ctxr-cli 0.4.0 → 0.5.0

package/dist/core/agents-doc.js.map

@@ -1 +1 @@
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package/dist/core/checks/harness-portability-checks.d.ts

@@ -0,0 +1,12 @@
+/**
+ * compose-store-guidance-documents design.md D6: inlining every convention
+ * file's full body into AGENTS.md's "Store conventions" section
+ * (inline-conventions-and-mission) removed the natural size bound an index
+ * provided — an unbounded custom part could make AGENTS.md unwieldy. A
+ * configured ceiling (`harness.convention_max_bytes`, defaulting to
+ * `DEFAULT_CONVENTION_MAX_BYTES`) fails doctor loud rather than silently
+ * truncating content the inlining exists to surface.
+ */
+export declare const conventionsSectionSizeCheck: import("./types.js").CheckDefinition;
+export declare const HARNESS_PORTABILITY_CHECKS: import("./types.js").CheckDefinition[];
+//# sourceMappingURL=harness-portability-checks.d.ts.map

package/dist/core/checks/harness-portability-checks.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"harness-portability-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/harness-portability-checks.ts"],"names":[],"mappings":"AAMA;;;;;;;;GAQG;AACH,eAAO,MAAM,2BAA2B,sCAuBtC,CAAC;AAEH,eAAO,MAAM,0BAA0B,wCAAgC,CAAC"}

package/dist/core/checks/harness-portability-checks.js

@@ -0,0 +1,39 @@
+import { DEFAULT_CONVENTION_MAX_BYTES } from '../../config/defaults.js';
+import { AGENTS_MD_CONVENTIONS_FENCE, agentsMdPath } from '../agents-doc.js';
+import { readFencedRegionFromFile } from '../fs/fenced-region.js';
+import { defineCheck } from './types.js';
+/**
+ * compose-store-guidance-documents design.md D6: inlining every convention
+ * file's full body into AGENTS.md's "Store conventions" section
+ * (inline-conventions-and-mission) removed the natural size bound an index
+ * provided — an unbounded custom part could make AGENTS.md unwieldy. A
+ * configured ceiling (`harness.convention_max_bytes`, defaulting to
+ * `DEFAULT_CONVENTION_MAX_BYTES`) fails doctor loud rather than silently
+ * truncating content the inlining exists to surface.
+ */
+export const conventionsSectionSizeCheck = defineCheck({
+    id: 'harness_portability.conventions_section_size',
+    title: "AGENTS.md's inlined \"Store conventions\" section stays within its configured size budget",
+    severity: 'invariant',
+    capability: 'harness-portability',
+    scopes: ['store'],
+    async run(ctx) {
+        const region = await readFencedRegionFromFile(agentsMdPath(ctx.storeRoot), AGENTS_MD_CONVENTIONS_FENCE);
+        if (region.length === 0) {
+            return { status: 'skip', skipReason: 'AGENTS.md has not been generated yet — run `ctxr update`', findings: [] };
+        }
+        const size = Buffer.byteLength(region.join('\n'), 'utf8');
+        const budget = ctx.config.harness.convention_max_bytes ?? DEFAULT_CONVENTION_MAX_BYTES;
+        if (size <= budget)
+            return { status: 'pass', findings: [] };
+        const finding = {
+            code: 'harness_portability.conventions_section_size_exceeded',
+            severity: 'error',
+            message: `AGENTS.md's "Store conventions" section is ${size} bytes, exceeding the configured budget of ${budget}. Trim a convention file's content or raise \`harness.convention_max_bytes\`.`,
+            details: { size, budget },
+        };
+        return { status: 'fail', findings: [finding] };
+    },
+});
+export const HARNESS_PORTABILITY_CHECKS = [conventionsSectionSizeCheck];
+//# sourceMappingURL=harness-portability-checks.js.map

