ctxr-cli 0.4.1 → 0.6.0

package/dist/commands/publish-new.js

@@ -0,0 +1,86 @@
+import { existsSync } from 'node:fs';
+import { mkdir } from 'node:fs/promises';
+import path from 'node:path';
+import { PublishReservedSlugError, PublishSlugExistsError } from '../core/errors.js';
+import { ExitCode } from '../core/exit-codes.js';
+import { writeFileAtomic } from '../core/fs/atomic.js';
+export const requires = { store: 'required' };
+/** publish spec: reserved for frozen snapshots — a living page's slug must never collide with this shape. */
+const RESERVED_SLUG_PATTERN = /^\d{4}-/;
+function pageSkeleton(slug, dateCreated) {
+    return [
+        '<!doctype html>',
+        '<html lang="en">',
+        '<head>',
+        '<meta charset="utf-8">',
+        '<meta name="viewport" content="width=device-width, initial-scale=1">',
+        `<title>${slug}</title>`,
+        '<style>',
+        '@media print {',
+        '  .no-print { display: none; }',
+        '}',
+        '</style>',
+        '</head>',
+        '<body>',
+        `<p class="meta"><span>${dateCreated}</span> &middot; <a href="./README.md">spec</a></p>`,
+        '<main>',
+        '<!-- Build the bespoke representation here. -->',
+        '</main>',
+        '</body>',
+        '</html>',
+        '',
+    ].join('\n');
+}
+function readmeSkeleton(slug, dateCreated) {
+    return [
+        `# ${slug}`,
+        '',
+        `date-created: ${dateCreated}`,
+        '',
+        '## Intent',
+        '',
+        "One sentence: what does this page let the viewer DO that its source notes couldn't?",
+        '',
+        '## Source notes',
+        '',
+        'Wikilinks back into the store. The notes are the source of truth; this page is a representation of them.',
+        '',
+        '## Audience & use',
+        '',
+        'Who is this for, and in what setting will they use it?',
+        '',
+        '## Spec / prompt',
+        '',
+        'The brief that produced index.html. Keep this so the page is regenerable.',
+        '',
+    ].join('\n');
+}
+/**
+ * publish spec: fixes a page's identity once. Refuses a slug that collides
+ * with the reserved dated-snapshot naming pattern, and never overwrites an
+ * existing page folder — the caller updates in place by editing the
+ * existing files directly, never by re-running this command.
+ */
+export async function execute(store, flags) {
+    if (RESERVED_SLUG_PATTERN.test(flags.slug)) {
+        throw new PublishReservedSlugError(flags.slug);
+    }
+    const relativePath = path.join(store.config.publish.path, flags.slug).split(path.sep).join('/');
+    const absolutePath = path.join(store.root, relativePath);
+    if (existsSync(absolutePath)) {
+        throw new PublishSlugExistsError(flags.slug, relativePath);
+    }
+    const dateCreated = new Date().toISOString().slice(0, 10);
+    await mkdir(absolutePath, { recursive: true });
+    await writeFileAtomic(path.join(absolutePath, 'index.html'), pageSkeleton(flags.slug, dateCreated));
+    await writeFileAtomic(path.join(absolutePath, 'README.md'), readmeSkeleton(flags.slug, dateCreated));
+    return {
+        exitCode: ExitCode.Ok,
+        data: { slug: flags.slug, path: relativePath },
+        findings: [],
+        humanSummary: `Created "${relativePath}".`,
+        storeRoot: store.root,
+        schemaVersion: store.config.schema_version,
+    };
+}
+//# sourceMappingURL=publish-new.js.map

package/dist/commands/publish-new.js.map

@@ -0,0 +1 @@
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package/dist/commands/rollup-write.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"rollup-write.d.ts","sourceRoot":"","sources":["../../src/commands/rollup-write.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AAC1E,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,gBAAgB,CAAC;AAO7C,OAAO,EAAmB,YAAY,EAAE,MAAM,mBAAmB,CAAC;AAClE,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,kBAAkB,CAAC;AAE9C,eAAO,MAAM,QAAQ,EAAE,eAAuC,CAAC;AAE/D,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,WAAW,gBAAgB;IAC/B,MAAM,EAAE,MAAM,CAAC;IACf,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,OAAO,CAAC;CAClB;AAOD;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAsB,OAAO,CAC3B,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,KAAK,EACZ,KAAK,EAAE,gBAAgB,GACtB,OAAO,CAAC,cAAc,CAAC,eAAe,CAAC,CAAC,CAiC1C"}

