create-yss-spec 3.5.2 → 3.5.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (438) hide show
  1. package/package.json +1 -1
  2. package/src/template/asset-runtime.js +3 -1
  3. package/template/.agents/skills/.strategic-design-skills-manifest.json +1 -1
  4. package/template/.agents/skills/codebase-design/SKILL.md +4 -0
  5. package/template/{.codex/skills/improve-codebase-architecture/SKILL.md → .agents/skills/codebase-design/references/architecture-audit.md} +3 -9
  6. package/template/.agents/skills/frontend-commit/SKILL.md +4 -93
  7. package/template/.agents/skills/git-commit-core/SKILL.md +18 -0
  8. package/template/.agents/skills/java-backend-commit/SKILL.md +4 -96
  9. package/template/.agents/skills/llm-wiki/SKILL.md +12 -13
  10. package/template/.agents/skills/llm-wiki/assets/CLAUDE.md.template +7 -1
  11. package/template/.agents/skills/llm-wiki/references/compile.md +21 -114
  12. package/template/.agents/skills/llm-wiki/references/ingest.md +8 -33
  13. package/template/.agents/skills/llm-wiki/references/lint.md +9 -46
  14. package/template/.agents/skills/llm-wiki/references/query.md +9 -18
  15. package/template/.agents/skills/llm-wiki/references/schema.md +56 -29
  16. package/template/.agents/skills/llm-wiki/references/transactions.md +48 -0
  17. package/template/.agents/skills/llm-wiki/references/writing.md +4 -4
  18. package/template/.agents/skills/llm-wiki/scripts/advise.mjs +46 -58
  19. package/template/.agents/skills/llm-wiki/scripts/advise.test.mjs +11 -16
  20. package/template/.agents/skills/llm-wiki/scripts/core.mjs +262 -0
  21. package/template/.agents/skills/llm-wiki/scripts/extract.mjs +35 -18
  22. package/template/.agents/skills/llm-wiki/scripts/extract.test.mjs +5 -8
  23. package/template/.agents/skills/llm-wiki/scripts/feedback.mjs +51 -0
  24. package/template/.agents/skills/llm-wiki/scripts/inventory.mjs +43 -171
  25. package/template/.agents/skills/llm-wiki/scripts/inventory.test.mjs +25 -18
  26. package/template/.agents/skills/llm-wiki/scripts/lint-wikilinks.mjs +69 -92
  27. package/template/.agents/skills/llm-wiki/scripts/lint-wikilinks.test.mjs +25 -37
  28. package/template/.agents/skills/llm-wiki/scripts/migrate.mjs +51 -0
  29. package/template/.agents/skills/llm-wiki/scripts/query.mjs +149 -0
  30. package/template/.agents/skills/llm-wiki/scripts/regressions.test.mjs +101 -0
  31. package/template/.agents/skills/llm-wiki/scripts/sources.mjs +166 -0
  32. package/template/.agents/skills/llm-wiki/scripts/transaction.mjs +384 -0
  33. package/template/.agents/skills/llm-wiki/scripts/v2.test.mjs +354 -0
  34. package/template/.agents/skills/prototype/LOGIC.md +1 -1
  35. package/template/.agents/skills/prototype/SKILL.md +5 -19
  36. package/template/.agents/skills/setup-matt-pocock-skills/SKILL.md +3 -3
  37. package/template/.agents/skills/yss-implementation-contract-compiler/SKILL.md +2 -0
  38. package/template/.agents/skills/yss-implementation-contract-compiler/references/boundaries.md +2 -3
  39. package/template/.agents/skills/yss-implementation-contract-compiler/references/yss-skill-execution-result.md +14 -0
  40. package/template/.agents/skills/yss-product-lifecycle/SKILL.md +8 -8
  41. package/template/.agents/skills/yss-product-lifecycle/references/external-input-questionnaire.md +19 -0
  42. package/template/.agents/skills/yss-product-lifecycle/references/matt-yss-adapter.md +5 -5
  43. package/template/.agents/skills/yss-product-lifecycle/references/orchestration-contract.yaml +20 -4
  44. package/template/.agents/skills/yss-product-lifecycle/references/orchestration.md +2 -2
  45. package/template/.agents/skills/yss-product-lifecycle/references/plan-requirements.md +10 -0
  46. package/template/.agents/skills/yss-product-lifecycle/references/state-model.md +1 -1
  47. package/template/.agents/skills/yss-research/SKILL.md +4 -0
  48. package/template/.codex/skills/codebase-design/SKILL.md +4 -0
  49. package/template/{.pi/skills/improve-codebase-architecture/SKILL.md → .codex/skills/codebase-design/references/architecture-audit.md} +3 -9
  50. package/template/.codex/skills/frontend-commit/SKILL.md +4 -93
  51. package/template/.codex/skills/git-commit-core/SKILL.md +18 -0
  52. package/template/.codex/skills/java-backend-commit/SKILL.md +4 -96
  53. package/template/.codex/skills/llm-wiki/SKILL.md +12 -13
  54. package/template/.codex/skills/llm-wiki/assets/CLAUDE.md.template +7 -1
  55. package/template/.codex/skills/llm-wiki/references/compile.md +21 -114
  56. package/template/.codex/skills/llm-wiki/references/ingest.md +8 -33
  57. package/template/.codex/skills/llm-wiki/references/lint.md +9 -46
  58. package/template/.codex/skills/llm-wiki/references/query.md +9 -18
  59. package/template/.codex/skills/llm-wiki/references/schema.md +56 -29
  60. package/template/.codex/skills/llm-wiki/references/transactions.md +48 -0
  61. package/template/.codex/skills/llm-wiki/references/writing.md +4 -4
  62. package/template/.codex/skills/llm-wiki/scripts/advise.mjs +46 -58
  63. package/template/.codex/skills/llm-wiki/scripts/advise.test.mjs +11 -16
  64. package/template/.codex/skills/llm-wiki/scripts/core.mjs +262 -0
  65. package/template/.codex/skills/llm-wiki/scripts/extract.mjs +35 -18
  66. package/template/.codex/skills/llm-wiki/scripts/extract.test.mjs +5 -8
  67. package/template/.codex/skills/llm-wiki/scripts/feedback.mjs +51 -0
  68. package/template/.codex/skills/llm-wiki/scripts/inventory.mjs +43 -171
  69. package/template/.codex/skills/llm-wiki/scripts/inventory.test.mjs +25 -18
  70. package/template/.codex/skills/llm-wiki/scripts/lint-wikilinks.mjs +69 -92
  71. package/template/.codex/skills/llm-wiki/scripts/lint-wikilinks.test.mjs +25 -37