package/dist/core/checks/harness-portability-checks.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"harness-portability-checks.js","sourceRoot":"","sources":["../../../src/core/checks/harness-portability-checks.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,4BAA4B,EAAE,MAAM,0BAA0B,CAAC;AACxE,OAAO,EAAE,2BAA2B,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AAE7E,OAAO,EAAE,wBAAwB,EAAE,MAAM,wBAAwB,CAAC;AAClE,OAAO,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAEzC;;;;;;;;GAQG;AACH,MAAM,CAAC,MAAM,2BAA2B,GAAG,WAAW,CAAC;IACrD,EAAE,EAAE,8CAA8C;IAClD,KAAK,EAAE,2FAA2F;IAClG,QAAQ,EAAE,WAAW;IACrB,UAAU,EAAE,qBAAqB;IACjC,MAAM,EAAE,CAAC,OAAO,CAAC;IACjB,KAAK,CAAC,GAAG,CAAC,GAAG;QACX,MAAM,MAAM,GAAG,MAAM,wBAAwB,CAAC,YAAY,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,2BAA2B,CAAC,CAAC;QACxG,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACxB,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,0DAA0D,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC;QAClH,CAAC;QACD,MAAM,IAAI,GAAG,MAAM,CAAC,UAAU,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,MAAM,CAAC,CAAC;QAC1D,MAAM,MAAM,GAAG,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,oBAAoB,IAAI,4BAA4B,CAAC;QACvF,IAAI,IAAI,IAAI,MAAM;YAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC;QAE5D,MAAM,OAAO,GAAY;YACvB,IAAI,EAAE,uDAAuD;YAC7D,QAAQ,EAAE,OAAO;YACjB,OAAO,EAAE,8CAA8C,IAAI,8CAA8C,MAAM,+EAA+E;YAC9L,OAAO,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;SAC1B,CAAC;QACF,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,CAAC,OAAO,CAAC,EAAE,CAAC;IACjD,CAAC;CACF,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,0BAA0B,GAAG,CAAC,2BAA2B,CAAC,CAAC"}

package/dist/core/checks/integrity-checks.d.ts

@@ -29,11 +29,35 @@ export declare const adapterCompatibilityCheck: import("./types.js").CheckDefini
  * copy-pasted into the entry file outside its managed fence — the way an
  * operator reaching for "where do I put a Claude-only note" might otherwise
  * duplicate a whole AGENTS.md section into CLAUDE.md instead of writing a
- * harness-specific extra beneath the import (see the `store-conventions`
+ * harness-specific extra beneath the import (see the `conventions`
  * fence's own guidance in `agents-doc.ts`).
  */
 export declare const harnessEntryNoDuplicateConventionTextCheck: import("./types.js").CheckDefinition;
 /** store-integrity spec: "no unrecognized top-level config keys." */
 export declare const noUnrecognizedConfigKeysCheck: import("./types.js").CheckDefinition;
+/**
+ * harness-portability spec (inline-conventions-and-mission): "The entry
+ * document's inlined content matches its sources" — `AGENTS.md`'s inlined
+ * conventions/mission sections are derived content (rendered from
+ * `.contexture/conventions/*.md` and the configured mission path), so
+ * editing a source directly without regenerating `AGENTS.md` (e.g. bypassing
+ * `ctxr update`) leaves it silently stale. Reuses `checkAgentsMdDrift`, the
+ * same re-render-and-diff `ctxr verify --portable` uses, so the two commands
+ * can never disagree about whether a store is in sync.
+ */
+export declare const agentsMdInlinedContentCurrentCheck: import("./types.js").CheckDefinition;
+/**
+ * write-lifecycle spec / harness-portability spec (inline-conventions-and-mission):
+ * "A commit that would leave the entry document stale is refused." The
+ * store-scope drift check above reads the working tree, which is the wrong
+ * source of truth for a pre-commit hook — an operator can edit a convention
+ * file, forget to run `ctxr update`, and `git add` only the convention file;
+ * the working tree would then have a regenerated AGENTS.md sitting right
+ * next to it only if they happened to run `ctxr update` first, which is
+ * exactly the step this check exists to enforce. So this reads STAGED
+ * content for any file this commit touches (falling back to disk for files
+ * the commit doesn't touch) and re-renders against that view instead.
+ */
+export declare const stagedAgentsMdInlinedContentCurrentCheck: import("./types.js").CheckDefinition;
 export declare const INTEGRITY_CHECKS: import("./types.js").CheckDefinition[];
 //# sourceMappingURL=integrity-checks.d.ts.map

