cotx-engine 0.1.0

package/dist/mcp/tools.js.map

@@ -0,0 +1 @@
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package/dist/query/bm25.d.ts

@@ -0,0 +1,19 @@
+export interface BM25Document {
+    id: string;
+    text: string;
+}
+export interface BM25Result {
+    id: string;
+    score: number;
+}
+export declare class BM25Index {
+    private docs;
+    private df;
+    private avgdl;
+    private N;
+    private k1;
+    private b;
+    constructor(documents: BM25Document[]);
+    search(query: string, limit?: number, minScore?: number): BM25Result[];
+    private tokenize;
+}

package/dist/query/bm25.js

@@ -0,0 +1,60 @@
+export class BM25Index {
+    docs;
+    df; // document frequency per term
+    avgdl;
+    N;
+    k1 = 1.5;
+    b = 0.75;
+    constructor(documents) {
+        this.docs = new Map();
+        this.df = new Map();
+        this.N = documents.length;
+        let totalLength = 0;
+        for (const doc of documents) {
+            const terms = this.tokenize(doc.text);
+            const termFreq = new Map();
+            for (const term of terms) {
+                termFreq.set(term, (termFreq.get(term) ?? 0) + 1);
+            }
+            this.docs.set(doc.id, { terms: termFreq, length: terms.length });
+            totalLength += terms.length;
+            // Update document frequency
+            for (const term of termFreq.keys()) {
+                this.df.set(term, (this.df.get(term) ?? 0) + 1);
+            }
+        }
+        this.avgdl = this.N > 0 ? totalLength / this.N : 0;
+    }
+    search(query, limit = 20, minScore = 0) {
+        const queryTerms = this.tokenize(query);
+        if (queryTerms.length === 0)
+            return [];
+        const results = [];
+        for (const [id, doc] of this.docs) {
+            let score = 0;
+            for (const qt of queryTerms) {
+                const tf = doc.terms.get(qt) ?? 0;
+                if (tf === 0)
+                    continue;
+                const n = this.df.get(qt) ?? 0;
+                const idf = Math.log((this.N - n + 0.5) / (n + 0.5) + 1);
+                const tfNorm = (tf * (this.k1 + 1)) /
+                    (tf + this.k1 * (1 - this.b + (this.b * doc.length) / this.avgdl));
+                score += idf * tfNorm;
+            }
+            if (score >= minScore && score > 0) {
+                results.push({ id, score });
+            }
+        }
+        results.sort((a, b) => b.score - a.score);
+        return results.slice(0, limit);
+    }
+    tokenize(text) {
+        return text
+            .toLowerCase()
+            .replace(/[^a-z0-9\u4e00-\u9fff]+/g, ' ') // keep CJK chars
+            .split(/\s+/)
+            .filter((t) => t.length > 1);
+    }
+}
+//# sourceMappingURL=bm25.js.map

package/dist/query/bm25.js.map

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package/dist/query/graph-index.d.ts

@@ -0,0 +1,40 @@
+import type { ModuleNode, ConceptNode, ContractNode, FlowNode, ConcernNode } from '../store/schema.js';
+import type { CotxStore } from '../store/store.js';
+export interface CotxGraphNode {
+    id: string;
+    layer: 'module' | 'concept' | 'contract' | 'flow' | 'concern';
+    data: ModuleNode | ConceptNode | ContractNode | FlowNode | ConcernNode;
+}
+export interface CotxGraphEdge {
+    from: string;
+    to: string;
+    relation: string;
+}
+export declare class CotxGraph {
+    private nodes;
+    private outEdges;
+    private inEdges;
+    private bm25Index;
+    constructor();
+    private addNode;
+    private addEdge;
+    private static cachedGraph;
+    private static cachedTimestamp;
+    static invalidateCache(): void;
+    static fromStoreCached(store: CotxStore): CotxGraph;
+    static fromStore(store: CotxStore): CotxGraph;
+    findNode(id: string): CotxGraphNode | undefined;
+    allNodes(layer?: string): CotxGraphNode[];
+    neighbors(id: string, direction: 'out' | 'in' | 'both'): CotxGraphEdge[];
+    /**
+     * Breadth-first traversal from startId.
+     * Returns a map of depth → nodeIds[] (startId is NOT included in the result).
+     */
+    bfs(startId: string, direction: 'out' | 'in', maxDepth: number): Map<number, string[]>;
+    private buildBM25Index;
+    /**
+     * BM25-ranked full-text search across all string fields in node.data.
+     * Supports multi-term queries. Optionally filter by layer.
+     */
+    search(keyword: string, layer?: string, minScore?: number): CotxGraphNode[];
+}

