ctxo-mcp 0.2.0

package/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2026 Alper Hankendi
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/dist/chunk-54ETLIQX.js

@@ -0,0 +1,145 @@
+#!/usr/bin/env node
+
+// src/adapters/storage/json-index-reader.ts
+import { readFileSync, readdirSync, existsSync, realpathSync } from "fs";
+import { join, relative } from "path";
+
+// src/core/types.ts
+import { z } from "zod";
+var SYMBOL_KINDS = [
+  "function",
+  "class",
+  "interface",
+  "method",
+  "variable",
+  "type"
+];
+var SymbolKindSchema = z.enum(SYMBOL_KINDS);
+var EDGE_KINDS = [
+  "imports",
+  "calls",
+  "extends",
+  "implements",
+  "uses"
+];
+var EdgeKindSchema = z.enum(EDGE_KINDS);
+var DetailLevelSchema = z.union([
+  z.literal(1),
+  z.literal(2),
+  z.literal(3),
+  z.literal(4)
+]);
+var SymbolIdSchema = z.string().min(1).refine(
+  (value) => {
+    const parts = value.split("::");
+    if (parts.length !== 3) return false;
+    const [file, name, kind] = parts;
+    if (!file || !name || !kind) return false;
+    return SymbolKindSchema.safeParse(kind).success;
+  },
+  { message: 'Symbol ID must match format "<file>::<name>::<kind>"' }
+);
+var SymbolNodeSchema = z.object({
+  symbolId: SymbolIdSchema,
+  name: z.string().min(1),
+  kind: SymbolKindSchema,
+  startLine: z.number().int().nonnegative(),
+  endLine: z.number().int().nonnegative()
+}).refine((node) => node.endLine >= node.startLine, {
+  message: "endLine must be >= startLine"
+});
+var GraphEdgeSchema = z.object({
+  from: SymbolIdSchema,
+  to: SymbolIdSchema,
+  kind: EdgeKindSchema
+});
+var CommitIntentSchema = z.object({
+  hash: z.string().min(1),
+  message: z.string(),
+  date: z.string().min(1),
+  kind: z.literal("commit")
+});
+var AntiPatternSchema = z.object({
+  hash: z.string().min(1),
+  message: z.string(),
+  date: z.string().min(1)
+});
+var ComplexityMetricsSchema = z.object({
+  symbolId: z.string().min(1),
+  cyclomatic: z.number().nonnegative()
+});
+var FileIndexSchema = z.object({
+  file: z.string().min(1),
+  lastModified: z.number().nonnegative(),
+  contentHash: z.string().optional(),
+  symbols: z.array(SymbolNodeSchema),
+  edges: z.array(GraphEdgeSchema),
+  complexity: z.array(ComplexityMetricsSchema).optional(),
+  intent: z.array(CommitIntentSchema),
+  antiPatterns: z.array(AntiPatternSchema)
+});
+
+// src/adapters/storage/json-index-reader.ts
+var JsonIndexReader = class {
+  indexDir;
+  constructor(ctxoRoot) {
+    this.indexDir = join(ctxoRoot, "index");
+  }
+  readAll() {
+    if (!existsSync(this.indexDir)) {
+      return [];
+    }
+    const jsonFiles = this.collectJsonFiles(this.indexDir);
+    const results = [];
+    for (const filePath of jsonFiles) {
+      const parsed = this.readSingle(filePath);
+      if (parsed) {
+        results.push(parsed);
+      }
+    }
+    return results;
+  }
+  readSingle(absolutePath) {
+    try {
+      const raw = readFileSync(absolutePath, "utf-8");
+      const data = JSON.parse(raw);
+      const result = FileIndexSchema.safeParse(data);
+      if (!result.success) {
+        const rel = relative(this.indexDir, absolutePath);
+        console.error(
+          `[ctxo:json-reader] Invalid schema in ${rel}: ${result.error.message}`
+        );
+        return void 0;
+      }
+      return result.data;
+    } catch (err) {
+      const rel = relative(this.indexDir, absolutePath);
+      console.error(
+        `[ctxo:json-reader] Failed to read ${rel}: ${err.message}`
+      );
+      return void 0;
+    }
+  }
+  collectJsonFiles(dir, visited = /* @__PURE__ */ new Set()) {
+    const realDir = realpathSync(dir);
+    if (visited.has(realDir)) return [];
+    visited.add(realDir);
+    const files = [];
+    for (const entry of readdirSync(dir, { withFileTypes: true })) {
+      if (entry.isSymbolicLink()) continue;
+      const fullPath = join(dir, entry.name);
+      if (entry.isDirectory()) {
+        files.push(...this.collectJsonFiles(fullPath, visited));
+      } else if (entry.name.endsWith(".json")) {
+        files.push(fullPath);
+      }
+    }
+    return files;
+  }
+};
+
+export {
+  DetailLevelSchema,
+  JsonIndexReader
+};
+//# sourceMappingURL=chunk-54ETLIQX.js.map

package/dist/chunk-54ETLIQX.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/adapters/storage/json-index-reader.ts","../src/core/types.ts"],"sourcesContent":["import { readFileSync, readdirSync, existsSync, realpathSync } from 'node:fs';\nimport { join, relative } from 'node:path';\nimport { FileIndexSchema, type FileIndex } from '../../core/types.js';\n\nexport class JsonIndexReader {\n  private readonly indexDir: string;\n\n  constructor(ctxoRoot: string) {\n    this.indexDir = join(ctxoRoot, 'index');\n  }\n\n  readAll(): FileIndex[] {\n    if (!existsSync(this.indexDir)) {\n      return [];\n    }\n\n    const jsonFiles = this.collectJsonFiles(this.indexDir);\n    const results: FileIndex[] = [];\n\n    for (const filePath of jsonFiles) {\n      const parsed = this.readSingle(filePath);\n      