package/dist/core/checks/integrity-checks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"integrity-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/integrity-checks.ts"],"names":[],"mappings":"AAwBA;;;;;;;GAOG;AACH,eAAO,MAAM,6BAA6B,sCAkCxC,CAAC;AAEH;;;;;;GAMG;AAGH,eAAO,MAAM,uBAAuB,sCAoBlC,CAAC;AAEH,6EAA6E;AAC7E,eAAO,MAAM,0BAA0B,sCAsBrC,CAAC;AAEH,oEAAoE;AACpE,eAAO,MAAM,yBAAyB,sCAuBpC,CAAC;AAYH;;;;;;;;;;;;GAYG;AACH,eAAO,MAAM,0CAA0C,sCAgDrD,CAAC;AAEH,qEAAqE;AACrE,eAAO,MAAM,6BAA6B,sCAgBxC,CAAC;AAEH,eAAO,MAAM,gBAAgB,wCAO5B,CAAC"}
+{"version":3,"file":"integrity-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/integrity-checks.ts"],"names":[],"mappings":"AAiCA;;;;;;;GAOG;AACH,eAAO,MAAM,6BAA6B,sCAkCxC,CAAC;AAEH;;;;;;GAMG;AAGH,eAAO,MAAM,uBAAuB,sCAoBlC,CAAC;AAEH,6EAA6E;AAC7E,eAAO,MAAM,0BAA0B,sCAsBrC,CAAC;AAEH,oEAAoE;AACpE,eAAO,MAAM,yBAAyB,sCAuBpC,CAAC;AAYH;;;;;;;;;;;;GAYG;AACH,eAAO,MAAM,0CAA0C,sCAgDrD,CAAC;AAEH,qEAAqE;AACrE,eAAO,MAAM,6BAA6B,sCAgBxC,CAAC;AAEH;;;;;;;;;GASG;AACH,eAAO,MAAM,kCAAkC,sCA4B7C,CAAC;AAqBH;;;;;;;;;;;GAWG;AACH,eAAO,MAAM,wCAAwC,sCAiEnD,CAAC;AAEH,eAAO,MAAM,gBAAgB,wCAS5B,CAAC"}