  72. package/template/.codex/skills/llm-wiki/scripts/migrate.mjs +51 -0
  73. package/template/.codex/skills/llm-wiki/scripts/query.mjs +149 -0
  74. package/template/.codex/skills/llm-wiki/scripts/regressions.test.mjs +101 -0
  75. package/template/.codex/skills/llm-wiki/scripts/sources.mjs +166 -0
  76. package/template/.codex/skills/llm-wiki/scripts/transaction.mjs +384 -0
  77. package/template/.codex/skills/llm-wiki/scripts/v2.test.mjs +354 -0
  78. package/template/.codex/skills/prototype/LOGIC.md +1 -1
  79. package/template/.codex/skills/prototype/SKILL.md +5 -19
  80. package/template/.codex/skills/setup-matt-pocock-skills/SKILL.md +3 -3
  81. package/template/.codex/skills/yss-implementation-contract-compiler/SKILL.md +2 -0
  82. package/template/.codex/skills/yss-implementation-contract-compiler/references/boundaries.md +2 -3
  83. package/template/.codex/skills/yss-implementation-contract-compiler/references/yss-skill-execution-result.md +14 -0
  84. package/template/.codex/skills/yss-product-lifecycle/SKILL.md +8 -8
  85. package/template/.codex/skills/yss-product-lifecycle/references/external-input-questionnaire.md +19 -0
  86. package/template/.codex/skills/yss-product-lifecycle/references/matt-yss-adapter.md +5 -5
  87. package/template/.codex/skills/yss-product-lifecycle/references/orchestration-contract.yaml +20 -4
  88. package/template/.codex/skills/yss-product-lifecycle/references/orchestration.md +2 -2
  89. package/template/.codex/skills/yss-product-lifecycle/references/plan-requirements.md +10 -0
  90. package/template/.codex/skills/yss-product-lifecycle/references/state-model.md +1 -1
  91. package/template/.codex/skills/yss-research/SKILL.md +4 -0
  92. package/template/.cursor/skills/codebase-design/SKILL.md +4 -0
  93. package/template/.cursor/skills/{improve-codebase-architecture/SKILL.md → codebase-design/references/architecture-audit.md} +3 -9
  94. package/template/.cursor/skills/frontend-commit/SKILL.md +4 -93
  95. package/template/.cursor/skills/git-commit-core/SKILL.md +18 -0
  96. package/template/.cursor/skills/java-backend-commit/SKILL.md +4 -96
  97. package/template/.cursor/skills/llm-wiki/SKILL.md +12 -13
  98. package/template/.cursor/skills/llm-wiki/assets/CLAUDE.md.template +7 -1
  99. package/template/.cursor/skills/llm-wiki/references/compile.md +21 -114
  100. package/template/.cursor/skills/llm-wiki/references/ingest.md +8 -33
  101. package/template/.cursor/skills/llm-wiki/references/lint.md +9 -46
  102. package/template/.cursor/skills/llm-wiki/references/query.md +9 -18
  103. package/template/.cursor/skills/llm-wiki/references/schema.md +56 -29
  104. package/template/.cursor/skills/llm-wiki/references/transactions.md +48 -0
  105. package/template/.cursor/skills/llm-wiki/references/writing.md +4 -4
  106. package/template/.cursor/skills/llm-wiki/scripts/advise.mjs +46 -58
  107. package/template/.cursor/skills/llm-wiki/scripts/advise.test.mjs +11 -16
  108. package/template/.cursor/skills/llm-wiki/scripts/core.mjs +262 -0
  109. package/template/.cursor/skills/llm-wiki/scripts/extract.mjs +35 -18
  110. package/template/.cursor/skills/llm-wiki/scripts/extract.test.mjs +5 -8
  111. package/template/.cursor/skills/llm-wiki/scripts/feedback.mjs +51 -0
  112. package/template/.cursor/skills/llm-wiki/scripts/inventory.mjs +43 -171
  113. package/template/.cursor/skills/llm-wiki/scripts/inventory.test.mjs +25 -18
  114. package/template/.cursor/skills/llm-wiki/scripts/lint-wikilinks.mjs +69 -92
  115. package/template/.cursor/skills/llm-wiki/scripts/lint-wikilinks.test.mjs +25 -37
  116. package/template/.cursor/skills/llm-wiki/scripts/migrate.mjs +51 -0
  117. package/template/.cursor/skills/llm-wiki/scripts/query.mjs +149 -0
  118. package/template/.cursor/skills/llm-wiki/scripts/regressions.test.mjs +101 -0
  119. package/template/.cursor/skills/llm-wiki/scripts/sources.mjs +166 -0
  120. package/template/.cursor/skills/llm-wiki/scripts/transaction.mjs +384 -0
  121. package/template/.cursor/skills/llm-wiki/scripts/v2.test.mjs +354 -0
  122. package/template/.cursor/skills/prototype/LOGIC.md +1 -1
  123. package/template/.cursor/skills/prototype/SKILL.md +5 -19
  124. package/template/.cursor/skills/setup-matt-pocock-skills/SKILL.md +3 -3
  125. package/template/.cursor/skills/yss-implementation-contract-compiler/SKILL.md +2 -0
  126. package/template/.cursor/skills/yss-implementation-contract-compiler/references/boundaries.md +2 -3
  127. package/template/.cursor/skills/yss-implementation-contract-compiler/references/yss-skill-execution-result.md +14 -0
  128. package/template/.cursor/skills/yss-product-lifecycle/SKILL.md +8 -8
  129. package/template/.cursor/skills/yss-product-lifecycle/references/external-input-questionnaire.md +19 -0
  130. package/template/.cursor/skills/yss-product-lifecycle/references/matt-yss-adapter.md +5 -5
  131. package/template/.cursor/skills/yss-product-lifecycle/references/orchestration-contract.yaml +20 -4
  132. package/template/.cursor/skills/yss-product-lifecycle/references/orchestration.md +2 -2
  133. package/template/.cursor/skills/yss-product-lifecycle/references/plan-requirements.md +10 -0
  134. package/template/.cursor/skills/yss-product-lifecycle/references/state-model.md +1 -1
  135. package/template/.cursor/skills/yss-research/SKILL.md +4 -0
  136. package/template/.pi/skills/codebase-design/SKILL.md +4 -0
  137. package/template/{.agents/skills/improve-codebase-architecture/SKILL.md → .pi/skills/codebase-design/references/architecture-audit.md} +3 -9
  138. package/template/.pi/skills/frontend-commit/SKILL.md +4 -93
  139. package/template/.pi/skills/git-commit-core/SKILL.md +18 -0
  140. package/template/.pi/skills/java-backend-commit/SKILL.md +4 -96
  141. package/template/.pi/skills/llm-wiki/SKILL.md +12 -13