if (parsed) {\n        results.push(parsed);\n      }\n    }\n\n    return results;\n  }\n\n  readSingle(absolutePath: string): FileIndex | undefined {\n    try {\n      const raw = readFileSync(absolutePath, 'utf-8');\n      const data: unknown = JSON.parse(raw);\n      const result = FileIndexSchema.safeParse(data);\n\n      if (!result.success) {\n        const rel = relative(this.indexDir, absolutePath);\n        console.error(\n          `[ctxo:json-reader] Invalid schema in ${rel}: ${result.error.message}`,\n        );\n        return undefined;\n      }\n\n      return result.data;\n    } catch (err) {\n      const rel = relative(this.indexDir, absolutePath);\n      console.error(\n        `[ctxo:json-reader] Failed to read ${rel}: ${(err as Error).message}`,\n      );\n      return undefined;\n    }\n  }\n\n  private collectJsonFiles(dir: string, visited: Set<string> = new Set()): string[] {\n    const realDir = realpathSync(dir);\n    if (visited.has(realDir)) return []; // Guard against symlink loops\n    visited.add(realDir);\n\n    const files: string[] = [];\n\n    for (const entry of readdirSync(dir, { withFileTypes: true })) {\n      if (entry.isSymbolicLink()) continue; // Skip symlinks entirely\n\n      const fullPath = join(dir, entry.name);\n      if (entry.isDirectory()) {\n        files.push(...this.collectJsonFiles(fullPath, visited));\n      } else if (entry.name.endsWith('.json')) {\n        files.push(fullPath);\n      }\n    }\n\n    return files;\n  }\n}\n","import { z } from 'zod';\n\n// ── Symbol Kinds ────────────────────────────────────────────────\n\nexport const SYMBOL_KINDS = [\n  'function',\n  'class',\n  'interface',\n  'method',\n  'variable',\n  'type',\n] as const;\n\nexport const SymbolKindSchema = z.enum(SYMBOL_KINDS);\nexport type SymbolKind = z.infer<typeof SymbolKindSchema>;\n\n// ── Edge Kinds ──────────────────────────────────────────────────\n\nexport const EDGE_KINDS = [\n  'imports',\n  'calls',\n  'extends',\n  'implements',\n  'uses',\n] as const;\n\nexport const EdgeKindSchema = z.enum(EDGE_KINDS);\nexport type EdgeKind = z.infer<typeof EdgeKindSchema>;\n\n// ── Detail Levels ───────────────────────────────────────────────\n\nexport const DETAIL_LEVELS = [1, 2, 3, 4] as const;\n\nexport const DetailLevelSchema = z.union([\n  z.literal(1),\n  z.literal(2),\n  z.literal(3),\n  z.literal(4),\n]);\nexport type DetailLevel = z.infer<typeof DetailLevelSchema>;\n\n// ── Symbol ID ───────────────────────────────────────────────────\n\n/**\n * Format: \"<relativeFile>::<name>::<kind>\"\n * Example: \"src/foo.ts::myFn::function\"\n */\nexport const SymbolIdSchema = z\n  .string()\n  .min(1)\n  .refine(\n    (value) => {\n      const parts = value.split('::');\n      if (parts.length !== 3) return false;\n      const [file, name, kind] = parts;\n      if (!file || !name || !kind) return false;\n      return SymbolKindSchema.safeParse(kind).success;\n    },\n    { message: 'Symbol ID must match format \"<file>::<name>::<kind>\"' },\n  );\nexport type SymbolId = z.infer<typeof SymbolIdSchema>;\n\n// ── Symbol Node ─────────────────────────────────────────────────\n\nexport const SymbolNodeSchema = z\n  .object({\n    symbolId: SymbolIdSchema,\n    name: z.string().min(1),\n    kind: SymbolKindSchema,\n    startLine: z.number().int().nonnegative(),\n    endLine: z.number().int().nonnegative(),\n  })\n  .refine((node) => node.endLine >= node.startLine, {\n    message: 'endLine must be >= startLine',\n  });\nexport type SymbolNode = z.infer<typeof SymbolNodeSchema>;\n\n// ── Graph Edge ──────────────────────────────────────────────────\n\nexport const GraphEdgeSchema = z.object({\n  from: SymbolIdSchema,\n  to: SymbolIdSchema,\n  kind: EdgeKindSchema,\n});\nexport type GraphEdge = z.infer<typeof GraphEdgeSchema>;\n\n// ── Commit Intent ───────────────────────────────────────────────\n\nexport const CommitIntentSchema = z.object({\n  hash: z.string().min(1),\n  message: z.string(),\n  date: z.string().min(1),\n  kind: z.literal('commit'),\n});\nexport type CommitIntent = z.infer<typeof CommitIntentSchema>;\n\n// ── Anti-Pattern ────────────────────────────────────────────────\n\nexport const AntiPatternSchema = z.object({\n  hash: z.string().min(1),\n  message: z.string(),\n  date: z.string().min(1),\n});\nexport type AntiPattern = z.infer<typeof AntiPatternSchema>;\n\n// ── File Index ──────────────────────────────────────────────────\n\nexport const ComplexityMetricsSchema = z.object({\n  symbolId: z.string().min(1),\n  cyclomatic: z.number().nonnegative(),\n});\n\nexport const FileIndexSchema = z.object({\n  file: z.string().min(1),\n  lastModified: z.number().nonnegative(),\n  contentHash: z.string().optional(),\n  symbols: z.array(SymbolNodeSchema),\n  edges: z.array(GraphEdgeSchema),\n  complexity: z.array(ComplexityMetricsSchema).optional(),\n  intent: z.array(CommitIntentSchema),\n  antiPatterns: z.array(AntiPatternSchema),\n});\nexport type FileIndex = z.infer<typeof FileIndexSchema>;\n\n// ── Logic-Slice Result ──────────────────────────────────────────\n\nexport interface LogicSliceResult {\n  readonly root: SymbolNode;\n  readonly dependencies: readonly SymbolNode[];\n  readonly edges: readonly GraphEdge[];\n}\n\n// ── Formatted Slice ─────────────────────────────────────────────\n\nexport interface TruncationInfo {\n  readonly truncated: true;\n  readonly reason: 'token_budget_exceeded';\n}\n\nexport interface FormattedSlice {\n  readonly root: SymbolNode;\n  readonly dependencies: readonly SymbolNode[];\n  readonly edges: readonly GraphEdge[];\n  readonly level: DetailLevel;\n  readonly levelDescription?: string;\n  readonly truncation?: TruncationInfo;\n}\n\n// ── Complexity & Churn ──────────────────────────────────────────\n\nexport interface ComplexityMetrics {\n  readonly symbolId: string;\n  readonly cyclomatic: number;\n}\n\nexport interface ChurnData {\n  readonly filePath: string;\n  readonly commitCount: number;\n}\n\nexport const SCORE_BANDS = ['low', 'medium', 'high'] as 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package/dist/chunk-P7JUSY3I.js

@@ -0,0 +1,410 @@
+#!/usr/bin/env node
+import {
+  JsonIndexReader
+} from "./chunk-54ETLIQX.js";
+
+// src/adapters/storage/sqlite-storage-adapter.ts
+import initSqlJs from "sql.js";
+import { readFileSync, writeFileSync, existsSync, mkdirSync } from "fs";
+import { join, dirname } from "path";
+var SqliteStorageAdapter = class {
+  db;
+  dbPath;
+  ctxoRoot;
+  constructor(ctxoRoot) {
+    this.ctxoRoot = ctxoRoot;
+    this.dbPath = join(ctxoRoot, ".cache", "symbols.db");
+  }
+  async init() {
+    const SQL = await initSqlJs();
+    if (existsSync(this.dbPath)) {
+      try {
+        const buffer = readFileSync(this.dbPath);
+        this.db = new SQL.Database(buffer);
+        this.verifyIntegrity();
+      } catch {
+        console.error("[ctxo:sqlite] Corrupt DB detected, rebuilding from JSON index");
+        this.db = new SQL.Database();
+        this.createTables();
+        this.rebuildFromJson();
+      }
+    } else {
+      this.db = new SQL.Database();
+      this.createTables();
+      this.rebuildFromJson();
+    }
+  }
+  async initEmpty() {
+    const SQL = await initSqlJs();
+    this.db = new SQL.Database();
+    this.createTables();
+  }
+  database() {
+    if (!this.db) {
+      throw new Error("SqliteStorageAdapter not initialized. Call init() first.");
+    }
+    return this.db;
+  }
+  verifyIntegrity() {
+    const db = this.database();
+    const result = db.exec("PRAGMA integrity_check");
+    const firstRow = result[0]?.values[0];
+    if (!firstRow || firstRow[0] !== "ok") {
+      throw new Error("SQLite integrity check failed");
+    }
+    const tables = db.exec(
+      "SELECT name FROM sqlite_master WHERE type='table' AND name IN ('symbols', 'edges', 'files')"
+    );
+    if (!tables[0] || tables[0].values.length < 3) {
+      throw new Error("Missing required tables");
+    }
+  }
+  createTables() {
+    const db = this.database();
+    db.run(`
+      CREATE TABLE IF NOT EXISTS files (
+        file_path TEXT PRIMARY KEY,
+        last_modified INTEGER NOT NULL
+      )
+    `);
+    db.run(`
+      CREATE TABLE IF NOT EXISTS symbols (
+        symbol_id TEXT PRIMARY KEY,
+        name TEXT NOT NULL,
+        kind TEXT NOT NULL,
+        file_path TEXT NOT NULL,
+        start_line INTEGER NOT NULL,
+        end_line INTEGER NOT NULL
+      )
+    `);
+    db.run(`
+      CREATE TABLE IF NOT EXISTS edges (
+        id INTEGER PRIMARY KEY AUTOINCREMENT,
+        from_symbol TEXT NOT NULL,
+        to_symbol TEXT NOT NULL,
+        kind TEXT NOT NULL
+      )
+    `);
+    db.run("CREATE INDEX IF NOT EXISTS idx_symbols_file ON symbols(file_path)");
+    db.run("CREATE INDEX IF NOT EXISTS idx_edges_from ON edges(from_symbol)");
+    db.run("CREATE INDEX IF NOT EXISTS idx_edges_to ON edges(to_symbol)");
+  }
+  rebuildFromJson() {
+    const reader = new JsonIndexReader(this.ctxoRoot);
+    const indices = reader.readAll();
+    if (indices.length > 0) {
+      this.bulkWrite(indices);
+    }
+  }
+  writeSymbolFile(fileIndex) {
+    const db = this.database();
+    db.run("BEGIN TRANSACTION");
+    try {
+      this.deleteFileData(db, fileIndex.file);
+      db.run(
+        "INSERT INTO files (file_path, last_modified) VALUES (?, ?)",
+        [fileIndex.file, fileIndex.lastModified]
+      );
+      for (const sym of fileIndex.symbols) {
+        db.run(
+          "INSERT INTO symbols (symbol_id, name, kind, file_path, start_line, end_line) VALUES (?, ?, ?, ?, ?, ?)",
+          [sym.symbolId, sym.name, sym.kind, fileIndex.file, sym.startLine, sym.endLine]
+        );
+      }
+      for (const edge of fileIndex.edges) {
+        db.run(
+          "INSERT INTO edges (from_symbol, to_symbol, kind) VALUES (?, ?, ?)",
+          [edge.from, edge.to, edge.kind]
+        );
+      }
+      db.run("COMMIT");
+      this.persistIfNeeded();
+    } catch (err) {
+      db.run("ROLLBACK");
+      throw err;
+    }
+  }
+  /**
+   * Read symbol file from SQLite cache.