package/dist/commands/rollup-write.js

@@ -1,6 +1,7 @@
 import { existsSync } from 'node:fs';
 import { readFile } from 'node:fs/promises';
 import path from 'node:path';
+import { buildAgentsMissionSection } from '../core/agents-doc.js';
 import { NoteNotFoundError } from '../core/errors.js';
 import { ExitCode } from '../core/exit-codes.js';
 import { writeFileAtomic } from '../core/fs/atomic.js';
@@ -45,6 +46,13 @@ export async function execute(env, store, flags) {
         const note = await parseNote(absolutePath, relativePath);
         const frontmatter = { ...note.frontmatter, [ROLLED_UP_FIELD]: env.now().toISOString() };
         await writeFileAtomic(absolutePath, renderNoteText(frontmatter, note.body));
+        // inline-conventions-and-mission: a write to the configured mission path
+        // also refreshes AGENTS.md's inlined Mission section in this same
+        // operation, so the two never drift apart between this write and the
+        // store's next `ctxr update`.
+        if (relativePath === store.config.organize.mission_path) {
+            await buildAgentsMissionSection(store.root, store.config);
+        }
     }
     return {
         exitCode: ExitCode.Ok,

package/dist/commands/rollup-write.js.map

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package/dist/commands/serve.d.ts

@@ -0,0 +1,32 @@
+import type { CommandOutcome, CommandRequires } from '../core/command.js';
+import type { RunEnv } from '../core/env.js';
+import type { Store } from '../core/store.js';
+export declare const requires: CommandRequires;
+export interface ServeFlags {
+    port: number;
+    host: string;
+}
+export interface ServeData {
+    url: string;
+    port: number;
+    host: string;
+    root: string;
+}
+/**
+ * Defaults to loopback so an invocation with no `--host` keeps today's
+ * behavior exactly. `--host` exists for an operator who has deliberately
+ * decided to put something else (a reverse proxy, a tunnel sharing this
+ * process's network namespace) in front and knows what binding wider than
+ * loopback exposes — this command still applies no requester filtering of
+ * its own regardless of bind address; that judgment is entirely the
+ * caller's.
+ */
+export declare const DEFAULT_HOST = "127.0.0.1";
+/**
+ * cli-contract spec (local-browsing-surface D5): resolves the moment the
+ * listener is ready, so `runCommand()` emits exactly one envelope before
+ * any request is served — the listener itself keeps the process alive
+ * afterward, with no change to how `run()`/`bin.ts` end.
+ */
+export declare function execute(env: RunEnv, store: Store, flags: ServeFlags): Promise<CommandOutcome<ServeData>>;
+//# sourceMappingURL=serve.d.ts.map

package/dist/commands/serve.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/serve.js