package/dist/core/checks/integrity-checks.js

@@ -2,9 +2,10 @@ import { readFile } from 'node:fs/promises';
 import path from 'node:path';
 import { configuredAdapters, resolveAdapter } from '../../adapters/registry.js';
 import { StoreConfigSchema, SUPPORTED_SCHEMA_VERSION } from '../../config/schema.js';
-import { agentsMdPath } from '../agents-doc.js';
+import { AGENTS_MD_CONVENTIONS_FENCE, AGENTS_MD_MISSION_FENCE, agentsMdPath, checkAgentsMdDrift, renderConventionsSection, renderMissionSection, } from '../agents-doc.js';
 import { checkCatalogStale } from '../catalog/build.js';
-import { removeFencedRegion } from '../fs/fenced-region.js';
+import { extractDocMetadata, scanConventions } from '../conventions.js';
+import { readFencedRegion, removeFencedRegion } from '../fs/fenced-region.js';
 import { buildGraphFromNotes, graphBuildOptions } from '../graph/model.js';
 import { harnessEntryFence } from '../markers.js';
 import { defineCheck } from './types.js';
@@ -157,7 +158,7 @@ function headingsOf(text) {
  * copy-pasted into the entry file outside its managed fence — the way an
  * operator reaching for "where do I put a Claude-only note" might otherwise
  * duplicate a whole AGENTS.md section into CLAUDE.md instead of writing a
- * harness-specific extra beneath the import (see the `store-conventions`
+ * harness-specific extra beneath the import (see the `conventions`
  * fence's own guidance in `agents-doc.ts`).
  */
 export const harnessEntryNoDuplicateConventionTextCheck = defineCheck({
@@ -227,6 +228,136 @@ export const noUnrecognizedConfigKeysCheck = defineCheck({
         return { status: findings.length > 0 ? 'fail' : 'pass', findings };
     },
 });
+/**
+ * harness-portability spec (inline-conventions-and-mission): "The entry
+ * document's inlined content matches its sources" — `AGENTS.md`'s inlined
+ * conventions/mission sections are derived content (rendered from
+ * `.contexture/conventions/*.md` and the configured mission path), so
+ * editing a source directly without regenerating `AGENTS.md` (e.g. bypassing
+ * `ctxr update`) leaves it silently stale. Reuses `checkAgentsMdDrift`, the
+ * same re-render-and-diff `ctxr verify --portable` uses, so the two commands
+ * can never disagree about whether a store is in sync.
+ */
+export const agentsMdInlinedContentCurrentCheck = defineCheck({
+    id: 'harness_portability.agents_md_inlined_content_current',
+    title: "AGENTS.md's inlined conventions and mission content match their source files",
+    severity: 'invariant',
+    capability: 'harness-portability',
+    scopes: ['store'],
+    async run(ctx) {
+        const drift = await checkAgentsMdDrift(ctx.storeRoot, ctx.config);
+        const findings = [
+            ...drift.driftedConventions.map((conventionPath) => ({
+                code: 'harness_portability.agents_md_convention_drifted',
+                severity: 'error',
+                message: `AGENTS.md's "Store conventions" section no longer matches "${conventionPath}" — run \`ctxr update\`.`,
+                subject: conventionPath,
+            })),
+            ...(drift.driftedMission
+                ? [
+                    {
+                        code: 'harness_portability.agents_md_mission_drifted',
+                        severity: 'error',
+                        message: `AGENTS.md's "Mission" section no longer matches "${drift.driftedMission}" — run \`ctxr update\`.`,
+                        subject: drift.driftedMission,
+                    },
+                ]
+                : []),
+        ];
+        return { status: findings.length > 0 ? 'fail' : 'pass', findings };
+    },
+});
+/**
+ * A path's staged (index) content when it's part of this commit, else its
+ * current on-disk content — the pre-commit-hook analogue of
+ * `checkAgentsMdDrift`'s working-tree reads, so a staged-but-not-yet-merged
+ * edit to a source file is seen even though nothing has been committed yet.
+ * `null` means the path doesn't exist in either the staged set or on disk
+ * (deleted, or staged as a deletion).
+ */
+async function stagedOrDiskContent(storeRoot, staged, relativePath) {
+    const stagedFile = staged.find((f) => f.path === relativePath);
+    if (stagedFile)
+        return stagedFile.status === 'D' ? null : (stagedFile.content ?? null);
+    try {
+        return await readFile(path.join(storeRoot, relativePath), 'utf8');
+    }
+    catch (err) {
+        if (err.code === 'ENOENT')
+            return null;
+        throw err;
+    }
+}
+/**
+ * write-lifecycle spec / harness-portability spec (inline-conventions-and-mission):
+ * "A commit that would leave the entry document stale is refused." The
+ * store-scope drift check above reads the working tree, which is the wrong
+ * source of truth for a pre-commit hook — an operator can edit a convention
+ * file, forget to run `ctxr update`, and `git add` only the convention file;
+ * the working tree would then have a regenerated AGENTS.md sitting right
+ * next to it only if they happened to run `ctxr update` first, which is
+ * exactly the step this check exists to enforce. So this reads STAGED
+ * content for any file this commit touches (falling back to disk for files
+ * the commit doesn't touch) and re-renders against that view instead.
+ */
+export const stagedAgentsMdInlinedContentCurrentCheck = defineCheck({
+    id: 'staged.agents_md_inlined_content_current',
+    title: 'A staged convention or mission change also stages a matching AGENTS.md regeneration',
+    severity: 'invariant',
+    capability: 'harness-portability',
+    scopes: ['staged'],
+    async run(ctx) {
+        const staged = ctx.staged ?? [];
+        const conventionsPrefix = ctx.config.harness.guidance_path.endsWith('/')
+            ? ctx.config.harness.guidance_path
+            : `${ctx.config.harness.guidance_path}/`;
+        const missionPath = ctx.config.organize.mission_path;
+        const relevantSourceStaged = staged.some((f) => f.path.startsWith(conventionsPrefix) || f.path === missionPath);
+        if (!relevantSourceStaged)
+            return { status: 'pass', findings: [] };
+        const agentsMdStaged = staged.find((f) => f.path === 'AGENTS.md');
+        if (!agentsMdStaged || agentsMdStaged.content === undefined) {
+            return {
+                status: 'fail',
+                findings: [
+                    {
+                        code: 'staged.agents_md_inlined_content_current.not_staged',
+                        severity: 'error',
+                        message: 'This commit stages a change to an operator convention file or the mission document, but not AGENTS.md — run `ctxr update` and stage the result.',
+                    },
+                ],
+            };
+        }
+        const conventions = await scanConventions(ctx.storeRoot, ctx.config);
+        const effectiveConventions = await Promise.all(conventions.map(async (doc) => {
+            const raw = await stagedOrDiskContent(ctx.storeRoot, staged, doc.path);
+            return raw === null ? doc : extractDocMetadata(raw, doc.path);
+        }));
+        const freshConventions = renderConventionsSection(ctx.config, effectiveConventions).join('\n');
+        const stagedConventionsRegion = readFencedRegion(agentsMdStaged.content, AGENTS_MD_CONVENTIONS_FENCE).join('\n');
+        const findings = [];
+        if (freshConventions !== stagedConventionsRegion) {
+            findings.push({
+                code: 'staged.agents_md_inlined_content_current.conventions_mismatch',
+                severity: 'error',
+                message: 'The staged AGENTS.md does not reflect the staged convention file content — run `ctxr update` and re-stage AGENTS.md.',
+            });
+        }
+        if (missionPath) {
+            const missionRaw = await stagedOrDiskContent(ctx.storeRoot, staged, missionPath);
+            const freshMission = renderMissionSection(ctx.config, missionRaw).join('\n');
+            const stagedMissionRegion = readFencedRegion(agentsMdStaged.content, AGENTS_MD_MISSION_FENCE).join('\n');
+            if (freshMission !== stagedMissionRegion) {
+                findings.push({
+                    code: 'staged.agents_md_inlined_content_current.mission_mismatch',
+                    severity: 'error',
+                    message: 'The staged AGENTS.md does not reflect the staged mission document content — run `ctxr update` and re-stage AGENTS.md.',
+                });
+            }
+        }
+        return { status: findings.length > 0 ? 'fail' : 'pass', findings };
+    },
+});
 export const INTEGRITY_CHECKS = [
     derivedArtifactStalenessCheck,
     graphDanglingLinksCheck,
@@ -234,5 +365,7 @@ export const INTEGRITY_CHECKS = [
     adapterCompatibilityCheck,
     harnessEntryNoDuplicateConventionTextCheck,
     noUnrecognizedConfigKeysCheck,
+    agentsMdInlinedContentCurrentCheck,
+    stagedAgentsMdInlinedContentCurrentCheck,
 ];
 //# sourceMappingURL=integrity-checks.js.map

