copper3d 3.0.2 → 3.1.0

package/dist/Utils/segmentation/CommToolsData.js

@@ -1,474 +0,0 @@
-import { NrrdState } from "./coreTools/NrrdState";
-import { GuiState } from "./coreTools/GuiState";
-import { MaskVolume } from "./core/index";
-import { switchPencilIcon } from "../utils";
-import { CHANNEL_HEX_COLORS } from "./core/types";
-export class CommToolsData {
-    constructor(container, mainAreaContainer, options) {
-        var _a;
-        this.baseCanvasesSize = 1;
-        // Reusable ImageData buffer for zero-allocation slice rendering
-        this._reusableSliceBuffer = null;
-        this._reusableBufferWidth = 0;
-        this._reusableBufferHeight = 0;
-        /** External annotation callbacks — set via draw() options */
-        this.annotationCallbacks = {
-            onMaskChanged: () => { },
-            onSphereChanged: () => { },
-            onCalculatorPositionsChanged: () => { },
-            onLayerVolumeCleared: () => { },
-            onChannelColorChanged: () => { },
-        };
-        /** Whether the keyboard-config dialog is open (suppresses all shortcuts). */
-        this._configKeyBoard = false;
-        /** Active keyboard shortcut bindings. */
-        this._keyboardSettings = {
-            draw: "Shift",
-            undo: "z",
-            redo: "y",
-            contrast: ["Control", "Meta"],
-            crosshair: "s",
-            sphere: "q",
-            mouseWheel: "Scroll:Zoom",
-        };
-        this.nrrd_states = new NrrdState(this.baseCanvasesSize);
-        this.cursorPage = {
-            x: {
-                cursorPageX: 0,
-                cursorPageY: 0,
-                index: 0,
-                updated: false,
-            },
-            y: {
-                cursorPageX: 0,
-                cursorPageY: 0,
-                index: 0,
-                updated: false,
-            },
-            z: {
-                cursorPageX: 0,
-                cursorPageY: 0,
-                index: 0,
-                updated: false,
-            },
-        };
-        this.gui_states = new GuiState({
-            defaultPaintCursor: switchPencilIcon("dot"),
-            defaultFillColor: CHANNEL_HEX_COLORS[1],
-            defaultBrushColor: CHANNEL_HEX_COLORS[1],
-        });
-        const layers = (_a = options === null || options === void 0 ? void 0 : options.layers) !== null && _a !== void 0 ? _a : ["layer1", "layer2", "layer3"];
-        if (layers.length > 10) {
-            console.warn(`CommToolsData: ${layers.length} layers requested; recommended maximum is 10.`);
-        }
-        // Override the default states with the actual layer list
-        this.nrrd_states.image.layers = layers;
-        this.gui_states.layerChannel.layerVisibility = Object.fromEntries(layers.map((id) => [id, true]));
-        this.gui_states.layerChannel.channelVisibility = Object.fromEntries(layers.map((id) => [
-            id,
-            { 1: true, 2: true, 3: true, 4: true, 5: true, 6: true, 7: true, 8: true },
-        ]));
-        const systemCanvases = this.generateSystemCanvases();
-        const layerTargets = this.generateLayerTargets(layers);
-        // Get NRRD dimensions (will be set later when NRRD loads)
-        // Default to 1x1x1 for now, will be re-initialized in NrrdTools when dimensions are known
-        const dims = this.nrrd_states.image.dimensions;
-        const [width, height, depth] = dims.length === 3 ? dims : [1, 1, 1];
-        this.protectedData = {
-            container,
-            mainAreaContainer,
-            allSlicesArray: [],
-            displaySlices: [],
-            backUpDisplaySlices: [],
-            skipSlicesDic: {},
-            currentShowingSlice: undefined,
-            mainPreSlices: undefined,
-            isDrawing: false,
-            axis: "z",
-            maskData: {
-                // Volumetric storage (Phase 3 — only storage mechanism)
-                volumes: layers.reduce((acc, id) => {
-                    acc[id] = new MaskVolume(width, height, depth, 1);
-                    return acc;
-                }, {}),
-            },
-            layerTargets,
-            canvases: {
-                /**
-                 * Caches raw image data from the current slice.
-                 * Used as a source for zoom/pan operations to avoid repeated decoding.
-                 * Initialized as null, set in NrrdTools.ts.
-                 */
-                originCanvas: null,
-                /**
-                 * Top-most interaction layer.
-                 * Captures mouse/pen events and displays real-time drawing strokes
-                 * before they are committed to a specific layer.
-                 */
-                drawingCanvas: systemCanvases.drawingCanvas,
-                /**
-                 * Background layer displaying the actual medical image slice (CT/MRI).
-                 * This is the "base" image the user sees.
