npm - copper3d - Versions diffs - 3.0.2 → 3.1.0 - Mend

copper3d 3.0.2 → 3.1.0

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Files changed (104) hide show

package/dist/Utils/segmentation/tools/DataLoader.js ADDED Viewed

@@ -0,0 +1,159 @@
+import { BaseTool } from "./BaseTool";
+import { MaskVolume, MASK_CHANNEL_COLORS } from "../core";
+import { SPHERE_CHANNEL_MAP, SPHERE_LABELS } from "./SphereTool";
+/**
+ * Handles data loading for NRRD slices and mask volumes.
+ *
+ * Extracted from NrrdTools.ts to reduce its size.
+ * Follows the same BaseTool + ToolContext + Callbacks pattern as other tools.
+ */
+export class DataLoader extends BaseTool {
+    constructor(ctx, callbacks) {
+        super(ctx);
+        this.callbacks = callbacks;
+    }
+    /****************************Slice Loading****************************************************/
+    /**
+     * Load all NRRD contrast slices and initialize MaskVolumes with real dimensions.
+     */
+    setAllSlices(allSlices) {
+        this.ctx.protectedData.allSlicesArray = [...allSlices];
+        const randomSlice = this.ctx.protectedData.allSlicesArray[0];
+        this.ctx.nrrd_states.image.nrrd_x_mm = randomSlice.z.canvas.width;
+        this.ctx.nrrd_states.image.nrrd_y_mm = randomSlice.z.canvas.height;
+        this.ctx.nrrd_states.image.nrrd_z_mm = randomSlice.x.canvas.width;
+        this.ctx.nrrd_states.image.nrrd_x_pixel = randomSlice.x.volume.dimensions[0];
+        this.ctx.nrrd_states.image.nrrd_y_pixel = randomSlice.x.volume.dimensions[1];
+        this.ctx.nrrd_states.image.nrrd_z_pixel = randomSlice.x.volume.dimensions[2];
+        this.ctx.nrrd_states.image.voxelSpacing = randomSlice.x.volume.spacing;
+        this.ctx.nrrd_states.image.ratios.x = randomSlice.x.volume.spacing[0];
+        this.ctx.nrrd_states.image.ratios.y = randomSlice.x.volume.spacing[1];
+        this.ctx.nrrd_states.image.ratios.z = randomSlice.x.volume.spacing[2];
+        this.ctx.nrrd_states.image.dimensions = randomSlice.x.volume.dimensions;
+        // Re-initialize MaskVolume with real NRRD dimensions.
+        // This replaces the 1×1×1 placeholders from CommToolsData constructor.
+        // Invalidate reusable buffer from previous dataset.
+        this.callbacks.invalidateSliceBuffer();
+        const [vw, vh, vd] = this.ctx.nrrd_states.image.dimensions;
+        this.ctx.protectedData.maskData.volumes = this.ctx.nrrd_states.image.layers.reduce((acc, id) => {
+            acc[id] = new MaskVolume(vw, vh, vd, 1);
+            return acc;
+        }, {});
+        // Create dedicated SphereMaskVolume for 3D sphere data.
+        // Separate from layer volumes to avoid polluting draw mask data.
+        // Cleared in reset() when switching cases.
+        this.ctx.nrrd_states.sphere.sphereMaskVolume = new MaskVolume(vw, vh, vd, 1);
+        // Derive sphere label colors from SPHERE_CHANNEL_MAP → MASK_CHANNEL_COLORS
+        // so that volume rendering matches the preview circle colors.
+        for (const [type, { channel }] of Object.entries(SPHERE_CHANNEL_MAP)) {
+            const label = SPHERE_LABELS[type];
+            const c = MASK_CHANNEL_COLORS[channel];
+            this.ctx.nrrd_states.sphere.sphereMaskVolume.setChannelColor(label, { r: c.r, g: c.g, b: c.b, a: c.a });
+        }
+        this.ctx.nrrd_states.image.spaceOrigin = randomSlice.x.volume.header.space_origin.map((item) => {
+            return item * 1;
+        });
+        this.ctx.protectedData.allSlicesArray.forEach((item, index) => {
+            item.x.contrastOrder = index;
+            item.y.contrastOrder = index;
+            item.z.contrastOrder = index;
+        });
+        // Phase 3: initPaintImages removed (MaskVolume initialized separately)
+        // this.initPaintImages(this.nrrd_states.image.dimensions);
+        // init displayslices array, the axis default is "z"
+        this.callbacks.setDisplaySlicesBaseOnAxis();
+        this.callbacks.afterLoadSlice();
+    }
+    /****************************Legacy Mask Loading****************************************************/
+    loadingMaskByLayer(masks, index, imageData) {
