ctxr-cli 0.4.0 → 0.5.0

package/dist/core/convention-doc.js

@@ -0,0 +1,110 @@
+import { mkdir, readFile } from 'node:fs/promises';
+import path from 'node:path';
+import { DEFAULT_BASELINE_CONVENTION_FILE_NAME, DEFAULT_CUSTOM_CONVENTION_FILE_NAME } from '../config/defaults.js';
+import { writeFileAtomic } from './fs/atomic.js';
+import { packagedTemplate, substituteBlock } from './templates.js';
+function conventionTemplate(name) {
+    return packagedTemplate('conventions', name);
+}
+function directoryDefaultsList(config) {
+    const entries = Object.entries(config.visibility.directory_defaults);
+    if (entries.length === 0) {
+        return ['- (none configured — every note without an explicit value resolves to the store default context)'];
+    }
+    return entries.map(([prefix, value]) => `- \`${prefix}\` → \`${value}\``);
+}
+function hardWallsList(config) {
+    const { hard_walls: hardWalls } = config.disclosure;
+    if (hardWalls.length === 0)
+        return ['- (none configured)'];
+    return hardWalls.map((wall) => {
+        const scope = wall.note_path_prefix ? `under \`${wall.note_path_prefix}\`` : '(every path)';
+        const audience = wall.audience === '*' ? 'every audience' : `\`${wall.audience}\``;
+        const except = wall.except && wall.except.length > 0 ? `, except ${wall.except.map((a) => `\`${a}\``).join(', ')}` : '';
+        return `- ${audience} ${scope} → **${wall.verdict.toUpperCase()}**${except}`;
+    });
+}
+function internalAudiencesList(config) {
+    const { internal_audiences: internalAudiences } = config.disclosure;
+    if (internalAudiences.length === 0)
+        return ['- (none configured — every audience is external)'];
+    return internalAudiences.map((name) => `- \`${name}\``);
+}
+function relationVocabularyLines(config) {
+    const { relations } = config.retrieval;
+    if (relations.length === 0) {
+        return ['This store declares no relation vocabulary (`retrieval.relations`) — every link is untyped.'];
+    }
+    const named = relations.map((name) => `**${name}**`).join(', ');
+    return [
+        `This store's configured relation vocabulary, in link-section order: ${named}. A link under one of these section headings in a note's body is typed accordingly; a link under any other heading is untyped.`,
+    ];
+}
+/**
+ * compose-store-guidance-documents: the shipped baseline convention,
+ * rendered from this store's own configuration — never a shipped profile's
+ * or one deployment's names. This is what `syncBaselineConvention` writes;
+ * it is never composed with anything else. `AGENTS.md`'s "Store
+ * conventions" section (inline-conventions-and-mission's
+ * `scanConventions`/`renderConventionsSection`) inlines it as one of
+ * however many convention files the guidance directory holds, exactly like
+ * any operator-authored one.
+ */
+export function renderBaselineConvention(config) {
+    let text = conventionTemplate('baseline-convention')
+        .replaceAll('__VISIBILITY_FIELD__', config.fields.visibility)
+        .replaceAll('__DEFAULT_CONTEXT__', config.visibility.default_context)
+        .replaceAll('__ARCHIVE_PATH__', config.organize.archive_path)
+        .replaceAll('__DEFAULT_BRANCH__', config.git.default_branch)
+        .replaceAll('__WORKTREES_PATH__', config.session.worktrees_path);
+    text = substituteBlock(text, '__DIRECTORY_DEFAULTS_TABLE__', directoryDefaultsList(config));
+    text = substituteBlock(text, '__HARD_WALLS_LIST__', hardWallsList(config));
+    text = substituteBlock(text, '__INTERNAL_AUDIENCES_LIST__', internalAudiencesList(config));
+    text = substituteBlock(text, '__RELATION_VOCABULARY__', relationVocabularyLines(config));
+    return `${text}\n`;
+}
+/**
+ * compose-store-guidance-documents: contexture-owned, the same way a
+ * shipped skill copy is (`syncShippedSkills` in skills.ts) — written by
+ * `ctxr init`, rewritten wholesale by `ctxr update` on drift, never
+ * hand-edited. A single file, so this is simpler than the skills sync (no
+ * directory scan, no orphan cleanup): read-compare-write, reporting whether
+ * it changed.
+ */
+export async function syncBaselineConvention(root, config) {
+    const target = path.join(root, config.harness.guidance_path, DEFAULT_BASELINE_CONVENTION_FILE_NAME);
+    const content = renderBaselineConvention(config);
+    let existing;
+    try {
+        existing = await readFile(target, 'utf8');
+    }
+    catch {
+        existing = undefined;
+    }
+    if (existing === content)
+        return { changed: false };
+    await mkdir(path.dirname(target), { recursive: true });
+    await writeFileAtomic(target, content);
+    return { changed: true };
+}
+/**
+ * The operator's own convention source, seeded once with heading prompts
+ * only — no content contexture would be guessing at — and never touched
+ * again once it exists (unlike the baseline file, this one is
+ * operator-owned).
+ */
+export async function seedCustomConventionFile(root, config) {
+    const target = path.join(root, config.harness.guidance_path, DEFAULT_CUSTOM_CONVENTION_FILE_NAME);
+    try {
+        await readFile(target, 'utf8');
+        return { created: false };
+    }
+    catch (err) {
+        if (err.code !== 'ENOENT')
+            throw err;
+    }
+    await mkdir(path.dirname(target), { recursive: true });
+    await writeFileAtomic(target, `${conventionTemplate('custom-convention-seed')}\n`);
+    return { created: true };
+}
+//# sourceMappingURL=convention-doc.js.map