package/dist/core/checks/integrity-checks.js.map

@@ -1 +1 @@
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package/dist/core/checks/manifest.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAElD;;;GAGG;AACH,eAAO,MAAM,MAAM,EAAE,SAAS,eAAe,EAQ5C,CAAC"}
+{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAOA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAElD;;;GAGG;AACH,eAAO,MAAM,MAAM,EAAE,SAAS,eAAe,EAS5C,CAAC"}

package/dist/core/checks/manifest.js

@@ -1,5 +1,6 @@
 import { CATALOG_CHECKS } from './catalog-checks.js';
 import { DISCLOSURE_CHECKS } from './disclosure-checks.js';
+import { HARNESS_PORTABILITY_CHECKS } from './harness-portability-checks.js';
 import { INTEGRITY_CHECKS } from './integrity-checks.js';
 import { failClosedVisibilityCheck, failClosedVisibilityInvariantCheck } from '../notes/checks.js';
 import { ORGANIZE_CHECKS } from './organize-checks.js';
@@ -16,5 +17,6 @@ export const CHECKS = [
     ...ORGANIZE_CHECKS,
     ...DISCLOSURE_CHECKS,
     ...INTEGRITY_CHECKS,
+    ...HARNESS_PORTABILITY_CHECKS,
 ];
 //# sourceMappingURL=manifest.js.map

package/dist/core/checks/manifest.js.map

@@ -1 +1 @@
-{"version":3,"file":"manifest.js","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,yBAAyB,EAAE,kCAAkC,EAAE,MAAM,oBAAoB,CAAC;AACnG,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAC;AAGrE;;;GAGG;AACH,MAAM,CAAC,MAAM,MAAM,GAA+B;IAChD,yBAAyB;IACzB,kCAAkC;IAClC,GAAG,sBAAsB;IACzB,GAAG,cAAc;IACjB,GAAG,eAAe;IAClB,GAAG,iBAAiB;IACpB,GAAG,gBAAgB;CACpB,CAAC"}
+{"version":3,"file":"manifest.js","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EAAE,0BAA0B,EAAE,MAAM,iCAAiC,CAAC;AAC7E,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,yBAAyB,EAAE,kCAAkC,EAAE,MAAM,oBAAoB,CAAC;AACnG,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAC;AAGrE;;;GAGG;AACH,MAAM,CAAC,MAAM,MAAM,GAA+B;IAChD,yBAAyB;IACzB,kCAAkC;IAClC,GAAG,sBAAsB;IACzB,GAAG,cAAc;IACjB,GAAG,eAAe;IAClB,GAAG,iBAAiB;IACpB,GAAG,gBAAgB;IACnB,GAAG,0BAA0B;CAC9B,CAAC"}

