ctxr-cli 0.4.1 → 0.6.0

package/dist/core/git/worktree.js.map

@@ -1 +1 @@
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+{"version":3,"file":"worktree.js","sourceRoot":"","sources":["../../../src/core/git/worktree.ts"],"names":[],"mappings":"AAEA,MAAM,CAAC,KAAK,UAAU,SAAS,CAAC,GAAc,EAAE,GAAW,EAAE,IAAI,GAAG,QAAQ;IAC1E,MAAM,MAAM,GAAG,MAAM,GAAG,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,EAAE,EAAE,GAAG,EAAE,YAAY,EAAE,IAAI,EAAE,CAAC,CAAC;IACtE,IAAI,MAAM,CAAC,QAAQ,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC;IACxC,OAAO,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;AAClD,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,CAAC,KAAK,UAAU,WAAW,CAAC,GAAc,EAAE,GAAW,EAAE,MAAc,EAAE,MAAM,GAAG,QAAQ;IAC9F,MAAM,MAAM,GAAG,MAAM,GAAG,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,EAAE,GAAG,EAAE,YAAY,EAAE,IAAI,EAAE,CAAC,CAAC;IACrF,OAAO,MAAM,CAAC,QAAQ,KAAK,CAAC,CAAC;AAC/B,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,WAAW,CAC/B,GAAc,EACd,GAAW,EACX,YAAoB,EACpB,SAAiB,EACjB,UAAkB;IAElB,MAAM,GAAG,CAAC,GAAG,CAAC,CAAC,UAAU,EAAE,KAAK,EAAE,IAAI,EAAE,SAAS,EAAE,YAAY,EAAE,UAAU,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,CAAC;AACzF,CAAC;AASD,gGAAgG;AAChG,MAAM,UAAU,iBAAiB,CAAC,SAAiB;IACjD,MAAM,MAAM,GAAG,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;IAC5E,MAAM,KAAK,GAAmB,EAAE,CAAC;IACjC,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;QAC3B,MAAM,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;QAChC,IAAI,YAAY,GAAG,EAAE,CAAC;QACtB,IAAI,IAAI,GAAG,EAAE,CAAC;QACd,IAAI,MAAM,GAAkB,IAAI,CAAC;QACjC,IAAI,MAAM,GAAG,KAAK,CAAC;QACnB,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;YACzB,IAAI,IAAI,CAAC,UAAU,CAAC,WAAW,CAAC;gBAAE,YAAY,GAAG,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;iBAC3E,IAAI,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;gBAAE,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;iBAChE,IAAI,IAAI,CAAC,UAAU,CAAC,SAAS,CAAC;gBAAE,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC,gBAAgB,EAAE,EAAE,CAAC,CAAC;iBACpG,IAAI,IAAI,KAAK,QAAQ,IAAI,IAAI,CAAC,UAAU,CAAC,SAAS,CAAC;gBAAE,MAAM,GAAG,IAAI,CAAC;QAC1E,CAAC;QACD,IAAI,YAAY;YAAE,KAAK,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,YAAY,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC;IAC7E,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,aAAa,CAAC,GAAc,EAAE,GAAW;IAC7D,MAAM,MAAM,GAAG,MAAM,GAAG,CAAC,GAAG,CAAC,CAAC,UAAU,EAAE,MAAM,EAAE,aAAa,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,CAAC;IAC3E,OAAO,iBAAiB,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;AAC1C,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,CAAC,KAAK,UAAU,gBAAgB,CAAC,GAAc,EAAE,GAAW;IAChE,MAAM,SAAS,GAAG,MAAM,aAAa,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC;IAChD,OAAO,SAAS,CAAC,CAAC,CAAC,EAAE,IAAI,IAAI,GAAG,CAAC;AACnC,CAAC"}