package/dist/core/convention-doc.js.map

@@ -0,0 +1 @@
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package/dist/core/conventions.d.ts

@@ -1,21 +1,41 @@
 import type { StoreConfig } from '../config/schema.js';
 /**
- * harness-portability spec (entry-doc-generation): operator-authored
- * convention documents and (via scanProcedures in procedures.ts) procedure
- * files are indexed from what is actually on disk — adding a file is the
- * entire integration. Metadata extraction order: frontmatter title →
+ * harness-portability spec (entry-doc-generation, inline-conventions-and-mission):
+ * operator-authored convention documents and (via scanSkills in skills.ts)
+ * skill files are scanned from what is actually on disk — adding a file is
+ * the entire integration. Metadata extraction order: frontmatter title →
  * first `# ` heading → filename stem; description only from frontmatter.
+ * `body` is the frontmatter-stripped content, kept alongside the metadata so
+ * `inlineDocBody` never has to re-read or re-parse the source file.
  */
 export interface ScannedDoc {
     /** Path relative to the store root, forward-slash separated. */
     path: string;
     title: string;
     description: string | null;
+    /** Frontmatter stripped, otherwise verbatim. */
+    body: string;
 }
 /** The skill-layout filename: `<slug>/SKILL.md` — what harnesses with skill auto-discovery read. */
 export declare const SKILL_FILE_NAME = "SKILL.md";
 export declare function extractDocMetadata(raw: string, relativePath: string): ScannedDoc;
+/**
+ * inline-conventions-and-mission: renders a scanned doc's body for inlining
+ * into a generated `AGENTS.md` section — a leading `# <title>` heading
+ * dropped when it duplicates the section heading the caller already
+ * provides, every remaining ATX heading demoted by `headingOffset` levels
+ * (capped at H6), and any nested `contexture:<region>` fence marker line
+ * stripped (its body kept, only the marker comment removed) so a fence
+ * copied out of a source file — e.g. mission.md's own rollup fence — never
+ * leaves an orphaned marker inside AGENTS.md's fence.
+ */
+export declare function inlineDocBody(doc: ScannedDoc, headingOffset: number): string[];
 export declare function scanDocsDir(root: string, dirRelativePath: string): Promise<ScannedDoc[]>;
-/** Every operator convention doc currently at the configured path. */
+/**
+ * Every convention doc currently at the configured guidance path —
+ * contexture's own shipped baseline (see `templates/conventions/baseline-convention.md`,
+ * synced by `syncBaselineConvention` in `convention-doc.ts`) alongside
+ * whatever the operator has added — minus the mission document.
+ */
 export declare function scanConventions(root: string, config: StoreConfig): Promise<ScannedDoc[]>;
 //# sourceMappingURL=conventions.d.ts.map