+        let imageDataLable = this.ctx.protectedData.ctxes.emptyCtx.createImageData(this.ctx.nrrd_states.image.nrrd_x_pixel, this.ctx.nrrd_states.image.nrrd_y_pixel);
+        this.callbacks.setEmptyCanvasSize();
+        for (let j = 0; j < masks[index].data.length; j++) {
+            imageDataLable.data[j] = masks[index].data[j];
+            imageData.data[j] += masks[index].data[j];
+        }
+        return imageDataLable;
+    }
+    // need to remove
+    setMasksData(masksData, loadingBar) {
+        if (!!masksData) {
+            this.ctx.nrrd_states.flags.loadingMaskData = true;
+            if (loadingBar) {
+                let { loadingContainer, progress } = loadingBar;
+                loadingContainer.style.display = "flex";
+                progress.innerText = "Loading masks data......";
+            }
+            this.callbacks.setEmptyCanvasSize();
+            const len = masksData["layer1"].length;
+            for (let i = 0; i < len; i++) {
+                let imageData = this.ctx.protectedData.ctxes.emptyCtx.createImageData(this.ctx.nrrd_states.image.nrrd_x_pixel, this.ctx.nrrd_states.image.nrrd_y_pixel);
+                if (masksData["layer1"][i].data.length > 0) {
+                    this.loadingMaskByLayer(masksData["layer1"], i, imageData);
+                }
+                if (masksData["layer2"][i].data.length > 0) {
+                    this.loadingMaskByLayer(masksData["layer2"], i, imageData);
+                }
+                if (masksData["layer3"][i].data.length > 0) {
+                    this.loadingMaskByLayer(masksData["layer3"], i, imageData);
+                }
+                this.callbacks.setEmptyCanvasSize();
+                this.ctx.protectedData.ctxes.emptyCtx.putImageData(imageData, 0, 0);
+                this.callbacks.syncLayerSliceData(i, "default");
+            }
+            this.ctx.nrrd_states.flags.loadingMaskData = false;
+            this.callbacks.resetZoom();
+            if (loadingBar) {
+                loadingBar.loadingContainer.style.display = "none";
+            }
+        }
+    }
+    /****************************NIfTI Mask Loading****************************************************/
+    /**
+     * Load raw voxel data into MaskVolume layers.
+     *
+     * Expects pre-extracted voxel bytes (e.g. from useNiftiVoxelData).
+     *
+     * @param layerVoxels Map of layer ID to raw voxel Uint8Array
+     *   Keys should be 'layer1', 'layer2', 'layer3'
+     * @param loadingBar Optional loading bar UI
+     */
+    setMasksFromNIfTI(layerVoxels, loadingBar) {
+        if (!layerVoxels || layerVoxels.size === 0)
+            return;
+        if (loadingBar) {
+            loadingBar.loadingContainer.style.display = "flex";
+            loadingBar.progress.innerText = "Loading mask layers from NIfTI...";
+        }
+        try {
+            for (const [layerId, rawData] of layerVoxels) {
+                const volume = this.ctx.protectedData.maskData.volumes[layerId];
+                if (!volume) {
+                    console.warn(`setMasksFromNIfTI: unknown layer "${layerId}", skipping`);
+                    continue;
+                }
+                const expectedLen = volume.getRawData().length;
+                // Ensure we copy exactly the right number of bytes
+                if (rawData.length >= expectedLen) {
+                    volume.setRawData(rawData.slice(0, expectedLen));
+                }
+                else {
+                    const padded = new Uint8Array(expectedLen);
+                    padded.set(rawData);
+                    volume.setRawData(padded);
+                }
+            }
+            // Reload the current slice from MaskVolume to canvas
+            this.callbacks.reloadMasksFromVolume();
+            this.callbacks.resetZoom();
+        }
+        catch (error) {
+            console.error("Error loading NIfTI masks:", error);
+        }
+        finally {
+            if (loadingBar) {
+                loadingBar.loadingContainer.style.display = "none";
+            }
+        }
+    }
+}
+//# sourceMappingURL=DataLoader.js.map