  142. package/template/.pi/skills/llm-wiki/assets/CLAUDE.md.template +7 -1
  143. package/template/.pi/skills/llm-wiki/references/compile.md +21 -114
  144. package/template/.pi/skills/llm-wiki/references/ingest.md +8 -33
  145. package/template/.pi/skills/llm-wiki/references/lint.md +9 -46
  146. package/template/.pi/skills/llm-wiki/references/query.md +9 -18
  147. package/template/.pi/skills/llm-wiki/references/schema.md +56 -29
  148. package/template/.pi/skills/llm-wiki/references/transactions.md +48 -0
  149. package/template/.pi/skills/llm-wiki/references/writing.md +4 -4
  150. package/template/.pi/skills/llm-wiki/scripts/advise.mjs +46 -58
  151. package/template/.pi/skills/llm-wiki/scripts/advise.test.mjs +11 -16
  152. package/template/.pi/skills/llm-wiki/scripts/core.mjs +262 -0
  153. package/template/.pi/skills/llm-wiki/scripts/extract.mjs +35 -18
  154. package/template/.pi/skills/llm-wiki/scripts/extract.test.mjs +5 -8
  155. package/template/.pi/skills/llm-wiki/scripts/feedback.mjs +51 -0
  156. package/template/.pi/skills/llm-wiki/scripts/inventory.mjs +43 -171
  157. package/template/.pi/skills/llm-wiki/scripts/inventory.test.mjs +25 -18
  158. package/template/.pi/skills/llm-wiki/scripts/lint-wikilinks.mjs +69 -92
  159. package/template/.pi/skills/llm-wiki/scripts/lint-wikilinks.test.mjs +25 -37
  160. package/template/.pi/skills/llm-wiki/scripts/migrate.mjs +51 -0
  161. package/template/.pi/skills/llm-wiki/scripts/query.mjs +149 -0
  162. package/template/.pi/skills/llm-wiki/scripts/regressions.test.mjs +101 -0
  163. package/template/.pi/skills/llm-wiki/scripts/sources.mjs +166 -0
  164. package/template/.pi/skills/llm-wiki/scripts/transaction.mjs +384 -0
  165. package/template/.pi/skills/llm-wiki/scripts/v2.test.mjs +354 -0
  166. package/template/.pi/skills/prototype/LOGIC.md +1 -1
  167. package/template/.pi/skills/prototype/SKILL.md +5 -19
  168. package/template/.pi/skills/setup-matt-pocock-skills/SKILL.md +3 -3
  169. package/template/.pi/skills/yss-implementation-contract-compiler/SKILL.md +2 -0
  170. package/template/.pi/skills/yss-implementation-contract-compiler/references/boundaries.md +2 -3
  171. package/template/.pi/skills/yss-implementation-contract-compiler/references/yss-skill-execution-result.md +14 -0
  172. package/template/.pi/skills/yss-product-lifecycle/SKILL.md +8 -8
  173. package/template/.pi/skills/yss-product-lifecycle/references/external-input-questionnaire.md +19 -0
  174. package/template/.pi/skills/yss-product-lifecycle/references/matt-yss-adapter.md +5 -5
  175. package/template/.pi/skills/yss-product-lifecycle/references/orchestration-contract.yaml +20 -4
  176. package/template/.pi/skills/yss-product-lifecycle/references/orchestration.md +2 -2
  177. package/template/.pi/skills/yss-product-lifecycle/references/plan-requirements.md +10 -0
  178. package/template/.pi/skills/yss-product-lifecycle/references/state-model.md +1 -1
  179. package/template/.pi/skills/yss-research/SKILL.md +4 -0
  180. package/template/.template-spec/agents/README.md +1 -1
  181. package/template/.template-spec/agents/digital-human-roles.yaml +1 -1
  182. package/template/.template-spec/agents/skill-migrations.md +15 -0
  183. package/template/.template-spec/agents/yss-skill-registry.yaml +10 -29
  184. package/template/.template-spec/architecture/README.md +3 -34
  185. package/template/.template-spec/plan/templates/competitive-analysis-template.md +2 -2
  186. package/template/.template-spec/process/contract-reading.md +24 -0
  187. package/template/.template-spec/process/lifecycle-registry-baseline.json +3 -1
  188. package/template/.template-spec/process/lifecycle-registry.yaml +6 -0
  189. package/template/.template-spec/process/research-completion.md +23 -0
  190. package/template/.template-spec/process/schemas/digital-human-task-package.schema.json +202 -12
  191. package/template/.template-spec/process/schemas/frontend-implementation-evidence.schema.json +7 -15
  192. package/template/.template-spec/process/subagent-collaboration.md +8 -0
  193. package/template/.template-spec/process/templates/frontend-implementation-verification-template.yaml +15 -1
  194. package/template/AGENTS.md +1 -1
  195. package/template/CONTEXT.md +5 -1
  196. package/template/README.md +12 -24
  197. package/template/scripts/contract +5 -5
  198. package/template/scripts/lib/contract-views.mjs +57 -2
  199. package/template/scripts/lib/execution-evidence.mjs +51 -0
  200. package/template/scripts/lib/harness-execution-scope.mjs +1 -1
  201. package/template/scripts/lib/implementation-contract-compiler.mjs +2 -0
  202. package/template/scripts/lib/lifecycle-context-query.mjs +15 -3
  203. package/template/scripts/lib/lifecycle-status.mjs +32 -6
  204. package/template/scripts/lib/lifecycle-transition.mjs +19 -1
  205. package/template/scripts/lib/maintenance-research.mjs +63 -0
  206. package/template/scripts/lib/read-only-intake.mjs +132 -0
  207. package/template/scripts/lib/skill-registry.mjs +2 -1
  208. package/template/scripts/lib/skill-supply-chain.mjs +4 -0
  209. package/template/scripts/lib/slice-task-package.mjs +1 -1
  210. package/template/scripts/lib/task-package.mjs +9 -2
  211. package/template/scripts/lifecycle-status +2 -2
  212. package/template/scripts/prepare-read-only-intake +16 -0
  213. package/template/scripts/run-read-only-intake +14 -0
  214. package/template/scripts/verify-digital-human-task-package +2 -2
  215. package/template/scripts/verify-frontend-implementation-evidence +24 -1
  216. package/template/scripts/verify-maintenance-research +13 -0
  217. package/template/skills-lock.json +19 -76
  218. package/template.manifest.json +118 -29
  219. package/template.snapshot.json +5 -6