package/dist/core/conventions.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"conventions.d.ts","sourceRoot":"","sources":["../../src/core/conventions.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAIvD;;;;;;;;GAQG;AACH,MAAM,WAAW,UAAU;IACzB,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,gDAAgD;IAChD,IAAI,EAAE,MAAM,CAAC;CACd;AAID,oGAAoG;AACpG,eAAO,MAAM,eAAe,aAAa,CAAC;AAE1C,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,GAAG,UAAU,CA4BhF;AAID;;;;;;;;;GASG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,UAAU,EAAE,aAAa,EAAE,MAAM,GAAG,MAAM,EAAE,CAyB9E;AAED,wBAAsB,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC,CAgC9F;AAgBD;;;;;GAKG;AACH,wBAAsB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC,CAI9F"}

package/dist/core/conventions.js

@@ -1,5 +1,6 @@
 import { readdir, readFile } from 'node:fs/promises';
 import path from 'node:path';
+import { GENERIC_END_RE, GENERIC_START_RE } from './fs/fenced-region.js';
 import { parseNoteText } from './notes/parse.js';
 const HEADING_RE = /^#\s+(.+)$/m;
 /** The skill-layout filename: `<slug>/SKILL.md` — what harnesses with skill auto-discovery read. */
@@ -27,8 +28,48 @@ export function extractDocMetadata(raw, relativePath) {
             (heading && heading.length > 0 ? heading : undefined) ??
             fallback,
         description: typeof fmDescription === 'string' && fmDescription.length > 0 ? fmDescription : null,
+        body,
     };
 }
+const ATX_HEADING_RE = /^(#{1,6})(\s+.*)$/;
+/**
+ * inline-conventions-and-mission: renders a scanned doc's body for inlining
+ * into a generated `AGENTS.md` section — a leading `# <title>` heading
+ * dropped when it duplicates the section heading the caller already
+ * provides, every remaining ATX heading demoted by `headingOffset` levels
+ * (capped at H6), and any nested `contexture:<region>` fence marker line
+ * stripped (its body kept, only the marker comment removed) so a fence
+ * copied out of a source file — e.g. mission.md's own rollup fence — never
+ * leaves an orphaned marker inside AGENTS.md's fence.
+ */
+export function inlineDocBody(doc, headingOffset) {
+    const lines = doc.body.split('\n');
+    let start = 0;
+    while (start < lines.length && lines[start].trim() === '')
+        start += 1;
+    const firstHeading = start < lines.length ? ATX_HEADING_RE.exec(lines[start]) : null;
+    if (firstHeading && firstHeading[1].length === 1 && firstHeading[2].trim().toLowerCase() === doc.title.trim().toLowerCase()) {
+        start += 1;
+        while (start < lines.length && lines[start].trim() === '')
+            start += 1;
+    }
+    const out = [];
+    for (const line of lines.slice(start)) {
+        if (GENERIC_START_RE.test(line) || GENERIC_END_RE.test(line))
+            continue;
+        const heading = ATX_HEADING_RE.exec(line);
+        if (heading) {
+            const level = Math.min(heading[1].length + headingOffset, 6);
+            out.push(`${'#'.repeat(level)}${heading[2]}`);
+        }
+        else {
+            out.push(line);
+        }
+    }
+    while (out.length > 0 && out[out.length - 1].trim() === '')
+        out.pop();
+    return out;
+}
 export async function scanDocsDir(root, dirRelativePath) {
     const dir = path.join(root, dirRelativePath);
     let entries;
@@ -66,8 +107,29 @@ export async function scanDocsDir(root, dirRelativePath) {
     }
     return docs;
 }
-/** Every operator convention doc currently at the configured path. */
-export function scanConventions(root, config) {
-    return scanDocsDir(root, config.harness.conventions_path);
+/**
+ * compose-store-guidance-documents: the mission document, when configured,
+ * commonly lives in the same guidance directory as convention files (its
+ * shipped default is `<guidance_path>/mission.md`) but is never itself a
+ * convention — it already gets its own "Mission" section
+ * (inline-conventions-and-mission's `renderMissionSection`). Excluded by
+ * basename so inlining conventions never double-renders it.
+ */
+function reservedGuidanceFileNames(config) {
+    const names = new Set();
+    if (config.organize.mission_path)
+        names.add(path.basename(config.organize.mission_path));
+    return names;
+}
+/**
+ * Every convention doc currently at the configured guidance path —
+ * contexture's own shipped baseline (see `templates/conventions/baseline-convention.md`,
+ * synced by `syncBaselineConvention` in `convention-doc.ts`) alongside
+ * whatever the operator has added — minus the mission document.
+ */
+export async function scanConventions(root, config) {
+    const docs = await scanDocsDir(root, config.harness.guidance_path);
+    const reserved = reservedGuidanceFileNames(config);
+    return docs.filter((doc) => !reserved.has(path.basename(doc.path)));
 }
 //# sourceMappingURL=conventions.js.map