package/dist/Utils/segmentation/tools/DataLoader.js.map ADDED Viewed

@@ -0,0 +1 @@

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package/dist/Utils/segmentation/tools/DragSliceTool.d.ts CHANGED Viewed

@@ -10,17 +10,8 @@
  */
 import { BaseTool } from "./BaseTool";
 import type { ToolContext } from "./BaseTool";
-import type { ILayerRenderTarget } from "../coreTools/coreType";
-export interface DragSliceCallbacks {
-    setSyncsliceNum: () => void;
-    setIsDrawFalse: (target: number) => void;
-    flipDisplayImageByAxis: () => void;
-    setEmptyCanvasSize: (axis?: "x" | "y" | "z") => void;
-    getOrCreateSliceBuffer: (axis: "x" | "y" | "z") => ImageData | null;
-    renderSliceToCanvas: (layer: string, axis: "x" | "y" | "z", sliceIndex: number, buffer: ImageData, targetCtx: CanvasRenderingContext2D, scaledWidth: number, scaledHeight: number) => void;
-    /** Refresh sphere overlay from sphereMaskVolume after slice change. */
-    refreshSphereOverlay?: () => void;
-}
+import type { ILayerRenderTarget } from "../core/types";
+import type { DragSliceHostDeps } from "./ToolHost";
 interface IDragEffectCanvases {
     drawingCanvasLayerMaster: HTMLCanvasElement;
     displayCanvas: HTMLCanvasElement;
@@ -31,7 +22,7 @@ export declare class DragSliceTool extends BaseTool {
     private callbacks;
     private showDragNumberDiv;
     private dragEffectCanvases;
-    constructor(ctx: ToolContext, callbacks: DragSliceCallbacks, showDragNumberDiv: HTMLDivElement, dragEffectCanvases: IDragEffectCanvases);
+    constructor(ctx: ToolContext, callbacks: DragSliceHostDeps, showDragNumberDiv: HTMLDivElement, dragEffectCanvases: IDragEffectCanvases);
     setShowDragNumberDiv(div: HTMLDivElement): void;
     updateIndex(move: number): void;
     private drawDragSlice;

package/dist/Utils/segmentation/tools/DragSliceTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/Utils/segmentation/tools/DrawingTool.d.ts CHANGED Viewed