package/dist/core/graph/model.d.ts

@@ -72,6 +72,20 @@ export declare function extractLinkTargets(body: string): string[];
  * link, consistent with "two same-named notes are a valid, expected state"
  * (the node-identity requirement's own scenario).
  */
+/**
+ * The filename-stem -> path(s) index every wikilink resolution in the
+ * system reads (the graph build here, and local-browsing-surface's
+ * link-resolver) — factored out so both consult exactly one index and can't
+ * silently diverge on what a stem resolves to.
+ */
+export declare function buildStemIndex(notes: readonly Note[]): Map<string, string[]>;
+export type StemResolution = {
+    path: string;
+} | {
+    reason: DanglingReason;
+};
+/** Classifies a wikilink target against a stem index — exactly one match resolves, zero or many don't. */
+export declare function resolveStem(stemIndex: ReadonlyMap<string, string[]>, target: string): StemResolution;
 export declare function buildGraphFromNotes(notes: readonly Note[], options?: GraphBuildOptions): GraphBuildResult;
 /** The build options a store's configuration implies — the one place config is translated for the graph. */
 export declare function graphBuildOptions(config: {

package/dist/core/graph/model.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"model.d.ts","sourceRoot":"","sources":["../../../src/core/graph/model.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAC;AAE7C;;;;;;;;;;GAUG;AACH,MAAM,WAAW,SAAS;IACxB,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,MAAM,cAAc,GAAG,WAAW,GAAG,WAAW,CAAC;AAEvD,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,cAAc,CAAC;CACxB;AAED,kGAAkG;AAClG,eAAO,MAAM,cAAc,SAAS,CAAC;AAErC,MAAM,WAAW,SAAS;IACxB,GAAG,EAAE,MAAM,CAAC;IACZ,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,gBAAgB;IAC/B,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,QAAQ,EAAE,YAAY,EAAE,CAAC;CAC1B;AAED,MAAM,WAAW,iBAAiB;IAChC,8HAA8H;IAC9H,SAAS,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IAC9B,6FAA6F;IAC7F,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED,eAAO,MAAM,qBAAqB,IAAI,CAAC;AACvC,mEAAmE;AACnE,eAAO,MAAM,YAAY,WAAW,CAAC;AAErC,wBAAgB,SAAS,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,GAAE,MAA8B,GAAG,MAAM,CAIzF;AAKD,MAAM,WAAW,cAAc;IAC7B,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;CACd;AAMD;;;;;;;;GAQG;AACH,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,EAAE,SAAS,GAAE,SAAS,MAAM,EAAO,GAAG,cAAc,EAAE,CAuB9F;AAYD,uIAAuI;AACvI,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,EAAE,CAEzD;AAED;;;;;;;;;;;;GAYG;AACH;;;;;GAKG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,SAAS,IAAI,EAAE,GAAG,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAS5E;AAED,MAAM,MAAM,cAAc,GAAG;IAAE,IAAI,EAAE,MAAM,CAAA;CAAE,GAAG;IAAE,MAAM,EAAE,cAAc,CAAA;CAAE,CAAC;AAE3E,0GAA0G;AAC1G,wBAAgB,WAAW,CAAC,SAAS,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,MAAM,GAAG,cAAc,CAKpG;AAED,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,SAAS,IAAI,EAAE,EAAE,OAAO,GAAE,iBAAsB,GAAG,gBAAgB,CA2B7G;AAED,4GAA4G;AAC5G,wBAAgB,iBAAiB,CAAC,MAAM,EAAE;IAAE,SAAS,EAAE;QAAE,SAAS,EAAE,SAAS,MAAM,EAAE,CAAC;QAAC,KAAK,EAAE;YAAE,aAAa,EAAE,MAAM,CAAA;SAAE,CAAA;KAAE,CAAA;CAAE,GAAG,iBAAiB,CAE9I"}