+   * NOTE: SQLite only caches symbols + edges (graph topology).
+   * intent, antiPatterns, and complexity live in committed JSON index only.
+   * Use JsonIndexReader for full FileIndex data.
+   */
+  readSymbolFile(relativePath) {
+    const db = this.database();
+    const fileResult = db.exec(
+      "SELECT file_path, last_modified FROM files WHERE file_path = ?",
+      [relativePath]
+    );
+    if (!fileResult[0] || fileResult[0].values.length === 0) {
+      return void 0;
+    }
+    const [filePath, lastModified] = fileResult[0].values[0];
+    const symbols = this.getSymbolsForFile(db, filePath);
+    const edges = this.getEdgesForFile(db, filePath);
+    return {
+      file: filePath,
+      lastModified,
+      symbols,
+      edges,
+      // Not stored in SQLite — use JsonIndexReader for these fields
+      intent: [],
+      antiPatterns: []
+    };
+  }
+  listIndexedFiles() {
+    const db = this.database();
+    const result = db.exec("SELECT file_path FROM files ORDER BY file_path");
+    if (!result[0]) return [];
+    return result[0].values.map((row) => row[0]);
+  }
+  deleteSymbolFile(relativePath) {
+    const db = this.database();
+    this.deleteFileData(db, relativePath);
+  }
+  getSymbolById(symbolId) {
+    const db = this.database();
+    const result = db.exec(
+      "SELECT symbol_id, name, kind, start_line, end_line FROM symbols WHERE symbol_id = ?",
+      [symbolId]
+    );
+    if (!result[0] || result[0].values.length === 0) {
+      return void 0;
+    }
+    const [sid, name, kind, startLine, endLine] = result[0].values[0];
+    return { symbolId: sid, name, kind, startLine, endLine };
+  }
+  getEdgesFrom(symbolId) {
+    const db = this.database();
+    const result = db.exec(
+      "SELECT from_symbol, to_symbol, kind FROM edges WHERE from_symbol = ?",
+      [symbolId]
+    );
+    if (!result[0]) return [];
+    return result[0].values.map((row) => ({
+      from: row[0],
+      to: row[1],
+      kind: row[2]
+    }));
+  }
+  getEdgesTo(symbolId) {
+    const db = this.database();
+    const result = db.exec(
+      "SELECT from_symbol, to_symbol, kind FROM edges WHERE to_symbol = ?",
+      [symbolId]
+    );
+    if (!result[0]) return [];
+    return result[0].values.map((row) => ({
+      from: row[0],
+      to: row[1],
+      kind: row[2]
+    }));
+  }
+  getAllSymbols() {
+    const db = this.database();
+    const result = db.exec(
+      "SELECT symbol_id, name, kind, start_line, end_line FROM symbols"
+    );
+    if (!result[0]) return [];
+    return result[0].values.map((row) => ({
+      symbolId: row[0],
+      name: row[1],
+      kind: row[2],
+      startLine: row[3],
+      endLine: row[4]
+    }));
+  }
+  getAllEdges() {
+    const db = this.database();
+    const result = db.exec(
+      "SELECT from_symbol, to_symbol, kind FROM edges"
+    );
+    if (!result[0]) return [];
+    return result[0].values.map((row) => ({
+      from: row[0],
+      to: row[1],
+      kind: row[2]
+    }));
+  }
+  bulkWrite(indices) {
+    const db = this.database();
+    db.run("BEGIN TRANSACTION");
+    try {
+      for (const fileIndex of indices) {
+        this.deleteFileData(db, fileIndex.file);
+        db.run(
+          "INSERT INTO files (file_path, last_modified) VALUES (?, ?)",
+          [fileIndex.file, fileIndex.lastModified]
+        );
+        for (const sym of fileIndex.symbols) {
+          db.run(
+            "INSERT INTO symbols (symbol_id, name, kind, file_path, start_line, end_line) VALUES (?, ?, ?, ?, ?, ?)",
+            [sym.symbolId, sym.name, sym.kind, fileIndex.file, sym.startLine, sym.endLine]
+          );
+        }
+        for (const edge of fileIndex.edges) {
+          db.run(
+            "INSERT INTO edges (from_symbol, to_symbol, kind) VALUES (?, ?, ?)",
+            [edge.from, edge.to, edge.kind]
+          );
+        }
+      }
+      db.run("COMMIT");
+      this.persistIfNeeded();
+    } catch (err) {
+      db.run("ROLLBACK");
+      throw err;
+    }
+  }
+  persist() {
+    const db = this.database();
+    const data = db.export();
+    const buffer = Buffer.from(data);
+    mkdirSync(dirname(this.dbPath), { recursive: true });
+    writeFileSync(this.dbPath, buffer);
+  }
+  close() {
+    if (this.db) {
+      this.persist();
+      this.db.close();
+      this.db = void 0;
+    }
+  }
+  persistIfNeeded() {
+    try {
+      this.persist();
+    } catch (err) {