package/dist/core/checks/organize-checks.d.ts

@@ -16,5 +16,17 @@ export declare const uningestedInboxCheck: import("./types.js").CheckDefinition;
 export declare const catalogGapsLintCheck: import("./types.js").CheckDefinition;
 /** context-organize spec (store-primitives-from-migration-audit D4): a rollup with no timestamp, or one whose backlinks have moved past it, reported not failed. */
 export declare const rollupStaleCheck: import("./types.js").CheckDefinition;
+/**
+ * harness-portability spec (inline-conventions-and-mission): "Generated
+ * sections render in a fixed order" — hand-written content interrupting the
+ * managed fences' contiguity blocks `ctxr update` from reordering them to
+ * the fixed layout (`reorderFencedRegions`' own conservative rule: never
+ * relocate content it can't be sure sits outside every managed section).
+ * Reported here as an observation, not by `doctor`: `doctor` runs only
+ * `severity: 'invariant'` checks (`src/commands/doctor.ts`), and a store
+ * whose sections are merely out of the preferred order still functions —
+ * this is exactly the report-don't-block condition lint exists for.
+ */
+export declare const agentsMdSectionOrderBlockedCheck: import("./types.js").CheckDefinition;
 export declare const ORGANIZE_CHECKS: import("./types.js").CheckDefinition[];
 //# sourceMappingURL=organize-checks.d.ts.map

package/dist/core/checks/organize-checks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"organize-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/organize-checks.ts"],"names":[],"mappings":"AASA,0FAA0F;AAC1F,eAAO,MAAM,gBAAgB,sCAiB3B,CAAC;AAEH,oVAAoV;AACpV,eAAO,MAAM,gBAAgB,sCAkB3B,CAAC;AAEH,mGAAmG;AACnG,eAAO,MAAM,oBAAoB,sCAqB/B,CAAC;AAEH;;;;;;;;GAQG;AACH,eAAO,MAAM,oBAAoB,sCAgB/B,CAAC;AAEH,oKAAoK;AACpK,eAAO,MAAM,gBAAgB,sCAqB3B,CAAC;AAEH,eAAO,MAAM,eAAe,wCAAqG,CAAC"}
+{"version":3,"file":"organize-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/organize-checks.ts"],"names":[],"mappings":"AAYA,0FAA0F;AAC1F,eAAO,MAAM,gBAAgB,sCAiB3B,CAAC;AAEH,oVAAoV;AACpV,eAAO,MAAM,gBAAgB,sCAkB3B,CAAC;AAEH,mGAAmG;AACnG,eAAO,MAAM,oBAAoB,sCAqB/B,CAAC;AAEH;;;;;;;;GAQG;AACH,eAAO,MAAM,oBAAoB,sCAgB/B,CAAC;AAEH,oKAAoK;AACpK,eAAO,MAAM,gBAAgB,sCAqB3B,CAAC;AAEH;;;;;;;;;;GAUG;AACH,eAAO,MAAM,gCAAgC,sCA2B3C,CAAC;AAEH,eAAO,MAAM,eAAe,wCAO3B,CAAC"}