package/dist/core/conventions.js.map

@@ -1 +1 @@
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package/dist/core/errors.d.ts.map

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package/dist/core/errors.js

@@ -139,7 +139,8 @@ export class SessionLandOnDefaultBranchError extends ContextureError {
         super(ExitCode.Usage, {
             code: 'session.land.default_branch',
             severity: 'error',
-            message: `"${branch}" is the store's default branch; "ctxr session land" refuses to land it.`,
+            message: `"${branch}" is the store's default branch; "ctxr session land" refuses to land it. ` +
+                'Name the session with --branch <name>, or the pull request with --pr <number>.',
             subject: branch,
         });
     }

package/dist/core/errors.js.map

@@ -1 +1 @@
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package/dist/core/fs/fenced-region.d.ts

@@ -63,6 +63,44 @@ export declare function removeFencedRegion(text: string, fence: Fence): UpsertFe
 export declare function removeFencedRegionFromFile(filePath: string, fence: Fence): Promise<{
     changed: boolean;
 }>;
+export interface FenceSpan {
+    fence: Fence;
+    startIdx: number;
+    endIdx: number;
+}
+export interface ReorderFencedRegionsResult {
+    text: string;
+    changed: boolean;
+    /** True when the fences present are not all separated by blank lines only — no change was made. */
+    blocked: boolean;
+}
+/**
+ * inline-conventions-and-mission (design.md "Reordering is opt-in-safe"):
+ * moves every fence from `orderedFences` that is present in `text` to match
+ * that order, but ONLY when every present fence is separated from its
+ * neighbor (in the file's current order) by nothing but blank lines — the
+ * conservative reading of "never silently relocate hand-written content
+ * relative to sections it was written to sit near." Each fence's own body is
+ * moved byte-for-byte; content before the first present fence and after the
+ * last is untouched. A fence from `orderedFences` absent from `text` is
+ * skipped, not an error. Fewer than two fences present is a no-op (nothing
+ * to reorder), and matching order already is `changed: false`.
+ */
+export declare function reorderFencedRegions(text: string, orderedFences: readonly Fence[]): ReorderFencedRegionsResult;
+/** File-backed counterpart to `reorderFencedRegions` — a missing file has nothing to reorder. */
+export declare function reorderFencedRegionsInFile(filePath: string, orderedFences: readonly Fence[]): Promise<{
+    changed: boolean;
+    blocked: boolean;
+}>;
+/**
+ * Comment-syntax-agnostic fence-marker detection, shared with `inlineDocBody`
+ * (`conventions.ts`) so a nested `contexture:<region>` fence copied out of a
+ * source file (e.g. a rollup fence inside a mission document) is stripped by
+ * the exact same rule `validateFenceIntegrity` uses to find one, rather than
+ * a second regex that could quietly drift from it.
+ */
+export declare const GENERIC_START_RE: RegExp;
+export declare const GENERIC_END_RE: RegExp;
 /**
  * Pure validation, comment-syntax-agnostic (matches the `contexture:<region>`
  * token regardless of whether it's wrapped in `#`, `<!-- -->`, or anything

package/dist/core/fs/fenced-region.d.ts.map

@@ -1 +1 @@
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package/dist/core/fs/fenced-region.js

