staged-actions.js.map

@@ -1 +1 @@
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package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAwCA,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CASrE;AAED,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,MAAM,GAAG,IAAI,CAE3D;AAED,wBAAsB,IAAI,CAAC,IAAI,GAAE,MAAM,EAA0B,GAAG,OAAO,CAAC,IAAI,CAAC,CAuIhF"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAyCA,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CASrE;AAED,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,MAAM,GAAG,IAAI,CAE3D;AAED,wBAAsB,IAAI,CAAC,IAAI,GAAE,MAAM,EAA0B,GAAG,OAAO,CAAC,IAAI,CAAC,CA+IhF"}

package/dist/index.js

@@ -17,6 +17,7 @@ import { resolve } from "node:path";
 import { pathToFileURL } from "node:url";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
 import { GUEST_ROLE, resolveAccess } from "./access/rbac.js";
+import { materializeEdges } from "./curation/edges.js";
 import { materializeStagedActions } from "./curation/staged-actions.js";
 import { acquireLock, releaseLock } from "./lifecycle/lock.js";
 import { markIndexError, markIndexing, markIndexReady, setIndexProgress, } from "./search/index-state.js";
@@ -28,7 +29,7 @@ import { directoryExists } from "./storage/local.js";
 import { loadConfig } from "./utils/config.js";
 // Kept in sync with package.json. Surfaced in the process lockfile for
 // operator diagnostics. Bump both together on a release.
-const DAFTARI_VERSION = "1.19.0";
+const DAFTARI_VERSION = "1.21.0";
 // Reads `--name value` or `--name=value` from argv; null if absent.
 export function parseFlag(argv, name) {
     const flag = `--${name}`;
@@ -145,6 +146,12 @@ export async function main(argv = process.argv.slice(2)) {
         if (!materialized.ok) {
             process.stderr.write(`daftari: warning: could not rebuild staged-actions index: ${materialized.error.message}\n`);
         }
+        // Same for the derives_from edge store (spec §11.3): edges may have been
+        // observed since the last reindex without any file changing.
+        const edgesMaterialized = materializeEdges(vaultRoot);
+        if (!edgesMaterialized.ok) {
+            process.stderr.write(`daftari: warning: could not rebuild derives_from index: ${edgesMaterialized.error.message}\n`);
+        }
         // Fresh index means a fully-cached state: no embedding work was done, so
         // the model is still cold. Warm it in the background (if config allows)
         // so the first user search does not pay the ~500ms cold start. Then

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/search/reindex.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"reindex.d.ts","sourceRoot":"","sources":["../../src/search/reindex.ts"],"names":[],"mappings":"AAsBA,OAAO,EAAW,KAAK,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAmH/D,wBAAsB,YAAY,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CActE;AAED,MAAM,WAAW,aAAa;IAC5B,aAAa,EAAE,MAAM,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,OAAO,CAAC;IACvB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAIlB,aAAa,EAAE,MAAM,CAAC;IACtB,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,EAAE,MAAM,CAAC;CACxB;AAED,MAAM,WAAW,cAAc;IAM7B,UAAU,CAAC,EAAE,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,IAAI,CAAC;CACpD;AA+FD,wBAAsB,YAAY,CAChC,SAAS,EAAE,MAAM,EACjB,IAAI,GAAE,cAAmB,GACxB,OAAO,CAAC,MAAM,CAAC,aAAa,EAAE,KAAK,CAAC,CAAC,CAoHvC;AAED,MAAM,WAAW,mBAAmB;IAClC,UAAU,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,OAAO,CAAC;CACxB;AASD,wBAAsB,aAAa,CACjC,SAAS,EAAE,MAAM,EACjB,OAAO,EAAE,MAAM,GACd,OAAO,CAAC,MAAM,CAAC,mBAAmB,EAAE,KAAK,CAAC,CAAC,CAyG7C"}
+{"version":3,"file":"reindex.d.ts","sourceRoot":"","sources":["../../src/search/reindex.ts"],"names":[],"mappings":"AAuBA,OAAO,EAAW,KAAK,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAmH/D,wBAAsB,YAAY,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CActE;AAED,MAAM,WAAW,aAAa;IAC5B,aAAa,EAAE,MAAM,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,OAAO,CAAC;IACvB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAIlB,aAAa,EAAE,MAAM,CAAC;IACtB,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,EAAE,MAAM,CAAC;CACxB;AAED,MAAM,WAAW,cAAc;IAM7B,UAAU,CAAC,EAAE,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,IAAI,CAAC;CACpD;AA+FD,wBAAsB,YAAY,CAChC,SAAS,EAAE,MAAM,EACjB,IAAI,GAAE,cAAmB,GACxB,OAAO,CAAC,MAAM,CAAC,aAAa,EAAE,KAAK,CAAC,CAAC,CAwHvC;AAED,MAAM,WAAW,mBAAmB;IAClC,UAAU,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,OAAO,CAAC;CACxB;AASD,wBAAsB,aAAa,CACjC,SAAS,EAAE,MAAM,EACjB,OAAO,EAAE,MAAM,GACd,OAAO,CAAC,MAAM,CAAC,mBAAmB,EAAE,KAAK,CAAC,CAAC,CAyG7C"}