package/dist/query/graph-index.js

@@ -0,0 +1,178 @@
+import { BM25Index } from './bm25.js';
+export class CotxGraph {
+    nodes;
+    outEdges; // from → edges
+    inEdges; // to → edges
+    bm25Index = null;
+    constructor() {
+        this.nodes = new Map();
+        this.outEdges = new Map();
+        this.inEdges = new Map();
+    }
+    // ── Builder helpers ────────────────────────────────────────────────────────
+    addNode(node) {
+        this.nodes.set(node.id, node);
+    }
+    addEdge(edge) {
+        // Skip self-edges and edges with missing endpoints
+        if (!edge.from || !edge.to || edge.from === edge.to)
+            return;
+        const out = this.outEdges.get(edge.from) ?? [];
+        out.push(edge);
+        this.outEdges.set(edge.from, out);
+        const inArr = this.inEdges.get(edge.to) ?? [];
+        inArr.push(edge);
+        this.inEdges.set(edge.to, inArr);
+    }
+    // ── Cached factory (for MCP server — avoid per-call YAML reload) ────────
+    static cachedGraph = null;
+    static cachedTimestamp = '';
+    static invalidateCache() {
+        this.cachedGraph = null;
+        this.cachedTimestamp = '';
+    }
+    static fromStoreCached(store) {
+        const meta = store.readMeta();
+        if (this.cachedGraph && this.cachedTimestamp === meta.compiled_at) {
+            return this.cachedGraph;
+        }
+        const graph = this.fromStore(store);
+        this.cachedGraph = graph;
+        this.cachedTimestamp = meta.compiled_at;
+        return graph;
+    }
+    // ── Factory ────────────────────────────────────────────────────────────────
+    static fromStore(store) {
+        const graph = new CotxGraph();
+        // Load modules
+        for (const id of store.listModules()) {
+            const mod = store.readModule(id);
+            graph.addNode({ id, layer: 'module', data: mod });
+            for (const dep of mod.depends_on ?? []) {
+                graph.addEdge({ from: id, to: dep, relation: 'depends_on' });
+            }
+        }
+        // Load concepts
+        for (const id of store.listConcepts()) {
+            const concept = store.readConcept(id);
+            graph.addNode({ id, layer: 'concept', data: concept });
+            if (concept.layer) {
+                graph.addEdge({ from: concept.layer, to: id, relation: 'owns_concept' });
+            }
+        }
+        // Load contracts
+        for (const id of store.listContracts()) {
+            const contract = store.readContract(id);
+            graph.addNode({ id, layer: 'contract', data: contract });
+            graph.addEdge({ from: contract.consumer, to: contract.provider, relation: 'contract' });
+        }
+        // Load flows
+        for (const id of store.listFlows()) {
+            const flow = store.readFlow(id);
+            graph.addNode({ id, layer: 'flow', data: flow });
+            if (flow.steps) {
+                for (const step of flow.steps) {
+                    graph.addEdge({ from: id, to: step.module, relation: 'step_in_flow' });
+                }
+            }
+        }
+        // Load concerns
+        for (const id of store.listConcerns()) {
+            const concern = store.readConcern(id);
+            graph.addNode({ id, layer: 'concern', data: concern });
+            for (const mod of concern.affected_modules ?? []) {
+                graph.addEdge({ from: id, to: mod, relation: 'affects' });
+            }
+        }