@@ -7,31 +7,7 @@
  */
 import { BaseTool } from "./BaseTool";
 import type { ToolContext } from "./BaseTool";
-import type { MaskDelta } from "../core";
-/**
- * Callbacks DrawingTool needs from its host (DrawToolCore).
- */
-export interface DrawingCallbacks {
-    /** Get current layer's canvas and 2D context */
-    setCurrentLayer: () => {
-        ctx: CanvasRenderingContext2D;
-        canvas: HTMLCanvasElement;
-    };
-    /** Composite all layers to master canvas */
-    compositeAllLayers: () => void;
-    /** Sync layer slice data to MaskVolume */
-    syncLayerSliceData: (index: number, layer: string) => void;
-    /** Get stored image data for previous image redraw */
-    filterDrawedImage: (axis: "x" | "y" | "z", index: number) => {
-        image: ImageData;
-    } | undefined;
-    /** Get MaskVolume for a layer (undo snapshots) */
-    getVolumeForLayer: (layer: string) => any;
-    /** Push delta to UndoManager */
-    pushUndoDelta: (delta: MaskDelta) => void;
-    /** Get eraser icon URLs */
-    getEraserUrls: () => string[];
-}
+import type { DrawingHostDeps } from "./ToolHost";
 export declare class DrawingTool extends BaseTool {
     /** Left mouse button currently held (draw mode) */
     private leftClicked;
@@ -46,7 +22,7 @@ export declare class DrawingTool extends BaseTool {
     private preDrawAxis;
     private preDrawSliceIndex;
     private callbacks;
-    constructor(ctx: ToolContext, callbacks: DrawingCallbacks);
+    constructor(ctx: ToolContext, callbacks: DrawingHostDeps);
     /** Whether a draw operation is currently active */
     get isActive(): boolean;
     /** Whether paint strokes are being recorded */
@@ -77,6 +53,22 @@ export declare class DrawingTool extends BaseTool {
      * @returns true if drawing was in progress when leave occurred
      */
     onPointerLeave(): boolean;
+    /**
+     * Create a self-managing mouseover/mouseout/mousemove handler
+     * that tracks brush hover position for the preview circle.
+     *
+     * The returned function should be registered on drawingCanvas for
+     * "mouseover" and "mouseout" events.  It adds/removes a "mousemove"
+     * listener on itself to keep mouseOverX/Y up-to-date while the
+     * cursor is inside the canvas.
+     */
+    createBrushTrackingHandler(): (e: MouseEvent) => void;
+    /**
+     * Render brush circle preview on the drawing context.
+     * Called from the start() render loop when in draw mode and not
+     * actively painting.  Skipped in pencil/eraser mode.
+     */
+    renderBrushPreview(ctx: CanvasRenderingContext2D, width: number, height: number): void;
     /** Capture pre-draw slice snapshot for undo */
     private capturePreDrawSnapshot;
     /** Push delta to UndoManager after drawing completes */

package/dist/Utils/segmentation/tools/DrawingTool.js CHANGED Viewed

@@ -133,6 +133,54 @@ export class DrawingTool extends BaseTool {
         this.ctx.protectedData.ctxes.drawingLayerMasterCtx.closePath();
         return true;
     }
+    // ── Brush hover tracking & preview ──────────────────────────
+    /**
+     * Create a self-managing mouseover/mouseout/mousemove handler
+     * that tracks brush hover position for the preview circle.
+     *
+     * The returned function should be registered on drawingCanvas for
+     * "mouseover" and "mouseout" events.  It adds/removes a "mousemove"
+     * listener on itself to keep mouseOverX/Y up-to-date while the
+     * cursor is inside the canvas.
+     */
+    createBrushTrackingHandler() {
+        const handler = (e) => {
+            e.preventDefault();
+            this.ctx.nrrd_states.interaction.mouseOverX = e.offsetX;
+            this.ctx.nrrd_states.interaction.mouseOverY = e.offsetY;
+            if (this.ctx.nrrd_states.interaction.mouseOverX === undefined) {
+                this.ctx.nrrd_states.interaction.mouseOverX = e.clientX;
+                this.ctx.nrrd_states.interaction.mouseOverY = e.clientY;
+            }
+            if (e.type === "mouseout") {
+                this.ctx.nrrd_states.interaction.mouseOver = false;
+                this.ctx.protectedData.canvases.drawingCanvas.removeEventListener("mousemove", handler);
+            }
+            else if (e.type === "mouseover") {
+                this.ctx.nrrd_states.interaction.mouseOver = true;
+                this.ctx.protectedData.canvases.drawingCanvas.addEventListener("mousemove", handler);
+            }
+        };
+        return handler;
+    }
+    /**
+     * Render brush circle preview on the drawing context.
+     * Called from the start() render loop when in draw mode and not
+     * actively painting.  Skipped in pencil/eraser mode.
+     */
+    renderBrushPreview(ctx, width, height) {
+        if (this.ctx.gui_states.mode.pencil ||
+            this.ctx.gui_states.mode.eraser ||
+            !this.ctx.nrrd_states.interaction.mouseOver) {
+            return;
+        }
+        ctx.clearRect(0, 0, width, height);
+        ctx.fillStyle = this.ctx.gui_states.drawing.brushColor;
+        ctx.beginPath();
+        ctx.arc(this.ctx.nrrd_states.interaction.mouseOverX, this.ctx.nrrd_states.interaction.mouseOverY, this.ctx.gui_states.drawing.brushAndEraserSize / 2 + 1, 0, Math.PI * 2);
+        ctx.strokeStyle = this.ctx.gui_states.drawing.brushColor;
+        ctx.stroke();
+    }
     // ── Private helpers ────────────────────────────────────────
     /** Capture pre-draw slice snapshot for undo */
     capturePreDrawSnapshot() {

package/dist/Utils/segmentation/tools/DrawingTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/Utils/segmentation/tools/ImageStoreHelper.d.ts CHANGED Viewed