package/dist/core/graph/model.js

@@ -77,6 +77,31 @@ export function extractLinkTargets(body) {
  * link, consistent with "two same-named notes are a valid, expected state"
  * (the node-identity requirement's own scenario).
  */
+/**
+ * The filename-stem -> path(s) index every wikilink resolution in the
+ * system reads (the graph build here, and local-browsing-surface's
+ * link-resolver) — factored out so both consult exactly one index and can't
+ * silently diverge on what a stem resolves to.
+ */
+export function buildStemIndex(notes) {
+    const stemIndex = new Map();
+    for (const note of notes) {
+        const stem = path.basename(note.path, '.md');
+        const list = stemIndex.get(stem) ?? [];
+        list.push(note.path);
+        stemIndex.set(stem, list);
+    }
+    return stemIndex;
+}
+/** Classifies a wikilink target against a stem index — exactly one match resolves, zero or many don't. */
+export function resolveStem(stemIndex, target) {
+    const resolved = stemIndex.get(target);
+    if (!resolved)
+        return { reason: 'not_found' };
+    if (resolved.length > 1)
+        return { reason: 'ambiguous' };
+    return { path: resolved[0] };
+}
 export function buildGraphFromNotes(notes, options = {}) {
     const idCounts = new Map();
     for (const note of notes)
@@ -85,28 +110,19 @@ export function buildGraphFromNotes(notes, options = {}) {
     if (collisions.length > 0) {
         throw new GraphIdentityCollisionError(collisions);
     }
-    const stemIndex = new Map();
-    for (const note of notes) {
-        const stem = path.basename(note.path, '.md');
-        const list = stemIndex.get(stem) ?? [];
-        list.push(note.path);
-        stemIndex.set(stem, list);
-    }
+    const stemIndex = buildStemIndex(notes);
     const depth = options.clusterDepth ?? DEFAULT_CLUSTER_DEPTH;
     const nodes = notes.map((n) => ({ id: n.path, path: n.path, cluster: clusterOf(n.path, depth) }));
     const edges = [];
     const dangling = [];
     for (const note of notes) {
         for (const { target, type } of extractLinks(note.body, options.relations ?? [])) {
-            const resolved = stemIndex.get(target);
-            if (!resolved) {
-                dangling.push({ from: note.path, target, reason: 'not_found' });
-            }
-            else if (resolved.length > 1) {
-                dangling.push({ from: note.path, target, reason: 'ambiguous' });
+            const resolution = resolveStem(stemIndex, target);
+            if ('reason' in resolution) {
+                dangling.push({ from: note.path, target, reason: resolution.reason });
             }
             else {
-                edges.push({ src: note.path, dst: resolved[0], type });
+                edges.push({ src: note.path, dst: resolution.path, type });
             }
         }
     }

package/dist/core/graph/model.js.map

@@ -1 +1 @@
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package/dist/core/harness/bridge.d.ts

@@ -0,0 +1,30 @@
+import type { StoreConfig } from '../../config/schema.js';
+export interface HarnessBridgeResult {
+    /** The harness-generation adapter id this bridge is for. */
+    harness: string;
+    /** Store-relative harness skills directory that was bridged. */
+    path: string;
+    mode: 'symlink' | 'copy';
+}
+/**
+ * The effective skills directory for a configured harness-generation
+ * adapter: a store's own override (`adapters[].skills_dir`) takes
+ * precedence over the adapter's declared default.
+ */
+export declare function effectiveSkillsDir(config: StoreConfig, adapterId: string, adapterDefault: string): string;
+/**
+ * Bridges every declared harness-generation adapter's skills directory to
+ * the store's configured (canonical) skills path — never derived by
+ * inspecting the host machine, always from configuration. An adapter whose
+ * effective directory already equals the canonical path needs no bridge and
+ * is silently skipped. Returns only the harnesses that actually changed.
+ */
+export declare function bridgeHarnessSkills(root: string, config: StoreConfig): Promise<HarnessBridgeResult[]>;
+/**
+ * Read-only counterpart for `ctxr doctor`: true when a declared harness's
+ * skills directory is broken — materialized as something other than a
+ * bridge to canonical — without writing anything. Mirrors `ensureBridge`'s
+ * detection exactly; only the repair action differs.
+ */
+export declare function isBridgeBroken(root: string, canonicalPath: string, harnessDir: string): Promise<boolean>;
+//# sourceMappingURL=bridge.d.ts.map

package/dist/core/harness/bridge.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"bridge.d.ts","sourceRoot":"","sources":["../../../src/core/harness/bridge.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAE1D,MAAM,WAAW,mBAAmB;IAClC,4DAA4D;IAC5D,OAAO,EAAE,MAAM,CAAC;IAChB,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,SAAS,GAAG,MAAM,CAAC;CAC1B;AA+HD;;;;GAIG;AACH,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,GAAG,MAAM,CAGzG;AAED;;;;;;GAMG;AACH,wBAAsB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,mBAAmB,EAAE,CAAC,CAmB3G;AAED;;;;;GAKG;AACH,wBAAsB,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,aAAa,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAM9G"}