  220. package/template/.agents/skills/grill-with-docs/SKILL.md +0 -20
  221. package/template/.agents/skills/grill-with-docs/agents/openai.yaml +0 -5
  222. package/template/.agents/skills/improve-codebase-architecture/agents/openai.yaml +0 -5
  223. package/template/.agents/skills/prototype/UI.md +0 -112
  224. package/template/.agents/skills/setup-matt-pocock-skills/domain.md +0 -37
  225. package/template/.agents/skills/to-questionnaire/SKILL.md +0 -55
  226. package/template/.agents/skills/to-questionnaire/agents/openai.yaml +0 -5
  227. package/template/.agents/skills/wait-what/SKILL.md +0 -7
  228. package/template/.agents/skills/wait-what/agents/openai.yaml +0 -5
  229. package/template/.codex/skills/data-analytics/.app.json +0 -84
  230. package/template/.codex/skills/data-analytics/.codex-plugin/plugin.json +0 -66
  231. package/template/.codex/skills/data-analytics/.mcp.json +0 -30
  232. package/template/.codex/skills/data-analytics/AGENTS.md +0 -20
  233. package/template/.codex/skills/data-analytics/DEPENDENCIES.MD +0 -27
  234. package/template/.codex/skills/data-analytics/README.md +0 -60
  235. package/template/.codex/skills/data-analytics/__yss_dotfile__.gitignore +0 -2
  236. package/template/.codex/skills/data-analytics/assets/datascience-artifact-widget.html +0 -16
  237. package/template/.codex/skills/data-analytics/assets/datascience-artifact-widget.html.gz.b64.part001 +0 -1
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  243. package/template/.codex/skills/data-analytics/assets/datascience-chart-widget.html +0 -16
  244. package/template/.codex/skills/data-analytics/assets/datascience-chart-widget.html.gz.b64.part001 +0 -1
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  251. package/template/.codex/skills/data-analytics/assets/datascience-small.svg +0 -5
  252. package/template/.codex/skills/data-analytics/assets/datascience-table-widget.html +0 -16
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  257. package/template/.codex/skills/data-analytics/assets/datascience.png +0 -0
  258. package/template/.codex/skills/data-analytics/assets/datascience.svg +0 -10
  259. package/template/.codex/skills/data-analytics/mcp/server.cjs +0 -2964
  260. package/template/.codex/skills/data-analytics/package-lock.json +0 -3048
  261. package/template/.codex/skills/data-analytics/package.json +0 -43
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@@ -0,0 +1,384 @@
1
+ #!/usr/bin/env node
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+ import { readFile, writeFile, mkdir, rm, readdir, lstat } from "node:fs/promises";
3
+ import path from "node:path";
4
+ import { fileURLToPath } from "node:url";
5
+ import { sha256, json, safePath, atomicWrite, digestFile, exists, loadManifest, validateManifest, checkPaths, ownership, sourceClosure, sourceSection, frontmatter, fail, args, cliError } from "./core.mjs";
6
+ import { observeSource, sameVersion } from "./sources.mjs";
7
+ import { extractLinks } from "./lint-wikilinks.mjs";
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+ const MANIFEST = ".wiki-manifest.json", JOURNAL = ".wiki-transaction.json", LOCK = ".wiki-lock";
9
+ const phases = ["prepared", "applied", "verified", "finalized", "aborted"];
10
+ function planDigest(plan) {
11
+ const { digest, ...body } = plan;
12
+ return sha256(JSON.stringify(body));
13
+ }
14
+ const authorized = (p, scope) => scope.some((s) => s.endsWith("/") ? p.startsWith(s) : s === p);
15
+ function stripLinks(text) {
16
+ return text.replace(/\[\[[^\]\n]+\]\]/g, "[[LINK]]");
17
+ }
18
+ async function getText(root, ref) {
19
+ const file = await safePath(root, ref);
20
+ try {
21
+ return await readFile(file, "utf8");
22
+ } catch (e) {
23
+ if (e.code === "ENOENT") return null;
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+ throw e;
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+ }
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+ }
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+ function validatePlan(p) {
28
+ if (p?.schemaVersion !== 1 || !/^[a-zA-Z0-9_-]+$/.test(p.id) || p.digest !== planDigest(p) || !Array.isArray(p.writes) || !p.inputs || p.authorization?.confirmed !== true || !Array.isArray(p.authorization.paths)) fail("PLAN_INVALID", "schema, digest or authorization");
29
+ if (!["init", "refresh", "rebuild", "ingest", "migrate", "feedback"].includes(p.operation)) fail("PLAN_INVALID", "operation");
30
+ if (new Set(p.writes.map((w) => w.path)).size !== p.writes.length) fail("PLAN_INVALID", "duplicate write");
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+ for (const w of p.writes) {
32
+ if (!authorized(w.path, p.authorization.paths) || typeof w.content !== "string" || !/^([a-f0-9]{64})$/.test(w.after) || sha256(w.content) !== w.after || !(w.before === null || /^[a-f0-9]{64}$/.test(w.before))) fail("PLAN_INVALID", w.path);
33
+ if ([LOCK, JOURNAL, ".wiki-runner-lock"].includes(w.path) || w.path.startsWith(".wiki-staging/")) fail("PLAN_INVALID", "reserved path");
34
+ }
35
+ }
36
+ async function createPlan({ wikiRoot, repoRoot = process.cwd(), request }) {
37
+ const { operation } = request;
38
+ if (!["init", "refresh", "rebuild", "ingest", "migrate", "feedback"].includes(operation)) fail("USAGE", "invalid operation");
39
+ if (request.authorization?.confirmed !== true || !Array.isArray(request.authorization.paths)) fail("AUTHORIZATION_REQUIRED", "a reviewed scope is required");
40
+ const priorText = await getText(wikiRoot, MANIFEST), prior = priorText ? await loadManifest(wikiRoot, { repoRoot }) : null;
41
+ if (operation === "init" && prior) fail("ALREADY_EXISTS", "init cannot overwrite a wiki");
42
+ if (operation !== "init" && !prior) fail("MANIFEST_MISSING", operation);