@@ -184,8 +184,94 @@ export async function removeFencedRegionFromFile(filePath, fence) {
     }
     return { changed: result.changed };
 }
-const GENERIC_START_RE = />>>\s*contexture:(\S+)/;
-const GENERIC_END_RE = /<<<\s*contexture:(\S+)/;
+function locateFence(lines, fence) {
+    const startIndices = indicesOf(lines, fence.start);
+    const endIndices = indicesOf(lines, fence.end);
+    if (startIndices.length === 0 && endIndices.length === 0)
+        return null;
+    if (startIndices.length === 1 && endIndices.length === 1 && startIndices[0] < endIndices[0]) {
+        return { fence, startIdx: startIndices[0], endIdx: endIndices[0] };
+    }
+    throw new FenceMismatch(`found ${startIndices.length} start marker(s) and ${endIndices.length} end marker(s) while reordering`);
+}
+/**
+ * inline-conventions-and-mission (design.md "Reordering is opt-in-safe"):
+ * moves every fence from `orderedFences` that is present in `text` to match
+ * that order, but ONLY when every present fence is separated from its
+ * neighbor (in the file's current order) by nothing but blank lines — the
+ * conservative reading of "never silently relocate hand-written content
+ * relative to sections it was written to sit near." Each fence's own body is
+ * moved byte-for-byte; content before the first present fence and after the
+ * last is untouched. A fence from `orderedFences` absent from `text` is
+ * skipped, not an error. Fewer than two fences present is a no-op (nothing
+ * to reorder), and matching order already is `changed: false`.
+ */
+export function reorderFencedRegions(text, orderedFences) {
+    const trailingNewline = text.endsWith('\n');
+    const lines = text.length === 0 ? [] : text.split('\n');
+    if (trailingNewline)
+        lines.pop();
+    const desiredOrder = [];
+    for (const fence of orderedFences) {
+        const span = locateFence(lines, fence);
+        if (span)
+            desiredOrder.push(span);
+    }
+    if (desiredOrder.length < 2) {
+        return { text, changed: false, blocked: false };
+    }
+    const byFileOrder = [...desiredOrder].sort((a, b) => a.startIdx - b.startIdx);
+    for (let i = 0; i < byFileOrder.length - 1; i += 1) {
+        const gapStart = byFileOrder[i].endIdx + 1;
+        const gapEnd = byFileOrder[i + 1].startIdx;
+        for (let j = gapStart; j < gapEnd; j += 1) {
+            if (lines[j] !== '') {
+                return { text, changed: false, blocked: true };
+            }
+        }
+    }
+    const alreadyInOrder = byFileOrder.every((span, i) => span.fence === desiredOrder[i].fence);
+    if (alreadyInOrder) {
+        return { text, changed: false, blocked: false };
+    }
+    const before = lines.slice(0, byFileOrder[0].startIdx);
+    const after = lines.slice(byFileOrder[byFileOrder.length - 1].endIdx + 1);
+    const rebuilt = [...before];
+    for (const [i, span] of desiredOrder.entries()) {
+        if (i > 0)
+            rebuilt.push('');
+        rebuilt.push(...lines.slice(span.startIdx, span.endIdx + 1));
+    }
+    rebuilt.push(...after);
+    const result = finish(rebuilt, text);
+    return { ...result, blocked: false };
+}
+/** File-backed counterpart to `reorderFencedRegions` — a missing file has nothing to reorder. */
+export async function reorderFencedRegionsInFile(filePath, orderedFences) {
+    let existing = '';
+    try {
+        existing = await readFile(filePath, 'utf8');
+    }
+    catch (err) {
+        if (err.code !== 'ENOENT')
+            throw err;
+        return { changed: false, blocked: false };
+    }
+    const result = reorderFencedRegions(existing, orderedFences);
+    if (result.changed) {
+        await writeFileAtomic(filePath, result.text);
+    }
+    return { changed: result.changed, blocked: result.blocked };
+}
+/**
+ * Comment-syntax-agnostic fence-marker detection, shared with `inlineDocBody`
+ * (`conventions.ts`) so a nested `contexture:<region>` fence copied out of a
+ * source file (e.g. a rollup fence inside a mission document) is stripped by
+ * the exact same rule `validateFenceIntegrity` uses to find one, rather than
+ * a second regex that could quietly drift from it.
+ */
+export const GENERIC_START_RE = />>>\s*contexture:(\S+)/;
+export const GENERIC_END_RE = /<<<\s*contexture:(\S+)/;
 /**
  * Pure validation, comment-syntax-agnostic (matches the `contexture:<region>`
  * token regardless of whether it's wrapped in `#`, `<!-- -->`, or anything