+        return graph;
+    }
+    // ── Basic lookups ──────────────────────────────────────────────────────────
+    findNode(id) {
+        return this.nodes.get(id);
+    }
+    allNodes(layer) {
+        const all = Array.from(this.nodes.values());
+        if (layer === undefined)
+            return all;
+        return all.filter((n) => n.layer === layer);
+    }
+    // ── Relationship queries ───────────────────────────────────────────────────
+    neighbors(id, direction) {
+        const out = direction === 'in' ? [] : (this.outEdges.get(id) ?? []);
+        const inArr = direction === 'out' ? [] : (this.inEdges.get(id) ?? []);
+        return [...out, ...inArr];
+    }
+    // ── BFS traversal ─────────────────────────────────────────────────────────
+    /**
+     * Breadth-first traversal from startId.
+     * Returns a map of depth → nodeIds[] (startId is NOT included in the result).
+     */
+    bfs(startId, direction, maxDepth) {
+        const result = new Map();
+        const visited = new Set([startId]);
+        let frontier = [startId];
+        for (let depth = 1; depth <= maxDepth; depth++) {
+            const nextFrontier = [];
+            for (const nodeId of frontier) {
+                const edges = direction === 'out'
+                    ? (this.outEdges.get(nodeId) ?? [])
+                    : (this.inEdges.get(nodeId) ?? []);
+                for (const edge of edges) {
+                    const neighbor = direction === 'out' ? edge.to : edge.from;
+                    if (!visited.has(neighbor)) {
+                        visited.add(neighbor);
+                        nextFrontier.push(neighbor);
+                    }
+                }
+            }
+            if (nextFrontier.length > 0) {
+                result.set(depth, nextFrontier);
+            }
+            frontier = nextFrontier;
+            if (frontier.length === 0)
+                break;
+        }
+        return result;
+    }
+    // ── Keyword search ─────────────────────────────────────────────────────────
+    buildBM25Index() {
+        if (this.bm25Index)
+            return this.bm25Index;
+        const docs = [];
+        for (const [id, node] of this.nodes) {
+            const text = extractStrings(node.data).join(' ');
+            docs.push({ id, text });
+        }
+        this.bm25Index = new BM25Index(docs);
+        return this.bm25Index;
+    }
+    /**
+     * BM25-ranked full-text search across all string fields in node.data.
+     * Supports multi-term queries. Optionally filter by layer.
+     */
+    search(keyword, layer, minScore = 0) {
+        const index = this.buildBM25Index();
+        const results = index.search(keyword, 50, minScore);
+        return results
+            .map((r) => this.nodes.get(r.id))
+            .filter((n) => n !== undefined)
+            .filter((n) => !layer || n.layer === layer);
+    }
+}
+// ── Helpers ────────────────────────────────────────────────────────────────
+/**
+ * Recursively collect all string values from an object tree.
+ */
+function extractStrings(value) {
+    if (typeof value === 'string') {
+        return [value];
+    }
+    if (Array.isArray(value)) {
+        return value.flatMap((item) => extractStrings(item));
+    }
+    if (value !== null && typeof value === 'object') {
+        return Object.values(value).flatMap((v) => extractStrings(v));
+    }
+    return [];
+}
+//# sourceMappingURL=graph-index.js.map