-                 */
-                displayCanvas: systemCanvases.displayCanvas,
-                /**
-                 * Composite display layer.
-                 * Merges all segmentation layers for unified visualization
-                 * on top of the medical image.
-                 */
-                drawingCanvasLayerMaster: systemCanvases.drawingCanvasLayerMaster,
-                /**
-                 * Dedicated layer for 3D Sphere tool visualization.
-                 * Kept separate to allow independent rendering of sphere UI elements.
-                 */
-                drawingSphereCanvas: systemCanvases.drawingSphereCanvas,
-                /**
-                 * Off-screen scratchpad canvas.
-                 * Used for internal image processing, scaling, and format conversion.
-                 */
-                emptyCanvas: systemCanvases.emptyCanvas,
-            },
-            ctxes: {
-                drawingCtx: systemCanvases.drawingCanvas.getContext("2d"),
-                displayCtx: systemCanvases.displayCanvas.getContext("2d"),
-                drawingLayerMasterCtx: systemCanvases.drawingCanvasLayerMaster.getContext("2d"),
-                drawingSphereCtx: systemCanvases.drawingSphereCanvas.getContext("2d"),
-                emptyCtx: systemCanvases.emptyCanvas.getContext("2d", {
-                    willReadFrequently: true,
-                }),
-            },
-        };
-    }
-    // ── Volume Accessor Helpers (Phase 2) ──────────────────────────────────
-    /**
-     * Get MaskVolume for a specific layer
-     *
-     * @param layer - Layer name: "layer1", "layer2", or "layer3"
-     * @returns MaskVolume instance for the specified layer
-     *
-     * @example
-     * ```ts
-     * const volume = this.getVolumeForLayer("layer1");
-     * volume.setVoxel(x, y, z, 255);
-     * ```
-     */
-    getVolumeForLayer(layer) {
-        const { volumes } = this.protectedData.maskData;
-        const vol = volumes[layer];
-        if (vol)
-            return vol;
-        const firstLayerId = this.nrrd_states.image.layers[0];
-        console.warn(`CommToolsData: unknown layer "${layer}", falling back to "${firstLayerId}"`);
-        return volumes[firstLayerId];
-    }
-    /**
-     * Get MaskVolume for the currently active layer
-     *
-     * @returns MaskVolume instance for the current layer
-     *
-     * @example
-     * ```ts
-     * const volume = this.getCurrentVolume();
-     * const slice = volume.getSliceImageData(50, 'z');
-     * ```
-     */
-    getCurrentVolume() {
-        return this.getVolumeForLayer(this.gui_states.layerChannel.layer);
-    }
-    /**
-     * Get all three MaskVolume instances
-     *
-     * @returns Object containing all three layer volumes
-     *
-     * @example
-     * ```ts
-     * const { layer1, layer2, layer3 } = this.getAllVolumes();
-     * layer1.clear();
-     * ```
-     */
-    getAllVolumes() {
-        return this.protectedData.maskData.volumes;
-    }
-    // ───────────────────────────────────────────────────────────────────────
-    generateSystemCanvases() {
-        return {
-            drawingCanvas: document.createElement("canvas"),
-            displayCanvas: document.createElement("canvas"),
-            drawingCanvasLayerMaster: document.createElement("canvas"),
-            drawingSphereCanvas: document.createElement("canvas"),
-            emptyCanvas: document.createElement("canvas"),
-        };
-    }
-    generateLayerTargets(layerIds) {
-        const map = new Map();
-        for (const id of layerIds) {
-            const canvas = document.createElement("canvas");
-            const ctx = canvas.getContext("2d");
-            map.set(id, { canvas, ctx });
-        }
-        return map;
-    }
-    /**
-     * Rewrite this {clearActiveSlice} function under DrawToolCore
-     */
-    clearActiveSlice() {
-        throw new Error("Child class must implement abstract clearActiveSlice, currently you can find it in DrawToolCore.");
-    }
-    /**
-     * Rewrite this {undoLastPainting} function under DrawToolCore
-     */
-    undoLastPainting() {
-        throw new Error("Child class must implement abstract undoLastPainting, currently you can find it in DrawToolCore.");
-    }
-    /**
-     * Rewrite this {redoLastPainting} function under DrawToolCore
-     */
-    redoLastPainting() {
-        throw new Error("Child class must implement abstract redoLastPainting, currently you can find it in DrawToolCore.");
-    }
-    /**
-     * Rewrite this {clearActiveLayer} function under NrrdTools
-     */
-    clearActiveLayer() {
-        throw new Error("Child class must implement abstract clearActiveLayer, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Rewrite this {resizePaintArea} function under NrrdTools
-     */
-    resizePaintArea(factor) {
-        throw new Error("Child class must implement abstract resizePaintArea, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Rewrite this {setIsDrawFalse} function under NrrdTools
-     */
-    setIsDrawFalse(target) {
-        throw new Error("Child class must implement abstract setIsDrawFalse, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Rewrite this {updateOriginAndChangedWH} function under NrrdTools