+      console.error(`[ctxo:sqlite] Failed to persist DB: ${err.message}`);
+    }
+  }
+  deleteFileData(db, filePath) {
+    const symResult = db.exec(
+      "SELECT symbol_id FROM symbols WHERE file_path = ?",
+      [filePath]
+    );
+    if (symResult[0]) {
+      for (const row of symResult[0].values) {
+        db.run("DELETE FROM edges WHERE from_symbol = ?", [row[0]]);
+      }
+    }
+    db.run("DELETE FROM symbols WHERE file_path = ?", [filePath]);
+    db.run("DELETE FROM files WHERE file_path = ?", [filePath]);
+  }
+  getSymbolsForFile(db, filePath) {
+    const result = db.exec(
+      "SELECT symbol_id, name, kind, start_line, end_line FROM symbols WHERE file_path = ? ORDER BY start_line",
+      [filePath]
+    );
+    if (!result[0]) return [];
+    return result[0].values.map((row) => ({
+      symbolId: row[0],
+      name: row[1],
+      kind: row[2],
+      startLine: row[3],
+      endLine: row[4]
+    }));
+  }
+  getEdgesForFile(db, filePath) {
+    const result = db.exec(
+      `SELECT e.from_symbol, e.to_symbol, e.kind FROM edges e
+       INNER JOIN symbols s ON e.from_symbol = s.symbol_id
+       WHERE s.file_path = ?`,
+      [filePath]
+    );
+    if (!result[0]) return [];
+    return result[0].values.map((row) => ({
+      from: row[0],
+      to: row[1],
+      kind: row[2]
+    }));
+  }
+};
+
+// src/adapters/git/simple-git-adapter.ts
+import { simpleGit } from "simple-git";
+var SimpleGitAdapter = class {
+  git;
+  constructor(projectRoot) {
+    this.git = simpleGit(projectRoot);
+  }
+  async isAvailable() {
+    try {
+      await this.git.version();
+      return true;
+    } catch {
+      return false;
+    }
+  }
+  async getCommitHistory(filePath) {
+    try {
+      const log = await this.git.log({ file: filePath, "--follow": null });
+      return log.all.map((entry) => ({
+        hash: entry.hash,
+        message: entry.message,
+        date: entry.date,
+        author: entry.author_name
+      }));
+    } catch (err) {
+      console.error(`[ctxo:git] Failed to get history for ${filePath}: ${err.message}`);
+      return [];
+    }
+  }
+  async getFileChurn(filePath) {
+    try {
+      const log = await this.git.log({ file: filePath, "--follow": null });
+      return {
+        filePath,
+        commitCount: log.total
+      };
+    } catch (err) {
+      console.error(`[ctxo:git] Failed to get churn for ${filePath}: ${err.message}`);
+      return { filePath, commitCount: 0 };
+    }
+  }
+};
+
+// src/core/why-context/revert-detector.ts
+var REVERT_QUOTED_PATTERN = /^Revert "(.+)"$/;
+var REVERT_PREFIX_PATTERN = /^revert:\s*(.+)$/i;
+var UNDO_PATTERN = /^undo[:\s]/i;
+var ROLLBACK_PATTERN = /^rollback[:\s]/i;
+var INDIRECT_KEYWORDS = [
+  /\brevert(?:s|ed|ing)?\b/i,
+  /\broll(?:s|ed|ing)?\s*back\b/i,
+  /\bundo(?:es|ne|ing)?\b/i,
+  /\bbacked?\s*out\b/i,
+  /\bremov(?:e|es|ed|ing)\s+(?:broken|buggy|faulty)\b/i
+];
+var RevertDetector = class {
+  detect(commits) {
+    const antiPatterns = [];
+    for (const commit of commits) {
+      if (!commit.message) continue;
+      if (this.isRevert(commit.message)) {
+        antiPatterns.push({
+          hash: commit.hash,
+          message: commit.message,
+          date: commit.date
+        });
+      }
+    }
+    return antiPatterns;
+  }
+  isRevert(message) {
+    if (REVERT_QUOTED_PATTERN.test(message)) return true;
+    if (REVERT_PREFIX_PATTERN.test(message)) return true;
+    if (UNDO_PATTERN.test(message)) return true;
+    if (ROLLBACK_PATTERN.test(message)) return true;
+    for (const pattern of INDIRECT_KEYWORDS) {
+      if (pattern.test(message)) return true;
+    }
+    return false;
+  }
+};
+
+export {
+  SqliteStorageAdapter,
+  RevertDetector,
+  SimpleGitAdapter
+};
+//# sourceMappingURL=chunk-P7JUSY3I.js.map