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+ if (prior?.schemaVersion === 1 && operation !== "migrate") fail("MIGRATION_REQUIRED", "v1 is read-only");
44
+ const manifest = structuredClone(request.manifest || prior);
45
+ if (manifest?.schemaVersion !== 2) fail("SCHEMA_UNSUPPORTED", "writes require v2");
46
+ const errors = validateManifest(manifest);
47
+ if (errors.length) fail("MANIFEST_INVALID", errors.join("\n"));
48
+ await checkPaths(manifest, { wikiRoot, repoRoot });
49
+ const proposed = new Map((request.writes || []).map((w) => [w.path, w.content]));
50
+ if (proposed.size !== (request.writes || []).length) fail("PLAN_INVALID", "duplicate writes");
51
+ const inputs = {}, writes = [];
52
+ const bind = async (kind, root, ref) => {
53
+ const p = await safePath(root, ref);
54
+ const digest = await digestFile(p);
55
+ inputs[`${kind}:${ref}`] = digest;
56
+ return p;
57
+ };
58
+ for (const ref of [MANIFEST, "wiki/index.md", "wiki/log.md", ...(prior?.sources || []).map((s) => s.rawPath), ...(prior?.articles || []).map((a) => a.file)].filter(Boolean)) await bind("wiki", wikiRoot, ref);
59
+ for (const s of [...prior?.sources || [], ...manifest.sources]) for (const ref of [s.livePath, ...s.extract?.inputs || []].filter(Boolean)) await bind("repo", repoRoot, ref);
60
+ const protectedPages = [], conflicts = [];
61
+ for (const a of manifest.articles) {
62
+ const old = prior?.articles.find((x) => x.id === a.id);
63
+ if (operation === "migrate") {
64
+ if (a.articleDigest !== null || Object.keys(a.compiledFrom || {}).length || a.verification) fail("MIGRATION_EVIDENCE_FORBIDDEN", a.id);
65
+ } else for (const field of ["articleDigest", "compiledFrom", "compiledDependencies", "verification"]) {
66
+ const expected = old?.[field] ?? (field === "compiledFrom" || field === "compiledDependencies" ? {} : null);
67
+ if (JSON.stringify(a[field] ?? expected) !== JSON.stringify(expected)) fail("COMPILE_RECORD_PROTECTED", `${a.id}.${field}`);
68
+ }
69
+ }
70
+ for (const a of prior?.articles || []) {
71
+ const text = await getText(wikiRoot, a.file);
72
+ if (text === null) continue;
73
+ const own = ownership(a, text);
74
+ if (own.protected) protectedPages.push(a.id);
75
+ if (own.conflict) conflicts.push({ code: "OWNERSHIP_CONFLICT", articleId: a.id });
76
+ const next = manifest.articles.find((x) => x.id === a.id);
77
+ if (!next) fail("ARTICLE_REMOVAL_FORBIDDEN", a.id);
78
+ if (own.protected && next.humanOwned !== true) fail("HUMAN_OWNED", `${a.id}: preserve ownership`);
79
+ if (proposed.has(a.file) && proposed.get(a.file) !== text && own.protected) {
80
+ if (!request.linkRepairs?.includes(a.id) || stripLinks(text) !== stripLinks(proposed.get(a.file))) fail("HUMAN_OWNED", a.id);
81
+ }
82
+ }
83
+ for (const s of prior?.sources || []) if (!manifest.sources.some((x) => x.id === s.id)) fail("SOURCE_REMOVAL_FORBIDDEN", `retain tombstone and snapshot: ${s.id}`);
84
+ for (const [ref, content] of proposed) {
85
+ await safePath(wikiRoot, ref, { write: true });
86
+ if ([MANIFEST, "wiki/log.md", LOCK, JOURNAL].includes(ref) || ref.startsWith(".wiki-staging/")) fail("PLAN_INVALID", `reserved ${ref}`);
87
+ if (typeof content !== "string") fail("PLAN_INVALID", "deletion or non-text content");
88
+ const isKnown = manifest.articles.some((a) => a.file === ref) || manifest.sources.some((s) => s.rawPath === ref) || ["wiki/index.md", "wiki/CLAUDE.md", "wiki/AGENTS.md", "wiki/concept-table.md"].includes(ref) || operation === "migrate" && ref.startsWith(".wiki-backups/");
89
+ if (!isKnown) fail("WRITE_SCOPE", ref);
90
+ await bind("wiki", wikiRoot, ref);
91
+ }
92
+ const reader = async (file) => {
93
+ const rel = path.relative(path.resolve(wikiRoot), file).split(path.sep).join("/");
94
+ if (proposed.has(rel)) return Buffer.from(proposed.get(rel));
95
+ return readFile(file);
96
+ };
97
+ const observed = [];
98
+ for (const s of manifest.sources) {
99
+ const o = await observeSource(s, { wikiRoot, repoRoot, reader });
100
+ observed.push(o);
101
+ if (o.state === "missing" && o.missing.length) {
102
+ s.deletion = { observedAt: request.at || (/* @__PURE__ */ new Date()).toISOString(), paths: o.missing, lastEffectiveDigest: s.effectiveDigest };
103
+ continue;
104
+ }
105
+ if (operation === "migrate") continue;
106
+ if (s.kind === "derived" && s.extract?.kind === "prose-note" && proposed.has(s.rawPath)) {
107
+ if (JSON.stringify(s.extract.inputDigests) !== JSON.stringify(o.inputDigests)) fail("EXTRACT_INPUT_MISMATCH", s.id);
108
+ }
109
+ if (o.effectiveDigest && (!s.rawPath || o.effectiveDigest === o.rawDigest)) {
110
+ s.originalDigest = o.originalDigest;
111
+ s.effectiveDigest = o.effectiveDigest;
112
+ s.rawDigest = o.rawDigest;
113
+ s.sha256 = o.originalDigest;
114
+ } else if (!s.livePath && s.kind === "document" && o.rawDigest) {
115
+ s.originalDigest = o.rawDigest;
116
+ s.effectiveDigest = o.rawDigest;
117
+ s.rawDigest = o.rawDigest;
118
+ }
119
+ }
120
+ const bySource = new Map(observed.map((o) => [o.id, o]));
121
+ const compiled = /* @__PURE__ */ new Set();
122
+ for (const c of request.compilations || []) {
123
+ if (compiled.has(c.articleId)) fail("COMPILE_INVALID", "duplicate article");
124
+ compiled.add(c.articleId);
125
+ const a = manifest.articles.find((a2) => a2.id === c.articleId);
126
+ if (!a) fail("UNKNOWN_ARTICLE_ID", c.articleId);
127
+ const content = proposed.get(a.file) ?? await getText(wikiRoot, a.file);
128
+ if (content === null) fail("COMPILE_INVALID", "missing article");
129
+ const own = ownership(a, content);
130
+ if (own.conflict) fail("OWNERSHIP_CONFLICT", a.id);
131
+ // Ownership protects content. Evidence can be renewed for unchanged content;
132
+ // all proposed changes have already passed the link-only protection above.