-     */
-    updateOriginAndChangedWH() {
-        throw new Error("Child class must implement abstract updateOriginAndChangedWH, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Rewrite this {flipDisplayImageByAxis} function under NrrdTools
-     */
-    flipDisplayImageByAxis() {
-        throw new Error("Child class must implement abstract flipDisplayImageByAxis, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Rewrite this {resetPaintAreaUIPosition} function under NrrdTools
-     */
-    resetPaintAreaUIPosition(l, t) {
-        throw new Error("Child class must implement abstract resetPaintAreaUIPosition, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Rewrite this {resetPaintAreaUIPosition} function under NrrdTools
-     */
-    setEmptyCanvasSize(axis) {
-        throw new Error("Child class must implement abstract setEmptyCanvasSize, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Rewrite this {convertCursorPoint} function under NrrdTools
-     */
-    convertCursorPoint(from, to, cursorNumX, cursorNumY, currentSliceIndex) {
-        throw new Error("Child class must implement abstract convertCursorPoint, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Rewrite this {resetLayerCanvas} function under NrrdTools
-     */
-    resetLayerCanvas() {
-        throw new Error("Child class must implement abstract resetLayerCanvas, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Enter sphere mode: clear all layer canvases (not MaskVolume),
-     * hide all mask data so sphere overlay is the only visible annotation.
-     * Rewrite this under NrrdTools.
-     */
-    enterSphereMode() {
-        throw new Error("Child class must implement abstract enterSphereMode, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Exit sphere mode: clear sphere canvas overlay, reload all layer
-     * MaskVolume data back onto canvases. Rewrite this under NrrdTools.
-     */
-    exitSphereMode() {
-        throw new Error("Child class must implement abstract exitSphereMode, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Rewrite this {setSyncsliceNum} function under NrrdTools
-     */
-    setSyncsliceNum() {
-        throw new Error("Child class must implement abstract setSyncsliceNum, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Rewrite this {redrawDisplayCanvas} function under NrrdTools
-     */
-    redrawDisplayCanvas() {
-        throw new Error("Child class must implement abstract redrawDisplayCanvas, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Get a painted mask image based on current axis and input slice index.
-     *
-     * Phase 3: Reads directly from MaskVolume.
-     *
-     * @param axis "x" | "y" | "z"
-     * @param sliceIndex number
-     * @returns Object with index and image, or undefined
-     */
-    filterDrawedImage(axis, sliceIndex) {
-        try {
-            const volume = this.getCurrentVolume();
-            if (volume) {
-                const dims = volume.getDimensions();
-                const [w, h] = axis === 'z' ? [dims.width, dims.height]
-                    : axis === 'y' ? [dims.width, dims.depth]
-                        // Sagittal: width = depth (Z), height = height (Y)
-                        : [dims.depth, dims.height];
-                const imageData = new ImageData(w, h);
-                const channelVis = this.gui_states.layerChannel.channelVisibility[this.gui_states.layerChannel.layer];
-                volume.renderLabelSliceInto(sliceIndex, axis, imageData, channelVis);
-                return { index: sliceIndex, image: imageData };
-            }
-        }
-        catch (err) {
-            // Volume not ready or slice out of bounds
-        }
-        return undefined;
-    }
-    /**
-     * Get or create a reusable ImageData buffer for the given axis.
-     *
-     * Reuses the same buffer across multiple slice renders to avoid
-     * allocating a new ImageData per layer per slice switch.
-     * The buffer is only reallocated when slice dimensions change (axis switch).
-     *
-     * @param axis - Axis: "x", "y", or "z"
-     * @returns Reusable ImageData buffer with correct dimensions
-     */
-    getOrCreateSliceBuffer(axis) {
-        try {
-            const vol = this.getVolumeForLayer(this.nrrd_states.image.layers[0]);
-            const dims = vol.getDimensions();
-            const [w, h] = axis === "z" ? [dims.width, dims.height] :
-                axis === "y" ? [dims.width, dims.depth] :
-                    // Sagittal: width = depth (Z), height = height (Y)
-                    // Matches setEmptyCanvasSize('x') and MaskVolume.getSliceDimensions('x')
-                    [dims.depth, dims.height];
-            if (!this._reusableSliceBuffer ||
-                this._reusableBufferWidth !== w ||
-                this._reusableBufferHeight !== h) {
-                this._reusableSliceBuffer = new ImageData(w, h);
-                this._reusableBufferWidth = w;
-                this._reusableBufferHeight = h;
-            }
-            return this._reusableSliceBuffer;
-        }
-        catch (_a) {
-            return null; // Volume not ready
-        }
-    }
-    /**
-     * Render a layer's slice into a reusable buffer and draw to the target canvas.