@@ -0,0 +1,170 @@
+import { readFile } from 'node:fs/promises';
+import { createServer } from 'node:http';
+import path from 'node:path';
+import { buildLinkResolver } from '../core/browse/link-resolver.js';
+import { escapeHtml, renderNoteBody } from '../core/browse/render.js';
+import { buildRouteTable, publishSlugs } from '../core/browse/routes.js';
+import { readStylesheet, renderShell } from '../core/browse/templates.js';
+import { ExitCode } from '../core/exit-codes.js';
+export const requires = { store: 'required' };
+/**
+ * Defaults to loopback so an invocation with no `--host` keeps today's
+ * behavior exactly. `--host` exists for an operator who has deliberately
+ * decided to put something else (a reverse proxy, a tunnel sharing this
+ * process's network namespace) in front and knows what binding wider than
+ * loopback exposes — this command still applies no requester filtering of
+ * its own regardless of bind address; that judgment is entirely the
+ * caller's.
+ */
+export const DEFAULT_HOST = '127.0.0.1';
+const CONTENT_TYPES = {
+    '.html': 'text/html; charset=utf-8',
+    '.css': 'text/css; charset=utf-8',
+    '.js': 'text/javascript; charset=utf-8',
+    '.mjs': 'text/javascript; charset=utf-8',
+    '.json': 'application/json; charset=utf-8',
+    '.svg': 'image/svg+xml',
+    '.png': 'image/png',
+    '.jpg': 'image/jpeg',
+    '.jpeg': 'image/jpeg',
+    '.gif': 'image/gif',
+    '.webp': 'image/webp',
+    '.ico': 'image/x-icon',
+    '.txt': 'text/plain; charset=utf-8',
+    '.md': 'text/markdown; charset=utf-8',
+    '.woff': 'font/woff',
+    '.woff2': 'font/woff2',
+};
+function contentTypeFor(filePath) {
+    return CONTENT_TYPES[path.extname(filePath).toLowerCase()] ?? 'application/octet-stream';
+}
+/** Requirement: an unbuilt derived artifact reports how to build it, rather than an opaque 404. */
+function buildHint(command) {
+    return `<div class="ctxr-build-hint">Not built yet. Run <code>${escapeHtml(command)}</code> and reload.</div>`;
+}
+function renderIndex(table) {
+    const notes = [...table.notes.keys()].sort();
+    const catalogSections = [...table.catalog.keys()].sort();
+    const slugs = publishSlugs(table);
+    const listItems = (items, hrefFor) => items.length > 0
+        ? items.map((item) => `<li><a href="${hrefFor(item)}">${escapeHtml(item)}</a></li>`).join('\n')
+        : '<li>none yet</li>';
+    return [
+        '<h1>contexture</h1>',
+        `<p>${notes.length} note(s), ${catalogSections.length} catalog section(s), ${slugs.length} published page(s).</p>`,
+        '<h2>Notes</h2>',
+        `<ul class="ctxr-index">${listItems(notes, (p) => `/notes/${encodeURI(p)}`)}</ul>`,
+        '<h2>Catalog</h2>',
+        `<ul class="ctxr-index">${listItems(catalogSections, (id) => `/catalog/${encodeURIComponent(id)}`)}</ul>`,
+        '<h2>Graph</h2>',
+        '<p><a href="/graph">graph document</a></p>',
+        '<h2>Published pages</h2>',
+        `<ul class="ctxr-index">${listItems(slugs, (slug) => `/publish/${encodeURIComponent(slug)}/index.html`)}</ul>`,
+    ].join('\n');
+}
+function send(res, method, status, contentType, body) {
+    const buffer = Buffer.isBuffer(body) ? body : Buffer.from(body, 'utf8');
+    res.writeHead(status, { 'Content-Type': contentType, 'Content-Length': buffer.length });
+    res.end(method === 'HEAD' ? undefined : buffer);
+}
+/** Reads a derived document, rendering `hint` instead of 404ing when it hasn't been built yet. */
+async function readDerivedDocument(absolutePath) {
+    try {
+        return { text: await readFile(absolutePath, 'utf8') };
+    }
+    catch (err) {
+        if (err.code === 'ENOENT')
+            return { hint: true };
+        throw err;
+    }
+}
+async function handleRequest(store, stderr, req, res) {
+    const method = req.method ?? 'GET';
+    const pathname = decodeURIComponent(new URL(req.url ?? '/', 'http://localhost').pathname);