133
+ const ids = sourceClosure(manifest, a.id);
134
+ if (JSON.stringify(Object.keys(c.consumed || {}).sort()) !== JSON.stringify(ids)) fail("COMPILE_INVALID", "consumed closure mismatch");
135
+ if (!Array.isArray(c.evidence) || !c.evidence.length) fail("EVIDENCE_REQUIRED", a.id);
136
+ for (const id2 of ids) {
137
+ const o = bySource.get(id2);
138
+ if (!o.effectiveDigest || !sameVersion(c.consumed[id2], o.version)) fail("COMPILE_INPUT_CHANGED", id2);
139
+ if (!c.evidence.some((e) => e.sourceId === id2)) fail("EVIDENCE_REQUIRED", id2);
140
+ }
141
+ for (const e of c.evidence) {
142
+ const s = manifest.sources.find((s2) => s2.id === e.sourceId);
143
+ if (!ids.includes(e.sourceId) || !e.claim || !["general", "critical"].includes(e.risk) || ![s?.livePath, ...s?.extract?.inputs || []].filter(Boolean).includes(e.inputPath)) fail("EVIDENCE_INVALID", a.id);
144
+ const input = await readFile(await bind("repo", repoRoot, e.inputPath), "utf8"), lines = input.split("\n");
145
+ if (!Number.isInteger(e.startLine) || !Number.isInteger(e.endLine) || e.startLine < 1 || e.endLine < e.startLine || e.endLine > lines.length || sha256(lines.slice(e.startLine - 1, e.endLine).join("\n")) !== e.excerptDigest) fail("EVIDENCE_INVALID", e.inputPath);
146
+ }
147
+ a.articleDigest = sha256(content);
148
+ a.compiledFrom = structuredClone(c.consumed);
149
+ a.compiledDependencies = Object.fromEntries((a.dependsOnArticles || []).map((id2) => {
150
+ const dep = manifest.articles.find((x) => x.id === id2);
151
+ const bytes = proposed.get(dep.file);
152
+ return [id2, bytes === void 0 ? null : sha256(bytes)];
153
+ }));
154
+ for (const id2 of a.dependsOnArticles || []) if (a.compiledDependencies[id2] === null) a.compiledDependencies[id2] = sha256(await getText(wikiRoot, manifest.articles.find((x) => x.id === id2).file));
155
+ a.verification = { articleDigest: a.articleDigest, checkedAt: request.at || (/* @__PURE__ */ new Date()).toISOString(), evidence: c.evidence };
156
+ delete a.status;
157
+ }
158
+ for (const a of manifest.articles) {
159
+ const content = proposed.get(a.file) ?? await getText(wikiRoot, a.file);
160
+ if (content === null) fail("ARTICLE_MISSING", a.id);
161
+ frontmatter(content);
162
+ if (ownership(a, content).conflict) fail("OWNERSHIP_CONFLICT", a.id);
163
+ if (!sourceSection(content)) fail("SOURCE_SECTION_EMPTY", a.id);
164
+ if (content.match(/^#\s+(.+)$/m)?.[1] !== a.id) fail("H1_MISMATCH", a.id);
165
+ for (const id2 of extractLinks(content).ids) if (!manifest.articles.some((x) => x.id === id2)) fail("WIKILINK_MISSING", id2);
166
+ if (extractLinks(content).invalid.length) fail("WIKILINK_INVALID", a.id);
167
+ }
168
+ if (await exists(await safePath(wikiRoot, "wiki"))) {
169
+ for (const file of await readdir(await safePath(wikiRoot, "wiki"))) if (file.endsWith(".md") && !["index.md", "log.md", "claude.md", "agents.md", "soul.md", "concept-table.md"].includes(file.toLowerCase()) && !manifest.articles.some((a) => a.file === `wiki/${file}`)) fail("UNLISTED_ARTICLE", file);
170
+ }
171
+ const index = proposed.get("wiki/index.md") ?? await getText(wikiRoot, "wiki/index.md");
172
+ if (index === null) fail("INDEX_MISSING", "wiki/index.md");
173
+ const indexed = extractLinks(index);
174
+ if (indexed.invalid.length || indexed.ids.some((id2) => !manifest.articles.some((a) => a.id === id2)) || manifest.articles.some((a) => !indexed.ids.includes(a.id))) fail("INDEX_INVALID", "article closure");
175
+ const finalErrors = validateManifest(manifest);
176
+ if (finalErrors.length) fail("MANIFEST_INVALID", finalErrors.join("\n"));
177
+ proposed.set(MANIFEST, json(manifest));
178
+ const id = request.id || sha256(JSON.stringify({ operation, inputs, proposed: [...proposed] })).slice(0, 24);
179
+ if (!/^[a-zA-Z0-9_-]+$/.test(id)) fail("PLAN_INVALID", "id");
180
+ const priorLog = await getText(wikiRoot, "wiki/log.md") || "# log\n";
181
+ proposed.set("wiki/log.md", `${priorLog.trimEnd()}
182
+
183
+ ## [${(request.at || (/* @__PURE__ */ new Date()).toISOString()).slice(0, 10)}] ${operation.toUpperCase()} | ${id}
184
+
185
+ - Changed articles: ${[...compiled].join(", ") || "none"}
186
+ - Remaining freshness must be read from status.