package/dist/query/graph-index.js.map

@@ -0,0 +1 @@
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package/dist/store/derived-index.d.ts

@@ -0,0 +1,4 @@
+import type { CotxIndex } from './schema.js';
+import type { CotxStore } from './store.js';
+export declare function buildDerivedIndex(store: CotxStore): CotxIndex;
+export declare function rebuildDerivedIndex(store: CotxStore): void;

package/dist/store/derived-index.js

@@ -0,0 +1,68 @@
+export function buildDerivedIndex(store) {
+    const meta = store.readMeta();
+    const modules = store.listModules().map((id) => store.readModule(id));
+    const concepts = store.listConcepts().map((id) => store.readConcept(id));
+    const contracts = store.listContracts().map((id) => store.readContract(id));
+    const flows = store.listFlows().map((id) => store.readFlow(id));
+    const concerns = store.listConcerns().map((id) => store.readConcern(id));
+    return {
+        version: '1',
+        compiled_at: meta.compiled_at,
+        project: meta.project,
+        stats: meta.stats,
+        graph: {
+            nodes: [
+                ...modules.map((mod) => ({
+                    id: mod.id,
+                    layer: 'module',
+                    file: `modules/${store.safeFilename(mod.id)}.yaml`,
+                })),
+                ...concepts.map((concept) => ({
+                    id: concept.id,
+                    layer: 'concept',
+                    file: `concepts/${store.safeFilename(concept.id)}.yaml`,
+                })),
+                ...contracts.map((contract) => ({
+                    id: contract.id,
+                    layer: 'contract',
+                    file: `contracts/${store.safeFilename(contract.id)}.yaml`,
+                })),
+                ...flows.map((flow) => ({
+                    id: flow.id,
+                    layer: 'flow',
+                    file: `flows/${store.safeFilename(flow.id)}.yaml`,
+                })),
+                ...concerns.map((concern) => ({
+                    id: concern.id,
+                    layer: 'concern',
+                    file: `concerns/${store.safeFilename(concern.id)}.yaml`,
+                })),
+            ],
+            edges: [
+                ...modules.flatMap((mod) => (mod.depends_on ?? []).map((dep) => ({ from: mod.id, to: dep, relation: 'depends_on' }))),
+                ...concepts
+                    .filter((concept) => Boolean(concept.layer))
+                    .map((concept) => ({ from: concept.layer, to: concept.id, relation: 'owns_concept' })),
+                ...contracts.map((contract) => ({
+                    from: contract.consumer,
+                    to: contract.provider,
+                    relation: 'contract',
+                })),
+                ...flows.flatMap((flow) => (flow.steps ?? []).map((step) => ({
+                    from: flow.id,
+                    to: step.module,
+                    relation: 'step_in_flow',
+                }))),
+                ...concerns.flatMap((concern) => (concern.affected_modules ?? []).map((mod) => ({
+                    from: concern.id,
+                    to: mod,
+                    relation: 'affects',
+                }))),
+            ],
+        },
+    };
+}
+export function rebuildDerivedIndex(store) {
+    store.writeIndex(buildDerivedIndex(store));
+}
+//# sourceMappingURL=derived-index.js.map

package/dist/store/derived-index.js.map

@@ -0,0 +1 @@
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package/dist/store/meta.d.ts

@@ -0,0 +1 @@
+export type { CotxMeta } from './schema.js';

package/dist/store/meta.js

@@ -0,0 +1,3 @@
+export {};
+// Meta-specific helpers can be added here as the store evolves.
+//# sourceMappingURL=meta.js.map

package/dist/store/meta.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"meta.js","sourceRoot":"","sources":["../../src/store/meta.ts"],"names":[],"mappings":";AACA,gEAAgE"}