package/dist/chunk-P7JUSY3I.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/adapters/storage/sqlite-storage-adapter.ts","../src/adapters/git/simple-git-adapter.ts","../src/core/why-context/revert-detector.ts"],"sourcesContent":["import initSqlJs, { type Database } from 'sql.js';\nimport { readFileSync, writeFileSync, existsSync, mkdirSync } from 'node:fs';\nimport { join, dirname } from 'node:path';\nimport type { FileIndex, GraphEdge, SymbolNode } from '../../core/types.js';\nimport type { IStoragePort } from '../../ports/i-storage-port.js';\nimport { JsonIndexReader } from './json-index-reader.js';\n\nexport class SqliteStorageAdapter implements IStoragePort {\n  private db: Database | undefined;\n  private readonly dbPath: string;\n  private readonly ctxoRoot: string;\n\n  constructor(ctxoRoot: string) {\n    this.ctxoRoot = ctxoRoot;\n    this.dbPath = join(ctxoRoot, '.cache', 'symbols.db');\n  }\n\n  async init(): Promise<void> {\n    const SQL = await initSqlJs();\n\n    if (existsSync(this.dbPath)) {\n      try {\n        const buffer = readFileSync(this.dbPath);\n        this.db = new SQL.Database(buffer);\n        this.verifyIntegrity();\n      } catch {\n        console.error('[ctxo:sqlite] Corrupt DB detected, rebuilding from JSON index');\n        this.db = new SQL.Database();\n        this.createTables();\n        this.rebuildFromJson();\n      }\n    } else {\n      this.db = new SQL.Database();\n      this.createTables();\n      this.rebuildFromJson();\n    }\n  }\n\n  async initEmpty(): Promise<void> {\n    const SQL = await initSqlJs();\n    this.db = new SQL.Database();\n    this.createTables();\n  }\n\n  private database(): Database {\n    if (!this.db) {\n      throw new Error('SqliteStorageAdapter not initialized. Call init() first.');\n    }\n    return this.db;\n  }\n\n  private verifyIntegrity(): void {\n    const db = this.database();\n    const result = db.exec('PRAGMA integrity_check');\n    const firstRow = result[0]?.values[0];\n    if (!firstRow || firstRow[0] !== 'ok') {\n      throw new Error('SQLite integrity check failed');\n    }\n\n    const tables = db.exec(\n      \"SELECT name FROM sqlite_master WHERE type='table' AND name IN ('symbols', 'edges', 'files')\",\n    );\n    if (!tables[0] || tables[0].values.length < 3) {\n      throw new Error('Missing required tables');\n    }\n  }\n\n  private createTables(): void {\n    const db = this.database();\n    db.run(`\n      CREATE TABLE IF NOT EXISTS files (\n        file_path TEXT PRIMARY KEY,\n        last_modified INTEGER NOT NULL\n      )\n    `);\n    db.run(`\n      CREATE TABLE IF NOT EXISTS symbols (\n        symbol_id TEXT PRIMARY KEY,\n        name TEXT NOT NULL,\n        kind TEXT NOT NULL,\n        file_path TEXT NOT NULL,\n        start_line INTEGER NOT NULL,\n        end_line INTEGER NOT NULL\n      )\n    `);\n    db.run(`\n      CREATE TABLE IF NOT EXISTS edges (\n        id INTEGER PRIMARY KEY AUTOINCREMENT,\n        from_symbol TEXT NOT NULL,\n        to_symbol TEXT NOT NULL,\n        kind TEXT NOT NULL\n      )\n    `);\n    db.run('CREATE INDEX IF NOT EXISTS idx_symbols_file ON symbols(file_path)');\n    db.run('CREATE INDEX IF NOT EXISTS idx_edges_from ON edges(from_symbol)');\n    db.run('CREATE INDEX IF NOT EXISTS idx_edges_to ON edges(to_symbol)');\n  }\n\n  private rebuildFromJson(): void {\n    const reader = new JsonIndexReader(this.ctxoRoot);\n    const indices = reader.readAll();\n\n    if (indices.length > 0) {\n      this.bulkWrite(indices);\n    }\n  }\n\n  writeSymbolFile(fileIndex: FileIndex): void {\n    const db = this.database();\n\n    db.run('BEGIN TRANSACTION');\n    try {\n      this.deleteFileData(db, fileIndex.file);\n\n      db.run(\n        'INSERT INTO files (file_path, last_modified) VALUES (?, ?)',\n        [fileIndex.file, fileIndex.lastModified],\n      );\n\n      for (const sym of fileIndex.symbols) {\n        db.run(\n          'INSERT INTO symbols (symbol_id, name, kind, file_path, start_line, end_line) VALUES (?, ?, ?, ?, ?, ?)',\n          [sym.symbolId, sym.name, sym.kind, fileIndex.file, sym.startLine, sym.endLine],\n        );\n      }\n\n      for (const edge of fileIndex.edges) {\n        db.run(\n          'INSERT INTO edges (from_symbol, to_symbol, kind) VALUES (?, ?, ?)',\n          [edge.from, edge.to, edge.kind],\n        );\n      }\n\n      db.run('COMMIT');\n      this.persistIfNeeded();\n    } catch (err) {\n      db.run('ROLLBACK');\n      throw err;\n    }\n  }\n\n  /**\n   * Read symbol file from SQLite cache.\n   * NOTE: SQLite only caches symbols + edges (graph topology).\n   * intent, antiPatterns, and complexity live in committed JSON index only.\n   * Use JsonIndexReader for full FileIndex data.