187
+ `);
188
+ for (const [ref, content] of proposed) {
189
+ const old = await getText(wikiRoot, ref);
190
+ if (old === content) continue;
191
+ await bind("wiki", wikiRoot, ref);
192
+ writes.push({ path: ref, before: old === null ? null : sha256(old), after: sha256(content), content, original: old });
193
+ }
194
+ writes.sort((a, b) => {
195
+ const rank = (w) => w.path === MANIFEST ? 1 : w.path === "wiki/log.md" ? 2 : 0;
196
+ return rank(a) - rank(b) || a.path.localeCompare(b.path);
197
+ });
198
+ const plan = { schemaVersion: 1, id, operation, inputs, writes, summary: { sources: observed.map(({ id: id2, state, reason }) => ({ id: id2, state, reason })), articles: manifest.articles.filter((a) => writes.some((w) => w.path === a.file)).map((a) => a.id), protected: protectedPages, conflicts }, authorization: request.authorization };
199
+ plan.digest = planDigest(plan);
200
+ validatePlan(plan);
201
+ return plan;
202
+ }
203
+ async function verifyInputs(plan, options, { during = false } = {}) {
204
+ for (const [key, expected] of Object.entries(plan.inputs)) {
205
+ const colon = key.indexOf(":"), kind = key.slice(0, colon), ref = key.slice(colon + 1);
206
+ if (!["repo", "wiki"].includes(kind)) fail("PLAN_INVALID", key);
207
+ const p = await safePath(kind === "wiki" ? options.wikiRoot : options.repoRoot, ref, { write: kind === "wiki" }), actual = await digestFile(p);
208
+ const w = kind === "wiki" ? plan.writes.find((w2) => w2.path === ref) : null;
209
+ if (actual !== expected && !(during && w && actual === w.after)) fail("PLAN_STALE", key);
210
+ }
211
+ }
212
+ async function loadJournal(wikiRoot) {
213
+ const j = JSON.parse(await readFile(await safePath(wikiRoot, JOURNAL), "utf8"));
214
+ if (j.schemaVersion !== 1 || !phases.includes(j.phase) || j.id !== j.plan?.id || !Array.isArray(j.applied)) fail("JOURNAL_INVALID", "invalid journal");
215
+ validatePlan(j.plan);
216
+ return j;
217
+ }
218
+ async function saveJournal(wikiRoot, j) {
219
+ await atomicWrite(await safePath(wikiRoot, JOURNAL, { write: true }), json(j));
220
+ }
221
+ async function assertLock(wikiRoot, id) {
222
+ const lock = JSON.parse(await readFile(await safePath(wikiRoot, LOCK), "utf8"));
223
+ if (lock.id !== id) fail("LOCK_CONFLICT", "another writer owns the lock");
224
+ }
225
+ async function acquire(wikiRoot, id) {
226
+ await mkdir(wikiRoot, { recursive: true });
227
+ try {
228
+ await writeFile(await safePath(wikiRoot, LOCK, { write: true }), json({ id }), { flag: "wx" });
229
+ } catch (e) {
230
+ if (e.code === "EEXIST") fail("LOCKED", "explicit resume/abort; never steal a lock");
231
+ throw e;
232
+ }
233
+ }
234
+ async function stage(wikiRoot, plan) {
235
+ for (const [i, w] of plan.writes.entries()) {
236
+ await atomicWrite(await safePath(wikiRoot, `.wiki-staging/${plan.id}/${i}.txt`, { write: true }), w.content);
237
+ }
238
+ }
239
+ async function install(options, j, w, index) {
240
+ const target = await safePath(options.wikiRoot, w.path, { write: true });
241
+ const actual = await digestFile(target);
242
+ if (actual !== w.before && actual !== w.after) fail("MANUAL_MODIFICATION", w.path);
243
+ if (actual !== w.after) {
244
+ const content = await readFile(await safePath(options.wikiRoot, `.wiki-staging/${j.id}/${index}.txt`));
245
+ if (sha256(content) !== w.after) fail("STAGING_CHANGED", w.path);
246
+ await atomicWrite(target, content);
247
+ }
248
+ if (!j.applied.includes(w.path)) j.applied.push(w.path);
249
+ await saveJournal(options.wikiRoot, j);
250
+ }
251
+ async function applyPlan({ wikiRoot, repoRoot = process.cwd(), plan, stopAfter }) {
252
+ validatePlan(plan);
253
+ const options = { wikiRoot, repoRoot };
254
+ const completed = await getText(wikiRoot, `.wiki-staging/${plan.id}/completed.json`);
255
+ if (completed) {
256
+ const done = JSON.parse(completed);
257
+ if (done.digest !== plan.digest) fail("PLAN_ID_CONFLICT", plan.id);
258
+ return { id: plan.id, phase: "finalized", replayed: true };
259
+ }
260
+ const previous = await getText(wikiRoot, JOURNAL);
261
+ if (previous) {
262
+ const j2 = await loadJournal(wikiRoot);
263
+ if (j2.id === plan.id && j2.plan.digest === plan.digest) {
264
+ if (j2.phase === "finalized") {
265
+ for (const w of j2.plan.writes) if (await digestFile(await safePath(wikiRoot, w.path)) !== w.after) fail("MANUAL_MODIFICATION", w.path);
266
+ return { id: j2.id, phase: "finalized", replayed: true };
267
+ }
268
+ fail("TRANSACTION_INCOMPLETE", "use explicit resume");
269
+ }
270
+ if (!["finalized", "aborted"].includes(j2.phase)) fail("TRANSACTION_INCOMPLETE", j2.id);
271
+ }
272
+ await verifyInputs(plan, options);
273
+ await acquire(wikiRoot, plan.id);
274
+ const j = { schemaVersion: 1, id: plan.id, phase: "prepared", plan, applied: [] };
275
+ await saveJournal(wikiRoot, j);
276
+ await stage(wikiRoot, plan);
277
+ if (stopAfter === "prepared") return { id: j.id, phase: j.phase };
278
+ return resumeTransaction({ ...options, stopAfter });
279
+ }
280
+ async function resumeInternal({ wikiRoot, repoRoot = process.cwd(), stopAfter }) {
281
+ const j = await loadJournal(wikiRoot);
282