package/dist/store/schema.d.ts

@@ -0,0 +1,135 @@
+export interface Annotation {
+    author: 'human' | 'agent';
+    type: 'constraint' | 'intent' | 'concern' | 'question';
+    content: string;
+    date: string;
+    stale?: boolean;
+    stale_reason?: string;
+}
+export interface ModuleNode {
+    id: string;
+    canonical_entry: string;
+    files: string[];
+    depends_on: string[];
+    depended_by: string[];
+    struct_hash: string;
+    enriched?: {
+        responsibility?: string;
+        key_patterns?: string;
+        source_hash: string;
+        enriched_at: string;
+    };
+    annotations?: Annotation[];
+}
+export interface ConceptNode {
+    id: string;
+    aliases: string[];
+    appears_in: string[];
+    layer: string;
+    struct_hash: string;
+    enriched?: {
+        definition?: string;
+        distinguished_from?: Array<{
+            term: string;
+            difference: string;
+        }>;
+        source_hash: string;
+        enriched_at: string;
+    };
+    annotations?: Annotation[];
+}
+export interface ContractNode {
+    id: string;
+    provider: string;
+    consumer: string;
+    interface: string[];
+    struct_hash: string;
+    enriched?: {
+        guarantees?: string[];
+        invariants?: string[];
+        source_hash: string;
+        enriched_at: string;
+    };
+    annotations?: Annotation[];
+}
+export interface FlowStep {
+    module: string;
+    function: string;
+    action?: string;
+}
+export interface StateDefinition {
+    id: string;
+    source: string;
+}
+export interface StateTransition {
+    from: string;
+    to: string;
+    trigger: string;
+    source: string;
+}
+export interface FlowNode {
+    id: string;
+    type: 'flow' | 'state_machine';
+    trigger?: string;
+    steps?: FlowStep[];
+    owner_module?: string;
+    state_field?: string;
+    states?: StateDefinition[];
+    transitions?: StateTransition[];
+    struct_hash: string;
+    enriched?: {
+        error_paths?: Array<{
+            condition: string;
+            behavior: string;
+        }>;
+        guards?: Array<{
+            transition: string;
+            condition: string;
+        }>;
+        invariants?: string[];
+        source_hash: string;
+        enriched_at: string;
+    };
+    annotations?: Annotation[];
+}
+export interface ConcernNode {
+    id: string;
+    type: 'risk' | 'debt' | 'decision' | 'question';
+    severity: 'low' | 'medium' | 'high' | 'critical';
+    description: string;
+    affected_modules: string[];
+    affected_flows: string[];
+    author: 'human' | 'agent';
+    created: string;
+}
+export interface CotxMeta {
+    version: string;
+    project: string;
+    compiled_at: string;
+    module_resolution: 'coarse' | 'medium' | 'fine';
+    stats: {
+        concepts: number;
+        modules: number;
+        contracts: number;
+        flows: number;
+        concerns: number;
+    };
+}
+export interface CotxIndex {
+    version: string;
+    compiled_at: string;
+    project: string;
+    stats: CotxMeta['stats'];
+    graph: {
+        nodes: Array<{
+            id: string;
+            layer: string;
+            file: string;
+        }>;
+        edges: Array<{
+            from: string;
+            to: string;
+            relation: string;
+        }>;
+    };
+}

package/dist/store/schema.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=schema.js.map

package/dist/store/schema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"schema.js","sourceRoot":"","sources":["../../src/store/schema.ts"],"names":[],"mappings":""}

package/dist/store/store.d.ts

@@ -0,0 +1,49 @@
+import type { ModuleNode, ConceptNode, ContractNode, FlowNode, ConcernNode, CotxMeta, CotxIndex } from './schema.js';
+export type StoreLayerDir = 'modules' | 'concepts' | 'contracts' | 'flows' | 'concerns';
+export declare class CotxStore {
+    private readonly root;
+    private readonly cotxDir;
+    constructor(projectRoot: string);
+    init(projectName: string): void;
+    exists(): boolean;
+    readMeta(): CotxMeta;
+    private writeMeta;
+    updateMeta(updates: Partial<CotxMeta>): void;
+    /** Convert a node ID to a safe filename stem using URL encoding. */
+    private idToFilename;
+    /** Convert a safe filename stem back to a node ID. */
+    private filenameToId;
+    /** Public access to filename encoding for index generation. */
+    safeFilename(id: string): string;
+    decodeStoredId(filename: string): string;
+    nodeFilePath(layer: StoreLayerDir, id: string): string;
+    writeModule(mod: ModuleNode): void;
+    readModule(id: string): ModuleNode;
+    listModules(): string[];
+    writeConcept(concept: ConceptNode): void;
+    readConcept(id: string): ConceptNode;
+    listConcepts(): string[];
+    writeContract(contract: ContractNode): void;
+    readContract(id: string): ContractNode;
+    listContracts(): string[];
+    writeFlow(flow: FlowNode): void;
+    readFlow(id: string): FlowNode;
+    listFlows(): string[];
+    writeConcern(concern: ConcernNode): void;
+    readConcern(id: string): ConcernNode;
+    listConcerns(): string[];
+    /**
+     * Delete YAML files in a layer directory that are not in the valid ID set.
+     * Called after each compile phase to remove nodes that no longer exist.
+     */
+    pruneStale(layer: string, validIds: Set<string>): void;
+    writeGraphFile(filename: string, lines: string[]): void;
+    writeIndex(index: CotxIndex): void;
+    readIndex(): CotxIndex;
+    appendLog(entry: {
+        operation: string;
+        affected_nodes?: string[];
+        summary: string;
+    }): void;
+    private safeReadYaml;
+}