+    stderr.write(`${method} ${pathname}\n`);
+    if (method !== 'GET' && method !== 'HEAD') {
+        send(res, method, 405, 'text/plain; charset=utf-8', 'method not allowed\n');
+        return;
+    }
+    const table = await buildRouteTable(store);
+    const resolveLink = buildLinkResolver([...table.notes.values()]);
+    if (pathname === '/') {
+        send(res, method, 200, 'text/html; charset=utf-8', await renderShell('contexture', renderIndex(table)));
+        return;
+    }
+    if (pathname === '/assets/style.css') {
+        send(res, method, 200, 'text/css; charset=utf-8', await readStylesheet());
+        return;
+    }
+    if (pathname === '/graph') {
+        const doc = await readDerivedDocument(table.graphDocumentPath);
+        const body = 'hint' in doc ? buildHint('ctxr graph build') : renderNoteBody(doc.text, resolveLink);
+        send(res, method, 200, 'text/html; charset=utf-8', await renderShell('graph', body));
+        return;
+    }
+    if (pathname.startsWith('/notes/')) {
+        const note = table.notes.get(pathname.slice('/notes/'.length));
+        if (!note) {
+            send(res, method, 404, 'text/plain; charset=utf-8', 'not found\n');
+            return;
+        }
+        send(res, method, 200, 'text/html; charset=utf-8', await renderShell(note.path, renderNoteBody(note.body, resolveLink)));
+        return;
+    }
+    if (pathname.startsWith('/catalog/')) {
+        const sectionId = pathname.slice('/catalog/'.length);
+        const section = table.catalog.get(sectionId);
+        if (!section) {
+            send(res, method, 404, 'text/plain; charset=utf-8', 'not found\n');
+            return;
+        }
+        const doc = await readDerivedDocument(section.absolutePath);
+        const body = 'hint' in doc ? buildHint('ctxr catalog build') : renderNoteBody(doc.text, resolveLink);
+        send(res, method, 200, 'text/html; charset=utf-8', await renderShell(sectionId, body));
+        return;
+    }
+    if (pathname.startsWith('/publish/')) {
+        const file = table.publishFiles.get(pathname.slice('/publish/'.length));
+        if (!file) {
+            send(res, method, 404, 'text/plain; charset=utf-8', 'not found\n');
+            return;
+        }
+        send(res, method, 200, contentTypeFor(file.absolutePath), await readFile(file.absolutePath));
+        return;
+    }
+    send(res, method, 404, 'text/plain; charset=utf-8', 'not found\n');
+}
+/**
+ * cli-contract spec (local-browsing-surface D5): resolves the moment the
+ * listener is ready, so `runCommand()` emits exactly one envelope before
+ * any request is served — the listener itself keeps the process alive
+ * afterward, with no change to how `run()`/`bin.ts` end.
+ */
+export async function execute(env, store, flags) {
+    const server = createServer((req, res) => {
+        handleRequest(store, env.io.stderr, req, res).catch((err) => {
+            env.io.stderr.write(`serve: ${err instanceof Error ? err.message : String(err)}\n`);
+            if (!res.headersSent)
+                send(res, req.method ?? 'GET', 500, 'text/plain; charset=utf-8', 'internal error\n');
+            else
+                res.end();
+        });
+    });
+    const host = flags.host;
+    await new Promise((resolve, reject) => {
+        server.once('error', reject);
+        server.listen(flags.port, host, resolve);
+    });
+    const address = server.address();
+    const port = typeof address === 'object' && address !== null ? address.port : flags.port;
+    const url = `http://${host}:${port}/`;
+    return {
+        exitCode: ExitCode.Ok,
+        data: { url, port, host, root: store.root },
+        findings: [],
+        humanSummary: `serving ${store.root} at ${url}`,
+        storeRoot: store.root,
+        schemaVersion: store.config.schema_version,
+    };
+}
+//# sourceMappingURL=serve.js.map