+ const options = { wikiRoot, repoRoot };
283
+ if (["finalized", "aborted"].includes(j.phase)) {
284
+ if (await exists(await safePath(wikiRoot, LOCK))) {
285
+ await assertLock(wikiRoot, j.id);
286
+ await rm(await safePath(wikiRoot, LOCK, { write: true }));
287
+ }
288
+ return { id: j.id, phase: j.phase, replayed: true };
289
+ }
290
+ await assertLock(wikiRoot, j.id);
291
+ await verifyInputs(j.plan, options, { during: true });
292
+ for (const [i, w] of j.plan.writes.entries()) {
293
+ const p = await safePath(wikiRoot, `.wiki-staging/${j.id}/${i}.txt`, { write: true });
294
+ if (!await exists(p)) await atomicWrite(p, w.content);
295
+ }
296
+ if (j.phase === "prepared") {
297
+ for (const [i, w] of j.plan.writes.entries()) if (![MANIFEST, "wiki/log.md"].includes(w.path)) await install(options, j, w, i);
298
+ j.phase = "applied";
299
+ await saveJournal(wikiRoot, j);
300
+ if (stopAfter === "applied") return { id: j.id, phase: j.phase };
301
+ }
302
+ if (j.phase === "applied") {
303
+ for (const w of j.plan.writes.filter((w2) => ![MANIFEST, "wiki/log.md"].includes(w2.path))) if (await digestFile(await safePath(wikiRoot, w.path)) !== w.after) fail("VERIFY_FAILED", w.path);
304
+ const candidate = j.plan.writes.find((w) => w.path === MANIFEST);
305
+ if (candidate) {
306
+ const errors = validateManifest(JSON.parse(candidate.content));
307
+ if (errors.length) fail("VERIFY_FAILED", errors.join("\n"));
308
+ }
309
+ j.phase = "verified";
310
+ await saveJournal(wikiRoot, j);
311
+ if (stopAfter === "verified") return { id: j.id, phase: j.phase };
312
+ }
313
+ await verifyInputs(j.plan, options, { during: true });
314
+ for (const [i, w] of j.plan.writes.entries()) if ([MANIFEST, "wiki/log.md"].includes(w.path)) {
315
+ await install(options, j, w, i);
316
+ if (stopAfter === w.path) return { id: j.id, phase: j.phase };
317
+ }
318
+ await atomicWrite(await safePath(wikiRoot, `.wiki-staging/${j.id}/completed.json`, { write: true }), json({ id: j.id, digest: j.plan.digest, phase: "finalized", writes: j.plan.writes.map(({ path: path2, before, after }) => ({ path: path2, before, after })) }));
319
+ j.phase = "finalized";
320
+ await saveJournal(wikiRoot, j);
321
+ await rm(await safePath(wikiRoot, LOCK, { write: true }));
322
+ return { id: j.id, phase: j.phase };
323
+ }
324
+ async function abortInternal({ wikiRoot }) {
325
+ const j = await loadJournal(wikiRoot);
326
+ if (j.phase === "aborted") return { id: j.id, phase: j.phase, replayed: true };
327
+ if (j.phase === "finalized") fail("TRANSACTION_FINALIZED", "cannot abort published transaction");
328
+ await assertLock(wikiRoot, j.id);
329
+ for (const w of j.plan.writes) {
330
+ const digest = await digestFile(await safePath(wikiRoot, w.path, { write: true }));
331
+ if (digest !== w.before && digest !== w.after) fail("MANUAL_MODIFICATION", w.path);
332
+ if (w.before !== null && (typeof w.original !== "string" || sha256(w.original) !== w.before)) fail("BACKUP_INVALID", w.path);
333
+ }
334
+ for (const w of [...j.plan.writes].reverse()) {
335
+ const p = await safePath(wikiRoot, w.path, { write: true });
336
+ if (await digestFile(p) === w.after) {
337
+ if (w.before === null) await rm(p);
338
+ else await atomicWrite(p, w.original);
339
+ }
340
+ }
341
+ j.phase = "aborted";
342
+ await saveJournal(wikiRoot, j);
343
+ await rm(await safePath(wikiRoot, LOCK, { write: true }));
344
+ return { id: j.id, phase: j.phase };
345
+ }
346
+ async function exclusive(options, run) {
347
+ const file = await safePath(options.wikiRoot, ".wiki-runner-lock", { write: true });
348
+ try {
349
+ await writeFile(file, json({ pid: process.pid }), { flag: "wx" });
350
+ } catch (e) {
351
+ if (e.code === "EEXIST") fail("LOCKED", "runner lock retained; inspect interrupted process before explicit removal");
352
+ throw e;
353
+ }
354
+ try {
355
+ return await run(options);
356
+ } finally {
357
+ await rm(file);
358
+ }
359
+ }
360
+ const resumeTransaction = (options) => exclusive(options, resumeInternal);
361
+ const abortTransaction = (options) => exclusive(options, abortInternal);
362
+ async function main() {
363
+ const a = args(process.argv.slice(2), ["plan", "apply", "resume", "abort"]);
364
+ if (!a.wiki) fail("USAGE", "--wiki required");
365
+ const options = { wikiRoot: path.resolve(a.repo, a.wiki), repoRoot: path.resolve(a.repo) };
366
+ let result;
367
+ if (a.command === "plan") {
368
+ if (!a.request) fail("USAGE", "--request required");
369
+ result = await createPlan({ ...options, request: JSON.parse(await readFile(a.request, "utf8")) });
370
+ } else if (a.command === "apply") {
371
+ if (!a.plan) fail("USAGE", "--plan required");
372
+ result = await applyPlan({ ...options, plan: JSON.parse(await readFile(a.plan, "utf8")) });
373
+ } else if (a.command === "resume") result = await resumeTransaction(options);
374
+ else result = await abortTransaction(options);
375
+ process.stdout.write(json(result));
376
+ }
377
+ if (process.argv[1] === fileURLToPath(import.meta.url)) main().catch(cliError);
378
+ export {
379
+ abortTransaction,
380
+ applyPlan,
381
+ createPlan,
382
+ planDigest,
383
+ resumeTransaction
384
+ };