package/dist/core/harness/bridge.js

@@ -0,0 +1,178 @@
+import { cp, lstat, mkdir, readFile, readdir, realpath, rm, symlink } from 'node:fs/promises';
+import path from 'node:path';
+import { configuredAdapters } from '../../adapters/registry.js';
+/** Resolves a path to its real path, or itself (as an absolute path) if it does not exist. */
+async function realOrSelf(p) {
+    try {
+        return await realpath(p);
+    }
+    catch {
+        return path.resolve(p);
+    }
+}
+/**
+ * Resolves a path's PARENT through symlinks, keeping the final path
+ * component literal. Handles the case where a parent directory (e.g. the
+ * store root itself) is reached through a link, so two paths that are
+ * physically the same location but written with different parent spellings
+ * still compare equal.
+ */
+async function realParentPlusBase(p) {
+    const resolved = path.resolve(p);
+    const dir = path.dirname(resolved);
+    const base = path.basename(resolved);
+    try {
+        const realDir = await realpath(dir);
+        return path.join(realDir, base);
+    }
+    catch {
+        return resolved;
+    }
+}
+/**
+ * True when `harnessAbs` already resolves to the same real location as
+ * `canonicalAbs` — directly, or through a symlinked parent directory.
+ * Checked both ways so neither a symlinked store root nor a symlinked
+ * canonical directory causes a bridge that is already correct to be
+ * rewritten, or — worse — the canonical directory to be deleted out from
+ * under itself.
+ */
+async function alreadyBridged(canonicalAbs, harnessAbs) {
+    const [realCanonical, realHarness] = await Promise.all([realOrSelf(canonicalAbs), realOrSelf(harnessAbs)]);
+    if (realCanonical === realHarness)
+        return true;
+    const [canonicalViaParent, harnessViaParent] = await Promise.all([realParentPlusBase(canonicalAbs), realParentPlusBase(harnessAbs)]);
+    return canonicalViaParent === harnessViaParent;
+}
+/** True only for a real directory — false for a symlink (even one pointing at a directory), so a misdirected link is always repaired rather than judged by its target's contents. */
+async function isPlainDirectory(p) {
+    try {
+        return (await lstat(p)).isDirectory();
+    }
+    catch {
+        return false;
+    }
+}
+async function readDirTree(root, sub = '') {
+    const result = new Map();
+    let entries;
+    try {
+        entries = await readdir(path.join(root, sub), { withFileTypes: true });
+    }
+    catch {
+        return result;
+    }
+    for (const entry of entries) {
+        const rel = sub ? `${sub}/${entry.name}` : entry.name;
+        if (entry.isDirectory()) {
+            for (const [k, v] of await readDirTree(root, rel))
+                result.set(k, v);
+        }
+        else if (entry.isFile()) {
+            result.set(rel, await readFile(path.join(root, rel), 'utf8'));
+        }
+    }
+    return result;
+}
+/** Whole-tree byte comparison — cheap at skill-directory scale, and simpler than tracking per-file mtimes. */
+async function directoriesMatch(a, b) {
+    const [treeA, treeB] = await Promise.all([readDirTree(a), readDirTree(b)]);
+    if (treeA.size !== treeB.size)
+        return false;
+    for (const [rel, content] of treeA) {
+        if (treeB.get(rel) !== content)
+            return false;
+    }
+    return true;
+}
+async function createDirSymlink(canonicalAbs, harnessAbs) {
+    await mkdir(path.dirname(harnessAbs), { recursive: true });
+    // A relative target keeps the link correct across a clone at a different absolute path.
+    const relativeTarget = path.relative(path.dirname(harnessAbs), canonicalAbs);
+    try {
+        await symlink(relativeTarget, harnessAbs, 'dir');
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+async function copySkillsInto(canonicalAbs, harnessAbs) {