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package/dist/commands/update.js

@@ -10,13 +10,13 @@ export const requires = { store: 'required' };
  * touched. Idempotent: a current store reports nothing changed.
  */
 export async function execute(env, store) {
-    const { changed } = await reconcileStore(env, store.root, store.config);
-    const adapterFiles = await generateAdapterOutputs(store);
+    const { changed, findings } = await reconcileStore(env, store.root, store.config);
+    const adapterFiles = await generateAdapterOutputs(env.git, store);
     const all = [...new Set([...changed, ...adapterFiles.filter((f) => f.changed).map((f) => f.path)])];
     return {
         exitCode: ExitCode.Ok,
         data: { changed: all },
-        findings: [],
+        findings,
         humanSummary: all.length === 0 ? 'Store is already up to date.' : `Updated ${all.length} contexture-owned file(s).`,
         storeRoot: store.root,
         schemaVersion: store.config.schema_version,

package/dist/commands/update.js.map

@@ -1 +1 @@
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+{"version":3,"file":"update.js","sourceRoot":"","sources":["../../src/commands/update.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AACjD,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AAEtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,wBAAwB,CAAC;AAEhE,MAAM,CAAC,MAAM,QAAQ,GAAoB,EAAE,KAAK,EAAE,UAAU,EAAE,CAAC;AAO/D;;;;;;GAMG;AACH,MAAM,CAAC,KAAK,UAAU,OAAO,CAAC,GAAW,EAAE,KAAY;IACrD,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,MAAM,cAAc,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC;IAClF,MAAM,YAAY,GAAG,MAAM,sBAAsB,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC;IAClE,MAAM,GAAG,GAAG,CAAC,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,OAAO,EAAE,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;IAEpG,OAAO;QACL,QAAQ,EAAE,QAAQ,CAAC,EAAE;QACrB,IAAI,EAAE,EAAE,OAAO,EAAE,GAAG,EAAE;QACtB,QAAQ;QACR,YAAY,EAAE,GAAG,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,8BAA8B,CAAC,CAAC,CAAC,WAAW,GAAG,CAAC,MAAM,4BAA4B;QACnH,SAAS,EAAE,KAAK,CAAC,IAAI;QACrB,aAAa,EAAE,KAAK,CAAC,MAAM,CAAC,cAAc;KAC3C,CAAC;AACJ,CAAC"}

package/dist/commands/verify.d.ts

@@ -16,8 +16,15 @@ export interface VerifyData {
  * harness-portability spec: exercises core store operations "from an
  * environment with no harness-specific state present" — nothing here reads
  * any harness-specific file or env var, so the property under test holds
- * by construction; this command just runs the three named operations in
- * order and stops at the first failure, naming it (never running the rest).
+ * by construction; this command runs each named operation in order and
+ * stops at the first failure, naming it (never running the rest).
+ *
+ * inline-conventions-and-mission: the old "every skill has an index entry"
+ * check is gone along with the index itself. Portability is now verified by
+ * confirming every managed AGENTS.md section is present, that its inlined
+ * conventions/mission content matches the source files on disk (the same
+ * drift `ctxr doctor` checks — see `integrity-checks.ts`), and that a skill
+ * is reachable by path at the configured skills path.
  */
 export declare function execute(store: Store, _flags?: VerifyFlags): Promise<CommandOutcome<VerifyData>>;
 //# sourceMappingURL=verify.d.ts.map

package/dist/commands/verify.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"verify.d.ts","sourceRoot":"","sources":["../../src/commands/verify.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AAoB1E,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,kBAAkB,CAAC;AAE9C,eAAO,MAAM,QAAQ,EAAE,eAAuC,CAAC;AAE/D,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAED,MAAM,WAAW,gBAAgB;IAC/B,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IACxB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,UAAU;IACzB,KAAK,EAAE,gBAAgB,EAAE,CAAC;CAC3B;AAWD;;;;;;;;;;;;;GAaG;AACH,wBAAsB,OAAO,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,GAAE,WAAgB,GAAG,OAAO,CAAC,cAAc,CAAC,UAAU,CAAC,CAAC,CA8FzG"}