-     *
-     * Uses MaskVolume.renderLabelSliceInto() for zero-allocation rendering.
-     * The caller should obtain the buffer via getOrCreateSliceBuffer() and reuse
-     * it across multiple layer renders.
-     *
-     * @param layer - Layer name: "layer1", "layer2", or "layer3"
-     * @param axis - Axis: "x", "y", or "z"
-     * @param sliceIndex - Slice index
-     * @param buffer - Reusable ImageData buffer (from getOrCreateSliceBuffer)
-     * @param targetCtx - Canvas context to draw the result onto
-     * @param scaledWidth - Target display width
-     * @param scaledHeight - Target display height
-     */
-    renderSliceToCanvas(layer, axis, sliceIndex, buffer, targetCtx, scaledWidth, scaledHeight) {
-        try {
-            const volume = this.getVolumeForLayer(layer);
-            if (!volume)
-                return;
-            // Get channel visibility for this layer
-            const channelVis = this.gui_states.layerChannel.channelVisibility[layer];
-            // Render label slice at full alpha — globalAlpha applied during compositeAllLayers
-            volume.renderLabelSliceInto(sliceIndex, axis, buffer, channelVis, 1.0);
-            this.setEmptyCanvasSize(axis);
-            this.protectedData.ctxes.emptyCtx.putImageData(buffer, 0, 0);
-            targetCtx.imageSmoothingEnabled = false;
-            // Coronal (axis='y') Z-flip: vertically flip the rendered mask to match
-            // the Z-flip applied during the write path (syncLayerSliceData).
-            // Same pattern as SphereTool.refreshSphereCanvas('y') scale(1,-1).
-            // Same-view: write_flip + read_flip = identity (correct).
-            // Cross-view (sagittal↔coronal): aligns Z-axis direction (fixes flip bug).
-            if (axis === 'y') {
-                targetCtx.save();
-                targetCtx.scale(1, -1);
-                targetCtx.translate(0, -scaledHeight);
-            }
-            targetCtx.drawImage(this.protectedData.canvases.emptyCanvas, 0, 0, scaledWidth, scaledHeight);
-            if (axis === 'y') {
-                targetCtx.restore();
-            }
-        }
-        catch (err) {
-            // Slice out of bounds or volume not ready — skip silently
-        }
-    }
-    /**
-     * Invalidate the reusable buffer (e.g. when switching datasets).
-     * The buffer will be lazily recreated on next use.
-     */
-    invalidateSliceBuffer() {
-        this._reusableSliceBuffer = null;
-        this._reusableBufferWidth = 0;
-        this._reusableBufferHeight = 0;
-    }
-    /**
-     * Apply the same flip transform used by flipDisplayImageByAxis() to any
-     * canvas context.  This ensures mask overlays align with the flipped CT image.
-     *
-     * The flip is its own inverse (applying twice = identity), so it works for
-     * both directions: volume→display (rendering) and display→volume (storing).
-     *
-     * @param ctx    Target 2D context (must be wrapped in save/restore by caller).
-     * @param width  Canvas width in pixels.
-     * @param height Canvas height in pixels.
-     * @param axis   Current viewing axis.
-     */
-    applyMaskFlipForAxis(ctx, width, height, axis) {
-        switch (axis) {
-            case "x": // sagittal: flip both axes
-                ctx.scale(-1, -1);
-                ctx.translate(-width, -height);
-                break;
-            case "y": // coronal: flip vertically
-                ctx.scale(1, -1);
-                ctx.translate(0, -height);
-                break;
-            case "z": // axial: flip vertically
-                ctx.scale(1, -1);
-                ctx.translate(0, -height);
-                break;
-        }
-    }
-    /**
-     * Composite all layer canvases to the master display canvas.
-     * Only draws layers whose visibility is enabled.
-     */
-    compositeAllLayers() {
-        const masterCtx = this.protectedData.ctxes.drawingLayerMasterCtx;
-        const width = this.nrrd_states.view.changedWidth;
-        const height = this.nrrd_states.view.changedHeight;
-        masterCtx.clearRect(0, 0, width, height);
-        // Master stores full-alpha composite; globalAlpha is applied once in
-        // start() when drawing master to drawingCtx (single point of control).
-        for (const layerId of this.nrrd_states.image.layers) {
-            if (!this.gui_states.layerChannel.layerVisibility[layerId])
-                continue;
-            const target = this.protectedData.layerTargets.get(layerId);
-            if (target)
-                masterCtx.drawImage(target.canvas, 0, 0, width, height);
-        }
-    }
-}
-//# sourceMappingURL=CommToolsData.js.map

package/dist/Utils/segmentation/CommToolsData.js.map

@@ -1 +0,0 @@
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