package/dist/search/reindex.js

@@ -17,6 +17,7 @@
 // inserted, so the join in vector.ts comes back null and search degrades to
 // lexical-only.
 import { stat } from "node:fs/promises";
+import { rebuildEdgesIndex } from "../curation/edges.js";
 import { rebuildStagedActionsIndex } from "../curation/staged-actions.js";
 import { parseDocument } from "../frontmatter/parser.js";
 import { err, ok } from "../frontmatter/types.js";
@@ -298,6 +299,9 @@ export async function reindexVault(vaultRoot, opts = {}) {
         // keeps it in sync after a cold start or a manual index wipe. Best-effort:
         // the staging queue lives in the jsonl, so a rebuild miss never loses data.
         rebuildStagedActionsIndex(db, vaultRoot);
+        // Same posture for the derives_from edge store: the jsonl is canonical;
+        // this table is the loop's concurrent-read surface (spec §11.3).
+        rebuildEdgesIndex(db, vaultRoot);
         // Rebuild the sqlite-vec mirror from the durable `embeddings` cache.
         // The cache is per-(model, content_hash) and is the source of truth;
         // the mirror is a SQL-queryable index of it. We rebuild rather than

package/dist/search/reindex.js.map

@@ -1 +1 @@
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package/dist/server.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../src/server.ts"],"names":[],"mappings":"AAQA,OAAO,EAAE,MAAM,EAAE,MAAM,2CAA2C,CAAC;AAEnE,OAAO,EAAE,KAAK,aAAa,EAAe,MAAM,kBAAkB,CAAC;AAQnE,eAAO,MAAM,WAAW,YAAY,CAAC;AAQrC,eAAO,MAAM,cAAc,QAAmB,CAAC;AAK/C,wBAAgB,YAAY,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,GAAE,aAA6B,GAAG,MAAM,CA8D7F"}
+{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../src/server.ts"],"names":[],"mappings":"AAQA,OAAO,EAAE,MAAM,EAAE,MAAM,2CAA2C,CAAC;AAEnE,OAAO,EAAE,KAAK,aAAa,EAAe,MAAM,kBAAkB,CAAC;AASnE,eAAO,MAAM,WAAW,YAAY,CAAC;AAQrC,eAAO,MAAM,cAAc,QAAmB,CAAC;AAK/C,wBAAgB,YAAY,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,GAAE,aAA6B,GAAG,MAAM,CA+D7F"}

package/dist/server.js

@@ -9,6 +9,7 @@ import { Server } from "@modelcontextprotocol/sdk/server/index.js";
 import { CallToolRequestSchema, ListToolsRequestSchema } from "@modelcontextprotocol/sdk/types.js";
 import { guestAccess } from "./access/rbac.js";
 import { curationTools } from "./tools/curation.js";
+import { edgeTools } from "./tools/edges.js";
 import { readTools } from "./tools/read.js";
 import { searchTools } from "./tools/search.js";
 import { stagedActionTools } from "./tools/staged-actions.js";
@@ -32,6 +33,7 @@ export function createServer(vaultRoot, access = guestAccess()) {
         ...writeTools,
         ...curationTools,
         ...stagedActionTools,
+        ...edgeTools,
     ];
     const byName = new Map(tools.map((t) => [t.name, t]));
     server.setRequestHandler(ListToolsRequestSchema, async () => ({

package/dist/server.js.map

@@ -1 +1 @@
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package/dist/storage/index-db.d.ts

@@ -70,4 +70,17 @@ export declare function clearStagedActions(db: IndexDb): void;
 export declare function getStagedAction(db: IndexDb, id: string): StagedActionRow | null;
 export declare function getAllStagedActions(db: IndexDb): StagedActionRow[];
 export declare function getStagedActionsByStatus(db: IndexDb, status: string): StagedActionRow[];
+export interface DerivesFromEdgeRow {
+    from_path: string;
+    to_path: string;
+    strength: number;
+    k_survived: number;
+    first_observed: string;
+    last_rederived: string;
+    last_age_decay: string;
+    status: string;
+}
+export declare function upsertDerivesFromEdge(db: IndexDb, row: DerivesFromEdgeRow): void;
+export declare function clearDerivesFromEdges(db: IndexDb): void;
+export declare function getAllDerivesFromEdges(db: IndexDb): DerivesFromEdgeRow[];
 //# sourceMappingURL=index-db.d.ts.map

package/dist/storage/index-db.d.ts.map

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