package/dist/commands/verify.js

@@ -1,23 +1,36 @@
 import { readFile } from 'node:fs/promises';
 import path from 'node:path';
-import { agentsMdPath } from '../core/agents-doc.js';
+import { AGENTS_MD_CANONICAL_FENCE, AGENTS_MD_CAPTURE_FENCE, AGENTS_MD_CONVENTIONS_FENCE, AGENTS_MD_LEG_ROUTING_FENCE, AGENTS_MD_PLACEMENT_FENCE, agentsMdPath, checkAgentsMdDrift, } from '../core/agents-doc.js';
 import { readCatalogSection } from '../core/catalog/build.js';
 import { catalogSectionsFor } from '../core/catalog/model.js';
 import { ExitCode } from '../core/exit-codes.js';
+import { readFencedRegionFromFile } from '../core/fs/fenced-region.js';
 import { buildGraphFromNotes, graphBuildOptions } from '../core/graph/model.js';
 import { writeGraph } from '../core/graph/persist.js';
 import { listNotes } from '../core/notes/list.js';
 import { scanSkills } from '../core/skills.js';
 export const requires = { store: 'required' };
-function skillIndexEntry(name, relativePath) {
-    return `[${name}](${relativePath})`;
-}
+/** Every section that renders unconditionally — Mission is checked separately since it's optional. */
+const ALWAYS_PRESENT_SECTIONS = [
+    { label: 'store fundamentals', fence: AGENTS_MD_CANONICAL_FENCE },
+    { label: 'retrieval routing', fence: AGENTS_MD_LEG_ROUTING_FENCE },
+    { label: 'capture', fence: AGENTS_MD_CAPTURE_FENCE },
+    { label: 'placement', fence: AGENTS_MD_PLACEMENT_FENCE },
+    { label: 'store conventions', fence: AGENTS_MD_CONVENTIONS_FENCE },
+];
 /**
  * harness-portability spec: exercises core store operations "from an
  * environment with no harness-specific state present" — nothing here reads
  * any harness-specific file or env var, so the property under test holds
- * by construction; this command just runs the three named operations in
- * order and stops at the first failure, naming it (never running the rest).
+ * by construction; this command runs each named operation in order and
+ * stops at the first failure, naming it (never running the rest).
+ *
+ * inline-conventions-and-mission: the old "every skill has an index entry"
+ * check is gone along with the index itself. Portability is now verified by
+ * confirming every managed AGENTS.md section is present, that its inlined
+ * conventions/mission content matches the source files on disk (the same
+ * drift `ctxr doctor` checks — see `integrity-checks.ts`), and that a skill
+ * is reachable by path at the configured skills path.
  */
 export async function execute(store, _flags = {}) {
     const steps = [];
@@ -51,33 +64,43 @@ export async function execute(store, _flags = {}) {
         });
         return finish(store, steps);
     }
-    // 3. Follow one skill via the AGENTS.md index: every canonical skill
-    // must have an index entry, and at least one must be readable.
-    let agentsMdContent;
-    try {
-        agentsMdContent = await readFile(agentsMdPath(store.root), 'utf8');
+    // 3. Every managed AGENTS.md section is present.
+    for (const { label, fence } of ALWAYS_PRESENT_SECTIONS) {
+        const region = await readFencedRegionFromFile(agentsMdPath(store.root), fence);
+        if (region.length === 0) {
+            steps.push({
+                operation: `AGENTS.md section: ${label}`,
+                status: 'fail',
+                detail: `The "${label}" section is missing from AGENTS.md — run \`ctxr update\`.`,
+            });
+            return finish(store, steps);
+        }
     }
-    catch (err) {
+    steps.push({ operation: 'AGENTS.md sections present', status: 'pass' });
+    // 4. Inlined conventions/mission content matches its source files.
+    const drift = await checkAgentsMdDrift(store.root, store.config);
+    if (drift.driftedConventions.length > 0) {
         steps.push({
-            operation: 'skill index (AGENTS.md)',
+            operation: 'inlined conventions match source',
             status: 'fail',
-            detail: err instanceof Error ? err.message : String(err),
+            detail: `AGENTS.md's "Store conventions" section no longer matches: ${drift.driftedConventions.join(', ')} — run \`ctxr update\`.`,
         });
         return finish(store, steps);
     }
-    // entry-doc-generation spec: the index must cover every skill actually on
-    // disk — shipped seeds and operator-added files alike.
-    const skills = await scanSkills(store.root, store.config);
-    for (const skill of skills) {
-        if (!agentsMdContent.includes(skillIndexEntry(skill.title, skill.path))) {
+    steps.push({ operation: 'inlined conventions match source', status: 'pass' });
+    if (store.config.organize.mission_path) {
+        if (drift.driftedMission) {
             steps.push({
-                operation: `skill index entry for "${skill.title}"`,
+                operation: 'inlined mission matches source',
                 status: 'fail',
-                detail: `AGENTS.md's skill index has no entry for "${skill.title}".`,
+                detail: `AGENTS.md's "Mission" section no longer matches "${drift.driftedMission}" — run \`ctxr update\`.`,
             });
             return finish(store, steps);
         }
+        steps.push({ operation: 'inlined mission matches source', status: 'pass' });
     }
+    // 6. Follow one skill by path at the configured skills path.
+    const skills = await scanSkills(store.root, store.config);
     const first = skills[0];
     if (!first) {
         steps.push({
@@ -89,11 +112,11 @@ export async function execute(store, _flags = {}) {
     }
     try {
         await readFile(path.join(store.root, first.path), 'utf8');
-        steps.push({ operation: `follow skill "${first.title}"`, status: 'pass' });
+        steps.push({ operation: `follow skill "${first.title}" by path`, status: 'pass' });
     }
     catch (err) {
         steps.push({
-            operation: `follow skill "${first.title}"`,
+            operation: `follow skill "${first.title}" by path`,
             status: 'fail',
             detail: err instanceof Error ? err.message : String(err),
         });

package/dist/commands/verify.js.map

@@ -1 +1 @@
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