package/dist/core/fs/fenced-region.js.map

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package/dist/core/git/repo.d.ts

@@ -31,6 +31,16 @@ export type ToplevelStatus = {
 export declare function findToplevel(git: GitRunner, cwd: string): Promise<ToplevelStatus>;
 /** context-store spec: every non-init command refuses to operate on a root not inside a git repo. */
 export declare function isInsideGitRepo(git: GitRunner, cwd: string): Promise<boolean>;
+/**
+ * Whether `root` is itself a linked worktree's checkout, as opposed to a
+ * repository's main working tree (or no git checkout at all) — detected the
+ * same way git itself distinguishes them, without a subprocess: in the main
+ * working tree `.git` is a directory; in a linked worktree it is a text file
+ * whose content starts with `gitdir: `. Synchronous and fs-only (no
+ * `GitRunner`) because write-lifecycle/path-gate.ts's `isWriteInScope` calls
+ * this on every gated tool call and has no git runner of its own to spare.
+ */
+export declare function isLinkedWorktreeRoot(root: string): boolean;
 /**
  * Whether git has an explicit author identity available, from either source
  * it actually uses at commit time: `GIT_AUTHOR_*`/`GIT_COMMITTER_*`

package/dist/core/git/repo.d.ts.map

@@ -1 +1 @@
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package/dist/core/git/repo.js

@@ -1,3 +1,4 @@
+import { readFileSync, statSync } from 'node:fs';
 import path from 'node:path';
 /** Distinguishes "root is already a repo", "root is inside another repo", and "no repo at all". */
 export async function findToplevel(git, cwd) {
@@ -15,6 +16,33 @@ export async function isInsideGitRepo(git, cwd) {
     const result = await git.run(['rev-parse', '--is-inside-work-tree'], { cwd, allowFailure: true });
     return result.exitCode === 0 && result.stdout.trim() === 'true';
 }
+/**
+ * Whether `root` is itself a linked worktree's checkout, as opposed to a
+ * repository's main working tree (or no git checkout at all) — detected the
+ * same way git itself distinguishes them, without a subprocess: in the main
+ * working tree `.git` is a directory; in a linked worktree it is a text file
+ * whose content starts with `gitdir: `. Synchronous and fs-only (no
+ * `GitRunner`) because write-lifecycle/path-gate.ts's `isWriteInScope` calls
+ * this on every gated tool call and has no git runner of its own to spare.
+ */
+export function isLinkedWorktreeRoot(root) {
+    const gitPath = path.join(root, '.git');
+    let stat;
+    try {
+        stat = statSync(gitPath);
+    }
+    catch {
+        return false;
+    }
+    if (!stat.isFile())
+        return false;
+    try {
+        return readFileSync(gitPath, 'utf8').trimStart().startsWith('gitdir:');
+    }
+    catch {
+        return false;
+    }
+}
 /**
  * Whether git has an explicit author identity available, from either source
  * it actually uses at commit time: `GIT_AUTHOR_*`/`GIT_COMMITTER_*`