@@ -8,13 +8,10 @@
  */
 import { BaseTool } from "./BaseTool";
 import type { ToolContext } from "./BaseTool";
-export interface ImageStoreCallbacks {
-    setEmptyCanvasSize: (axis?: "x" | "y" | "z") => void;
-    drawImageOnEmptyImage: (canvas: HTMLCanvasElement) => void;
-}
+import type { ImageStoreHostDeps } from "./ToolHost";
 export declare class ImageStoreHelper extends BaseTool {
     private callbacks;
-    constructor(ctx: ToolContext, callbacks: ImageStoreCallbacks);
+    constructor(ctx: ToolContext, callbacks: ImageStoreHostDeps);
     /**
      * Get MaskVolume for a specific layer.
      * Delegates to the volumes stored in protectedData.maskData.

package/dist/Utils/segmentation/tools/ImageStoreHelper.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/Utils/segmentation/tools/LayerChannelManager.d.ts ADDED Viewed

@@ -0,0 +1,52 @@
+import { BaseTool } from "./BaseTool";
+import type { ToolContext } from "./BaseTool";
+import type { ChannelValue, RGBAColor, ChannelColorMap } from "../core";
+import type { SphereType } from "./SphereTool";
+import type { LayerChannelHostDeps } from "./ToolHost";
+/**
+ * Manages layer/channel state: active selection, visibility, and channel colors.
+ *
+ * Extracted from NrrdTools.ts to reduce its size.
+ * Follows the same BaseTool + ToolContext + Callbacks pattern as other tools.
+ */
+export declare class LayerChannelManager extends BaseTool {
+    private callbacks;
+    constructor(ctx: ToolContext, callbacks: LayerChannelHostDeps);
+    /****************************Active Layer/Channel****************************************************/
+    setActiveLayer(layerId: string): void;
+    getActiveLayer(): string;
+    setActiveChannel(channel: ChannelValue): void;
+    getActiveChannel(): number;
+    /**
+     * Set the active sphere type and sync brush/fill color.
+     *
+     * @example
+     * ```ts
+     * nrrdTools.setActiveSphereType('nipple');
+     * ```
+     */
+    setActiveSphereType(type: SphereType): void;
+    getActiveSphereType(): SphereType;
+    /****************************Visibility****************************************************/
+    setLayerVisible(layerId: string, visible: boolean): void;
+    isLayerVisible(layerId: string): boolean;
+    setChannelVisible(layerId: string, channel: ChannelValue, visible: boolean): void;
+    isChannelVisible(layerId: string, channel: ChannelValue): boolean;
+    getLayerVisibility(): Record<string, boolean>;
+    getChannelVisibility(): Record<string, Record<number, boolean>>;
+    hasLayerData(layerId: string): boolean;
+    /****************************Channel Colors****************************************************/
+    setChannelColor(layerId: string, channel: number, color: RGBAColor): void;
+    getChannelColor(layerId: string, channel: number): RGBAColor;
+    getChannelHexColor(layerId: string, channel: number): string;
+    getChannelCssColor(layerId: string, channel: number): string;
+    setChannelColors(layerId: string, colorMap: Partial<ChannelColorMap>): void;
+    setAllLayersChannelColor(channel: number, color: RGBAColor): void;
+    resetChannelColors(layerId?: string, channel?: number): void;
+    /****************************Private Helpers****************************************************/
+    /**
+     * Sync brush/fill color from the active layer's volume channel color.
+     * Falls back to global CHANNEL_HEX_COLORS if volume not available.
+     */
+    private syncBrushColor;
+}