+    await mkdir(harnessAbs, { recursive: true });
+    await cp(canonicalAbs, harnessAbs, { recursive: true });
+}
+/**
+ * harness-portability spec (vendored-craft-skills): makes `harnessAbs`
+ * resolve to `canonicalAbs`, preferring a directory symlink and falling
+ * back to a recursive copy when one cannot be created. Idempotent: a
+ * directory that already resolves to canonical (directly, through a
+ * symlinked parent, or as a copy whose content still matches) is left
+ * untouched and reported as unchanged. A symlink that does not resolve to
+ * canonical is always replaced regardless of what it currently points at —
+ * never judged "close enough" by its target's contents — which is what
+ * makes a misdirected or materialized-as-a-file bridge repairable rather
+ * than silently tolerated.
+ */
+async function ensureBridge(canonicalAbs, harnessAbs) {
+    if (await alreadyBridged(canonicalAbs, harnessAbs))
+        return 'unchanged';
+    if ((await isPlainDirectory(harnessAbs)) && (await directoriesMatch(canonicalAbs, harnessAbs))) {
+        return 'unchanged';
+    }
+    await rm(harnessAbs, { recursive: true, force: true });
+    if (await createDirSymlink(canonicalAbs, harnessAbs))
+        return 'symlink';
+    await copySkillsInto(canonicalAbs, harnessAbs);
+    return 'copy';
+}
+/**
+ * The effective skills directory for a configured harness-generation
+ * adapter: a store's own override (`adapters[].skills_dir`) takes
+ * precedence over the adapter's declared default.
+ */
+export function effectiveSkillsDir(config, adapterId, adapterDefault) {
+    const declaration = config.adapters.find((d) => d.kind === 'harness-generation' && d.id === adapterId);
+    return declaration?.skills_dir ?? adapterDefault;
+}
+/**
+ * Bridges every declared harness-generation adapter's skills directory to
+ * the store's configured (canonical) skills path — never derived by
+ * inspecting the host machine, always from configuration. An adapter whose
+ * effective directory already equals the canonical path needs no bridge and
+ * is silently skipped. Returns only the harnesses that actually changed.
+ */
+export async function bridgeHarnessSkills(root, config) {
+    const canonical = config.harness.skills_path;
+    // path.resolve, not path.join: these configured paths conventionally end
+    // in "/", and fs.symlink's destination argument treats a trailing slash
+    // as "this must already be a directory" — failing with ENOENT on the
+    // (correct) case where it doesn't exist yet because we're creating it.
+    const canonicalAbs = path.resolve(root, canonical);
+    const results = [];
+    for (const adapter of configuredAdapters(config, 'harness-generation')) {
+        const harnessDir = effectiveSkillsDir(config, adapter.id, adapter.skillsDir);
+        if (harnessDir === canonical)
+            continue;
+        const harnessAbs = path.resolve(root, harnessDir);
+        const mode = await ensureBridge(canonicalAbs, harnessAbs);
+        if (mode !== 'unchanged')
+            results.push({ harness: adapter.id, path: harnessDir, mode });
+    }
+    return results;
+}
+/**
+ * Read-only counterpart for `ctxr doctor`: true when a declared harness's
+ * skills directory is broken — materialized as something other than a
+ * bridge to canonical — without writing anything. Mirrors `ensureBridge`'s
+ * detection exactly; only the repair action differs.
+ */
+export async function isBridgeBroken(root, canonicalPath, harnessDir) {
+    const canonicalAbs = path.resolve(root, canonicalPath);
+    const harnessAbs = path.resolve(root, harnessDir);
+    if (await alreadyBridged(canonicalAbs, harnessAbs))
+        return false;
+    if ((await isPlainDirectory(harnessAbs)) && (await directoriesMatch(canonicalAbs, harnessAbs)))
+        return false;
+    return true;
+}
+//# sourceMappingURL=bridge.js.map