package/dist/core/checks/organize-checks.js

@@ -1,4 +1,7 @@
+import { readFile } from 'node:fs/promises';
+import { AGENTS_MD_SECTION_ORDER, agentsMdPath } from '../agents-doc.js';
 import { checkCatalogCoverage } from '../catalog/build.js';
+import { reorderFencedRegions } from '../fs/fenced-region.js';
 import { orphans } from '../graph/query.js';
 import { hasSourceIdentity } from '../ingest/identity.js';
 import { findStaleRollups } from '../rollup.js';
@@ -116,5 +119,52 @@ export const rollupStaleCheck = defineCheck({
         return { status: findings.length > 0 ? 'fail' : 'pass', findings };
     },
 });
-export const ORGANIZE_CHECKS = [orphanNotesCheck, brokenLinksCheck, uningestedInboxCheck, catalogGapsLintCheck, rollupStaleCheck];
+/**
+ * harness-portability spec (inline-conventions-and-mission): "Generated
+ * sections render in a fixed order" — hand-written content interrupting the
+ * managed fences' contiguity blocks `ctxr update` from reordering them to
+ * the fixed layout (`reorderFencedRegions`' own conservative rule: never
+ * relocate content it can't be sure sits outside every managed section).
+ * Reported here as an observation, not by `doctor`: `doctor` runs only
+ * `severity: 'invariant'` checks (`src/commands/doctor.ts`), and a store
+ * whose sections are merely out of the preferred order still functions —
+ * this is exactly the report-don't-block condition lint exists for.
+ */
+export const agentsMdSectionOrderBlockedCheck = defineCheck({
+    id: 'harness_portability.agents_md_section_order_blocked',
+    title: "AGENTS.md's managed sections can be reordered to the standard layout",
+    severity: 'observation',
+    capability: 'harness-portability',
+    scopes: ['store'],
+    async run(ctx) {
+        let content;
+        try {
+            content = await readFile(agentsMdPath(ctx.storeRoot), 'utf8');
+        }
+        catch (err) {
+            if (err.code !== 'ENOENT')
+                throw err;
+            return { status: 'skip', skipReason: 'AGENTS.md has not been generated yet — run `ctxr update`', findings: [] };
+        }
+        const { blocked } = reorderFencedRegions(content, AGENTS_MD_SECTION_ORDER);
+        const findings = blocked
+            ? [
+                {
+                    code: 'harness_portability.agents_md_section_order_blocked',
+                    severity: 'info',
+                    message: 'AGENTS.md has hand-written content between two managed sections, so `ctxr update` cannot reorder them to the standard layout. Move the hand-written content outside every managed section, then re-run `ctxr update`.',
+                },
+            ]
+            : [];
+        return { status: findings.length > 0 ? 'fail' : 'pass', findings };
+    },
+});
+export const ORGANIZE_CHECKS = [
+    orphanNotesCheck,
+    brokenLinksCheck,
+    uningestedInboxCheck,
+    catalogGapsLintCheck,
+    rollupStaleCheck,
+    agentsMdSectionOrderBlockedCheck,
+];
 //# sourceMappingURL=organize-checks.js.map

package/dist/core/checks/organize-checks.js.map

@@ -1 +1 @@
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package/dist/core/convention-doc.d.ts

@@ -0,0 +1,33 @@
+import type { StoreConfig } from '../config/schema.js';
+/**
+ * compose-store-guidance-documents: the shipped baseline convention,
+ * rendered from this store's own configuration — never a shipped profile's
+ * or one deployment's names. This is what `syncBaselineConvention` writes;
+ * it is never composed with anything else. `AGENTS.md`'s "Store
+ * conventions" section (inline-conventions-and-mission's
+ * `scanConventions`/`renderConventionsSection`) inlines it as one of
+ * however many convention files the guidance directory holds, exactly like
+ * any operator-authored one.
+ */
+export declare function renderBaselineConvention(config: StoreConfig): string;
+/**
+ * compose-store-guidance-documents: contexture-owned, the same way a
+ * shipped skill copy is (`syncShippedSkills` in skills.ts) — written by
+ * `ctxr init`, rewritten wholesale by `ctxr update` on drift, never
+ * hand-edited. A single file, so this is simpler than the skills sync (no
+ * directory scan, no orphan cleanup): read-compare-write, reporting whether
+ * it changed.
+ */
+export declare function syncBaselineConvention(root: string, config: StoreConfig): Promise<{
+    changed: boolean;
+}>;
+/**
+ * The operator's own convention source, seeded once with heading prompts
+ * only — no content contexture would be guessing at — and never touched
+ * again once it exists (unlike the baseline file, this one is
+ * operator-owned).
+ */
+export declare function seedCustomConventionFile(root: string, config: StoreConfig): Promise<{
+    created: boolean;
+}>;
+//# sourceMappingURL=convention-doc.d.ts.map

package/dist/core/convention-doc.d.ts.map

@@ -0,0 +1 @@
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