\n   */\n  readSymbolFile(relativePath: string): FileIndex | undefined {\n    const db = this.database();\n\n    const fileResult = db.exec(\n      'SELECT file_path, last_modified FROM files WHERE file_path = ?',\n      [relativePath],\n    );\n    if (!fileResult[0] || fileResult[0].values.length === 0) {\n      return undefined;\n    }\n\n    const [filePath, lastModified] = fileResult[0].values[0] as [string, number];\n\n    const symbols = this.getSymbolsForFile(db, filePath);\n    const edges = this.getEdgesForFile(db, filePath);\n\n    return {\n      file: filePath,\n      lastModified,\n      symbols,\n      edges,\n      // Not stored in SQLite — use JsonIndexReader for these fields\n      intent: [],\n      antiPatterns: [],\n    };\n  }\n\n  listIndexedFiles(): string[] {\n    const db = this.database();\n    const result = db.exec('SELECT file_path FROM files ORDER BY file_path');\n    if (!result[0]) return [];\n    return result[0].values.map((row) => row[0] as string);\n  }\n\n  deleteSymbolFile(relativePath: string): void {\n    const db = this.database();\n    this.deleteFileData(db, relativePath);\n  }\n\n  getSymbolById(symbolId: string): SymbolNode | undefined {\n    const db = this.database();\n    const result = db.exec(\n      'SELECT symbol_id, name, kind, start_line, end_line FROM symbols WHERE symbol_id = ?',\n      [symbolId],\n    );\n    if (!result[0] || result[0].values.length === 0) {\n      return undefined;\n    }\n\n    const [sid, name, kind, startLine, endLine] = result[0].values[0] as [string, string, string, number, number];\n    return { symbolId: sid, name, kind: kind as SymbolNode['kind'], startLine, endLine };\n  }\n\n  getEdgesFrom(symbolId: string): GraphEdge[] {\n    const db = this.database();\n    const result = db.exec(\n      'SELECT from_symbol, to_symbol, kind FROM edges WHERE from_symbol = ?',\n      [symbolId],\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      from: row[0] as string,\n      to: row[1] as string,\n      kind: row[2] as GraphEdge['kind'],\n    }));\n  }\n\n  getEdgesTo(symbolId: string): GraphEdge[] {\n    const db = this.database();\n    const result = db.exec(\n      'SELECT from_symbol, to_symbol, kind FROM edges WHERE to_symbol = ?',\n      [symbolId],\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      from: row[0] as string,\n      to: row[1] as string,\n      kind: row[2] as GraphEdge['kind'],\n    }));\n  }\n\n  getAllSymbols(): SymbolNode[] {\n    const db = this.database();\n    const result = db.exec(\n      'SELECT symbol_id, name, kind, start_line, end_line FROM symbols',\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      symbolId: row[0] as string,\n      name: row[1] as string,\n      kind: row[2] as SymbolNode['kind'],\n      startLine: row[3] as number,\n      endLine: row[4] as number,\n    }));\n  }\n\n  getAllEdges(): GraphEdge[] {\n    const db = this.database();\n    const result = db.exec(\n      'SELECT from_symbol, to_symbol, kind FROM edges',\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      from: row[0] as string,\n      to: row[1] as string,\n      kind: row[2] as GraphEdge['kind'],\n    }));\n  }\n\n  bulkWrite(indices: FileIndex[]): void {\n    const db = this.database();\n\n    db.run('BEGIN TRANSACTION');\n    try {\n      for (const fileIndex of indices) {\n        this.deleteFileData(db, fileIndex.file);\n\n        db.run(\n          'INSERT INTO files (file_path, last_modified) VALUES (?, ?)',\n          [fileIndex.file, fileIndex.lastModified],\n        );\n\n        for (const sym of fileIndex.symbols) {\n          db.run(\n            'INSERT INTO symbols (symbol_id, name, kind, file_path, start_line, end_line) VALUES (?, ?, ?, ?, ?, ?)',\n            [sym.symbolId, sym.name, sym.kind, fileIndex.file, sym.startLine, sym.endLine],\n          );\n        }\n\n        for (const edge of fileIndex.edges) {\n          db.run(\n            'INSERT INTO edges (from_symbol, to_symbol, kind) VALUES (?, ?, ?)',\n            [edge.from, edge.to, edge.kind],\n          );\n        }\n      }\n\n      db.run('COMMIT');\n      this.persistIfNeeded();\n    } catch (err) {\n      db.run('ROLLBACK');\n      throw err;\n    }\n  }\n\n  persist(): void {\n    const db = this.database();\n    const data = db.export();\n    const buffer = Buffer.from(data);\n    mkdirSync(dirname(this.dbPath), { recursive: true });\n    writeFileSync(this.dbPath, buffer);\n  }\n\n  close(): void {\n    if (this.db) {\n      this.persist();\n      this.db.close();\n      this.db = undefined;\n    }\n  }\n\n  private persistIfNeeded(): void {\n    try {\n      this.persist();\n    } catch (err) {\n      console.error(`[ctxo:sqlite] Failed to persist DB: ${(err as Error).message}`);\n    }\n  }\n\n  private deleteFileData(db: Database, filePath: string): void {\n    // Delete edges originating from this file's symbols\n    const symResult = db.exec(\n      'SELECT symbol_id FROM symbols WHERE file_path = ?',\n      [filePath],\n    );\n    if (symResult[0]) {\n      for (const row of symResult[0].values) {\n        db.run('DELETE FROM edges WHERE from_symbol = ?', [row[0]]);\n      }\n    }\n    db.run('DELETE FROM symbols WHERE file_path = ?', [filePath]);\n    db.run('DELETE FROM files WHERE file_path = ?', [filePath]);\n  }\n\n  private getSymbolsForFile(db: Database, filePath: string): SymbolNode[] {\n    const result = db.exec(\n      'SELECT symbol_id, name, kind, start_line, end_line FROM symbols WHERE file_path = ? ORDER BY start_line',\n      [filePath],\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      symbolId: row[0] as string,\n      name: row[1] as string,\n      kind: row[2] as SymbolNode['kind'],\n      startLine: row[3] as number,\n      endLine: row[4] as number,\n    }));\n  }\n\n  private getEdgesForFile(db: Database, filePath: string): GraphEdge[] {\n    const result = db.exec(\n      `SELECT e.from_symbol, e.to_symbol, e.kind FROM edges e\n       INNER JOIN symbols s ON e.from_symbol = s.symbol_id\n       WHERE s.file_path = ?`,\n      [filePath],\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      from: row[0] as string,\n      to: row[1] as string,\n      kind: row[2] as GraphEdge['kind'],\n    }));\n  }\n}\n","import { simpleGit, type SimpleGit } from 'simple-git';\nimport type { IGitPort } from '../../ports/i-git-port.js';\nimport type { CommitRecord, ChurnData } from '../../core/types.js';\n\nexport class SimpleGitAdapter implements IGitPort {\n  private readonly git: SimpleGit;\n\n  constructor(projectRoot: string) {\n    this.git = simpleGit(projectRoot);\n  }\n\n  async isAvailable(): Promise<boolean> {\n    try {\n      await this.git.version();\n      return true;\n    } catch {\n      return false;\n    }\n  }\n\n  async getCommitHistory(filePath: string): Promise<CommitRecord[]> {\n    try {\n      const log = await this.git.log({ file: filePath, '--follow': null });\n\n      return log.all.map((entry) => ({\n        hash: entry.hash,\n        message: entry.message,\n        date: entry.date,\n        author: entry.author_name,\n      }));\n    } catch (err) {\n      console.error(`[ctxo:git] Failed to get history for ${filePath}: ${(err as Error).message}`);\n      return [];\n    }\n  }\n\n  async getFileChurn(filePath: string): Promise<ChurnData> {\n    try {\n      const log = await this.git.log({ file: filePath, '--follow': null });\n\n      return {\n        filePath,\n        commitCount: log.total,\n      };\n    } catch (err) {\n      console.error(`[ctxo:git] Failed to get churn for ${filePath}: ${(err as Error).message}`);\n      return { filePath, commitCount: 0 };\n    }\n  }\n}\n","import type { CommitRecord, AntiPattern } from '../types.js';\n\n// Explicit revert patterns\nconst REVERT_QUOTED_PATTERN = /^Revert \"(.+)\"$/;\nconst REVERT_PREFIX_PATTERN = /^revert:\\s*(.+)$/i;\n\n// Undo/rollback patterns\nconst UNDO_PATTERN = /^undo[:\\s]/i;\nconst ROLLBACK_PATTERN = /^rollback[:\\s]/i;\n\n// Indirect revert indicators (keywords in commit message body)\nconst INDIRECT_KEYWORDS = [\n  /\\brevert(?:s|ed|ing)?\\b/i,\n  /\\broll(?:s|ed|ing)?\\s*back\\b/i,\n  /\\bundo(?:es|ne|ing)?\\b/i,\n  /\\bbacked?\\s*out\\b/i,\n  /\\bremov(?:e|es|ed|ing)\\s+(?:broken|buggy|faulty)\\b/i,\n];\n\nexport class RevertDetector {\n  detect(commits: readonly CommitRecord[]): AntiPattern[] {\n    const antiPatterns: AntiPattern[] = [];\n\n    for (const commit of commits) {\n      if (!commit.message) continue;\n\n      if (this.isRevert(commit.message)) {\n        antiPatterns.push({\n          hash: commit.hash,\n          message: commit.message,\n          date: commit.date,\n        });\n      }\n    }\n\n    return antiPatterns;\n  }\n\n  private isRevert(message: string): boolean {\n    // Explicit patterns (high confidence)\n    if (REVERT_QUOTED_PATTERN.test(message)) return true;\n    if (REVERT_PREFIX_PATTERN.test(message)) return true;\n    if (UNDO_PATTERN.test(message)) return true;\n    if (ROLLBACK_PATTERN.test(message)) return true;\n\n    // Indirect indicators (keyword search in full message)\n    for (const pattern of INDIRECT_KEYWORDS) {\n      if (pattern.test(message)) return true;\n    }\n\n    return false;\n  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