package/dist/core/harness/bridge.js.map

@@ -0,0 +1 @@
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package/dist/core/json-config-merge.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"json-config-merge.d.ts","sourceRoot":"","sources":["../../src/core/json-config-merge.ts"],"names":[],"mappings":"AAKA,8EAA8E;AAC9E,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,SAAS;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAA;KAAE,EAAE,CAAC;IAC5E,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC;CACxB;AAED,MAAM,MAAM,cAAc,GAAG,SAAS,MAAM,EAAE,GAAG,SAAS,gBAAgB,EAAE,CAAC;AAC7E,MAAM,MAAM,UAAU,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC;AAC5F,MAAM,MAAM,WAAW,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;AAuBhG;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAsB,mBAAmB,CACvC,QAAQ,EAAE,MAAM,EAChB,KAAK,EAAE,UAAU,EACjB,OAAO,CAAC,EAAE;IAAE,MAAM,CAAC,EAAE,WAAW,CAAA;CAAE,GACjC,OAAO,CAAC;IAAE,OAAO,EAAE,OAAO,CAAA;CAAE,CAAC,CA4D/B"}
+{"version":3,"file":"json-config-merge.d.ts","sourceRoot":"","sources":["../../src/core/json-config-merge.ts"],"names":[],"mappings":"AAKA,8EAA8E;AAC9E,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,SAAS;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAA;KAAE,EAAE,CAAC;IAC5E,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC;CACxB;AAED,MAAM,MAAM,cAAc,GAAG,SAAS,MAAM,EAAE,GAAG,SAAS,gBAAgB,EAAE,CAAC;AAC7E,MAAM,MAAM,UAAU,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC;AAC5F,MAAM,MAAM,WAAW,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;AA6ChG;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAsB,mBAAmB,CACvC,QAAQ,EAAE,MAAM,EAChB,KAAK,EAAE,UAAU,EACjB,OAAO,CAAC,EAAE;IAAE,MAAM,CAAC,EAAE,WAAW,CAAA;CAAE,GACjC,OAAO,CAAC;IAAE,OAAO,EAAE,OAAO,CAAA;CAAE,CAAC,CA4D/B"}

package/dist/core/json-config-merge.js

@@ -5,19 +5,42 @@ import { writeFileAtomic } from './fs/atomic.js';
 function isHookEntryList(value) {
     return value.length > 0 && typeof value[0] === 'object' && value[0] !== null;
 }
+/** The filename a hook entry's command invokes, independent of the absolute path it's rooted at. */
+function hookCommandBasename(entry) {
+    const command = entry.hooks[0]?.command;
+    return command ? path.basename(command) : '';
+}
 /**
  * Upserts each incoming hook-matcher entry into the existing list, matched
- * by its own `hooks[0].command` (the path to contexture's generated
- * script): replaced in place when found, so regeneration is idempotent,
- * appended otherwise. Any entry with a different command — an operator's
- * own hook — is left untouched.
+ * by `(matcher, hookCommandBasename)` rather than the full command string —
+ * deliberately blind to the absolute path prefix, since that prefix is
+ * whichever checkout most recently generated it (typically a session
+ * worktree) and so is not stable across runs even for the SAME logical
+ * rule (stabilize-write-gate-hook-path). The first matching existing entry
+ * is replaced in place (preserving its position, so an unrelated
+ * hand-added entry elsewhere in the array is never reordered); any further
+ * entries that also match are dropped, so a list that has already
+ * accumulated more than one stale copy of contexture's own entry (e.g. one
+ * per session worktree that ever regenerated it) converges to exactly one
+ * on this run, not just on a version bump. An entry with a different
+ * matcher or a different script basename — an operator's own hook — is
+ * always left untouched.
  */
 function mergeHookEntries(existing, incoming) {
     let result = [...existing];
     for (const entry of incoming) {
-        const command = entry.hooks[0]?.command;
-        const index = result.findIndex((candidate) => candidate.hooks?.[0]?.command === command);
-        result = index === -1 ? [...result, entry] : result.map((candidate, i) => (i === index ? entry : candidate));
+        const isSameHook = (candidate) => candidate.matcher === entry.matcher && hookCommandBasename(candidate) === hookCommandBasename(entry);
+        let inserted = false;
+        result = result.flatMap((candidate) => {
+            if (!isSameHook(candidate))
+                return [candidate];
+            if (inserted)
+                return []; // a further stale duplicate of the same rule — drop it
+            inserted = true;
+            return [entry]; // replace the first match in place
+        });
+        if (!inserted)
+            result = [...result, entry];
     }
     return result;
 }

package/dist/core/json-config-merge.js.map

@@ -1 +1 @@
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package/dist/core/migrations/archive-destination-from-taxonomy.d.ts

@@ -0,0 +1,35 @@
+import type { Migration } from './types.js';
+/**
+ * archive-destination-from-taxonomy: `ctxr init` wrote a fixed
+ * `DEFAULT_ARCHIVE_PATH` regardless of the taxonomy it had just resolved, so
+ * every PARA store was born with `archive/` while its own taxonomy declared
+ * `archives/` — a config key pointing at a directory the store does not have.
+ * Init now asks the profile; this migration does the same for stores already
+ * on disk.
+ *
+ * Two independent halves, and the second is conditional:
+ *
+ * 1. The key rename is unconditional — every schema-5 store gets
+ *    `archive_destination`. `OrganizeSchema`'s fallback transform has already
+ *    resolved the old spelling by the time `readConfig` returns, so writing
+ *    the parsed config back is what drops `archive_path` from disk.
+ * 2. The value only changes when the store never customized it AND its
+ *    profile declares a destination of its own. An operator who deliberately
+ *    set some other path keeps it; a Zettelkasten or Diataxis store, whose
+ *    profile declares none, keeps `archive/` — for them this is a pure key
+ *    rename. A custom taxonomy resolves to no shipped profile and is left
+ *    alone for the same reason.
+ *
+ * Like 0004, the directory move is a plain filesystem rename (migrations see
+ * only `Store` — `root` + `config`, no `GitRunner`), and it is skipped when
+ * the old directory was never created. History survives either way: whatever
+ * commits this output stages a coherent delete-old/add-new diff, which
+ * `git log --follow`'s rename detection reads identically to a `git mv`.
+ *
+ * Pending-ness is `schema_version < 6`, not key presence — the rule 0002,
+ * 0004, and 0005 established, for the same reason: the fallback transform
+ * populates `archive_destination` on an unmigrated store too, so its presence
+ * cannot distinguish migrated from not.
+ */
+export declare const archiveDestinationFromTaxonomyMigration: Migration;
+//# sourceMappingURL=archive-destination-from-taxonomy.d.ts.map

package/dist/core/migrations/archive-destination-from-taxonomy.d.ts.map

@@ -0,0 +1 @@
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package/dist/core/migrations/archive-destination-from-taxonomy.js

@@ -0,0 +1,109 @@
+import { existsSync } from 'node:fs';
+import { rename } from 'node:fs/promises';
+import path from 'node:path';
+import { readConfig } from '../../config/load.js';
+import { DEFAULT_ARCHIVE_DESTINATION } from '../../config/defaults.js';
+import { renderStoreConfig } from '../../config/render.js';
+import { profileById } from '../../taxonomy/profiles.js';
+import { writeFileAtomic } from '../fs/atomic.js';
+const CONFIG_DELTA = {
+    path: 'contexture.yaml',
+    description: 'rename organize.archive_path to organize.archive_destination and set schema_version to 6',
+};
+function destinationDelta(from, to) {
+    return {
+        path: to,
+        description: `adopt the taxonomy's own archive destination, moving the default-valued archive directory from ${from} to ${to}`,
+    };
+}
+/**
+ * archive-destination-from-taxonomy: `ctxr init` wrote a fixed
+ * `DEFAULT_ARCHIVE_PATH` regardless of the taxonomy it had just resolved, so
+ * every PARA store was born with `archive/` while its own taxonomy declared
+ * `archives/` — a config key pointing at a directory the store does not have.
+ * Init now asks the profile; this migration does the same for stores already
+ * on disk.
+ *
+ * Two independent halves, and the second is conditional:
+ *
+ * 1. The key rename is unconditional — every schema-5 store gets
+ *    `archive_destination`. `OrganizeSchema`'s fallback transform has already
+ *    resolved the old spelling by the time `readConfig` returns, so writing
+ *    the parsed config back is what drops `archive_path` from disk.
+ * 2. The value only changes when the store never customized it AND its
+ *    profile declares a destination of its own. An operator who deliberately
+ *    set some other path keeps it; a Zettelkasten or Diataxis store, whose
+ *    profile declares none, keeps `archive/` — for them this is a pure key
+ *    rename. A custom taxonomy resolves to no shipped profile and is left
+ *    alone for the same reason.
+ *
+ * Like 0004, the directory move is a plain filesystem rename (migrations see
+ * only `Store` — `root` + `config`, no `GitRunner`), and it is skipped when
+ * the old directory was never created. History survives either way: whatever
+ * commits this output stages a coherent delete-old/add-new diff, which
+ * `git log --follow`'s rename detection reads identically to a `git mv`.
+ *
+ * Pending-ness is `schema_version < 6`, not key presence — the rule 0002,
+ * 0004, and 0005 established, for the same reason: the fallback transform
+ * populates `archive_destination` on an unmigrated store too, so its presence
+ * cannot distinguish migrated from not.
+ */
+export const archiveDestinationFromTaxonomyMigration = {
+    id: '0006-archive-destination-from-taxonomy',
+    fromVersion: 5,
+    toVersion: 6,
+    description: "Rename the organize.archive_path config key to organize.archive_destination, adopt the taxonomy profile's own archive destination when the value still sat at the shipped default, and bump schema_version to 6.",
+    async plan(store) {
+        if (store.config.schema_version >= 6)
+            return [];
+        const deltas = [CONFIG_DELTA];
+        const target = taxonomyDestination(store.config.taxonomy.profile, store.config.organize.archive_destination);
+        if (target)
+            deltas.push(destinationDelta(DEFAULT_ARCHIVE_DESTINATION, target));
+        return deltas;
+    },
+    async apply(store) {
+        if (store.config.schema_version >= 6)
+            return [];
+        const configPath = path.join(store.root, 'contexture.yaml');
+        const currentConfig = await readConfig(store.root);
+        const appliedDeltas = [CONFIG_DELTA];
+        let destination = currentConfig.organize.archive_destination;
+        const target = taxonomyDestination(currentConfig.taxonomy.profile, destination);
+        if (target) {
+            const oldDir = path.join(store.root, DEFAULT_ARCHIVE_DESTINATION);
+            const newDir = path.join(store.root, target);
+            // Absent whenever nothing was ever archived — only the config changes.
+            if (existsSync(oldDir) && !existsSync(newDir)) {
+                await rename(oldDir, newDir);
+            }
+            destination = target;
+            appliedDeltas.push(destinationDelta(DEFAULT_ARCHIVE_DESTINATION, target));
+        }
+        const nextConfig = {
+            ...currentConfig,
+            schema_version: 6,
+            organize: { ...currentConfig.organize, archive_destination: destination },
+        };
+        await writeFileAtomic(configPath, renderStoreConfig(nextConfig));
+        return appliedDeltas;
+    },
+};
+/**
+ * The profile's own destination, but only when adopting it is safe: the
+ * store must still be sitting on the shipped default (otherwise the value is
+ * the operator's, not ours to rewrite), the profile must be a shipped one
+ * that declares a destination, and it must actually differ from what's
+ * already configured.
+ */
+function taxonomyDestination(profileId, current) {
+    if (current !== DEFAULT_ARCHIVE_DESTINATION)
+        return undefined;
+    if (profileId === null)
+        return undefined;
+    const declared = profileById(profileId)?.archiveDestination;
+    if (declared === undefined || declared === current)
+        return undefined;
+    return declared;
+}
+//# sourceMappingURL=archive-destination-from-taxonomy.js.map

package/dist/core/migrations/archive-destination-from-taxonomy.js.map

@@ -0,0 +1 @@
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package/dist/core/migrations/drop-forge-and-workspaces-external.d.ts

@@ -0,0 +1,19 @@
+import type { Migration } from './types.js';
+/**
+ * session-keeps-only-what-git-cannot-do (design D2): `ctxr session
+ * submit`/`land`/`abandon`/`reap` and the `forge` adapter kind are removed;
+ * `session.workspaces_external` goes with them, its skill-rendering half
+ * never having worked as shipped. Both legacy shapes are ALREADY stripped
+ * by the time `readConfig` returns — the adapters field's lenient schema
+ * transform drops a `kind: forge` entry (session-keeps-only-what-git-cannot-do
+ * D2), and `SessionSchema`'s default strip-unknown-keys behavior drops
+ * `workspaces_external` — so this migration's only real work is bumping
+ * `schema_version` and writing the already-clean config back to disk.
+ *
+ * Pending-ness is `schema_version < 5`, not key presence — the same rule
+ * 0002 and 0004 established, for the same reason: an unmigrated store
+ * already parses as though the legacy shape were gone, so its presence in
+ * the parsed config can't distinguish migrated from not.
+ */
+export declare const dropForgeAndWorkspacesExternalMigration: Migration;
+//# sourceMappingURL=drop-forge-and-workspaces-external.d.ts.map

package/dist/core/migrations/drop-forge-and-workspaces-external.d.ts.map

@@ -0,0 +1 @@
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