col-browser 2.0.0 → 2.1.0

package/es/chunks/TaxonBreakdown-BshFaQql.js

@@ -0,0 +1,205 @@
+import { j as c } from "./jsx-runtime-BzflLqGi.js";
+import { useState as w, useEffect as N } from "react";
+import { c as A } from "./config-BPRXv9x8.js";
+import { u as Z, c as T } from "./router-CssZk5qZ.js";
+import C from "highcharts";
+import "highcharts/modules/exporting";
+import K from "highcharts-react-official";
+import { get as l, keyBy as ee } from "lodash-es";
+import { Row as te, Col as S, Spin as ne, Switch as se } from "antd";
+const E = 100, oe = [
+  "kingdom",
+  "phylum",
+  "class",
+  "order",
+  "family",
+  "genus",
+  "species"
+], z = (t) => t ? `Not assigned ${t}` : "Not assigned", B = (t) => {
+  if (!t || t.length === 0) return [];
+  const o = [...t].sort((i, n) => (n.species || 0) - (i.species || 0));
+  return o.length <= E ? o : o.slice(0, E);
+}, ie = (t, o) => {
+  const i = B(t || []), n = i.reduce((u, L) => u + (L.species || 0), 0);
+  return n >= o ? i : [
+    ...i,
+    {
+      name: z(l(i, "[0].rank", "")),
+      species: o - n,
+      children: []
+    }
+  ];
+}, be = ({
+  taxon: t,
+  datasetKey: o,
+  rank: i = [],
+  dataset: n,
+  level: u = 1,
+  showLevelSwitch: L = !1,
+  darkMode: _
+}) => {
+  const G = Z("taxon"), [I, H] = w(null), [W, k] = w(!1), [M, X] = w(!1), [m, R] = w(u);
+  N(() => {
+    R(u);
+  }, [u]), N(() => {
+    t != null && t.id && o && U();
+  }, [t, o, m]);
+  const P = async () => {
+    const r = await T(
+      `${A.dataApi}dataset/${o}/nameusage/search?TAXON_ID=${encodeURIComponent(
+        t.id
+      )}&facet=rank&status=accepted&status=provisionally%20accepted&limit=0`
+    );
+    return ee(l(r, "data.facets.rank", []), "value");
+  }, U = async () => {
+    k(!0);
+    try {
+      const r = await P(), d = oe;
+      let f = d.indexOf(l(t, "name.rank"));
+      if (f === -1) {
+        let s = i.indexOf(l(t, "name.rank")) + 1;
+        for (; f === -1 && s < i.length - 1; ) {
+          const h = d.indexOf(i[s]);
+          h > -1 && (f = h - 1), s++;
+        }
+      }
+      let p, x = f + 1;
+      for (; !p && x < d.length; ) {
+        const s = l(d, `[${x}]`);
+        s && l(r, `${s}.count`, 0) > 0 ? p = s : x++;
+      }
+      if (!p) {
+        X(!0), k(!1);
+        return;
+      }
+      const y = (await T(
+        `${A.dataApi}dataset/${o}/taxon/${t.id}/breakdown?level=${m}`
+      )).data || [], j = l(r, "species.count", 0);
+      k(!1), V(y, j);
+    } catch {
+      k(!1);
+    }
+  }, V = (r, d) => {
+    const f = n.doi ? "https://doi.org/" + n.doi : null, p = C.getOptions().colors, O = (typeof _ == "boolean" ? _ : typeof window < "u" && typeof window.matchMedia == "function" && window.matchMedia("(prefers-color-scheme: dark)").matches) ? "#1f1f1f" : "#ffffff", y = {
+      click: (e) => {
+        e.point._id && G(e.point._id);
+      }
+    }, s = ie(r, d).map((e, a) => ({
+      name: e.name,
+      y: e.species,
+      _id: e.id,
+      color: p[a % p.length],
+      _kids: e.children
+    })), h = [], g = m >= 2 && s.some((e) => e._kids && e._kids.length > 0);
+    g && s.forEach((e) => {
+      const a = B(e._kids || []), v = a.reduce((b, $) => b + ($.species || 0), 0);
+      a.forEach((b, $) => {
+        const Y = -0.1 + (a.length > 1 ? $ / (a.length - 1) : 0) * 0.4;
+        h.push({
+          name: b.name,
+          y: b.species,
+          _id: b.id,
+          color: C.color(e.color).brighten(Y).get()
+        });
+      }), v < e.y && h.push({
+        name: z(l(a, "[0].rank", "")),
+        y: e.y - v,
+        color: O,
+        borderColor: O,
+        borderWidth: 0,
+        dataLabels: { enabled: !1 }
+      });
+    });
+    const F = (e) => e.map(({ _kids: a, ...v }) => v), J = d || s.reduce((e, a) => e + a.y, 0), Q = g ? {
+      formatter: function() {
+        return this.y > J / 10 ? this.point.name : null;
+      },
+      distance: -30,
+      style: {
+        color: "contrast",
+        textOutline: "1px contrast",
+        fontWeight: "bold"
+      }
+    } : {
+      formatter: function() {
+        return this.y > 1 ? "<b>" + this.point.name + ":</b> " + this.y.toLocaleString("en-GB") : null;
+      }
+    }, D = [
+      {
+        name: "Species",
+        data: F(s),
+        size: g ? "60%" : "85%",
+        dataLabels: Q,
+        point: { events: y }
+      }
+    ];
+    g && D.push({
+      name: "Species",
+      data: h,
+      size: "85%",
+      innerSize: "60%",
+      dataLabels: {
+        formatter: function() {
+          return this.y > 1 ? "<b>" + this.point.name + ":</b> " + this.y.toLocaleString("en-GB") : null;
+        }
+      },
+      point: { events: y }
+    }), H({
+      chart: { type: "pie" },
+      credits: {
+        text: `${t.name.scientificName} in ${n.title}${n.version ? " (" + n.version + ")" : ""}. ${(n.doi ? "DOI:" + n.doi : null) || n.url || ""}`,
+        href: f || n.url || ""
+      },
+      title: { text: "" },
+      plotOptions: { pie: { shadow: !1, center: ["50%", "50%"] } },
+      tooltip: {},
+      series: D,
+      responsive: {
+        rules: [
+          {
+            condition: { maxWidth: 400 },
+            chartOptions: {
+              series: g ? [{}, { dataLabels: { enabled: !1 } }] : [{}]
+            }
+          }
+        ]
+      },
+      exporting: {
+        chartOptions: {
+          plotOptions: { series: { dataLabels: { enabled: !0 } } }
+        },
+        fallbackToExportServer: !1
+      }
+    });
+  };
+  if (M) return null;
+  const q = L ? /* @__PURE__ */ c.jsx(
+    se,
+    {
+      size: "small",
+      checked: m === 2,
+      onChange: (r) => R(r ? 2 : 1),
+      checkedChildren: "lvl2",
+      unCheckedChildren: "lvl1",
+      style: {
+        position: "absolute",
+        top: 11,
+        right: 44,
+        zIndex: 2,
+        background: m === 2 ? "#8c8c8c" : "#bfbfbf"
+      }
+    }
+  ) : null;
+  return /* @__PURE__ */ c.jsxs("div", { style: { position: "relative" }, children: [
+    q,
+    W || !I ? /* @__PURE__ */ c.jsxs(te, { style: { padding: "48px" }, children: [
+      /* @__PURE__ */ c.jsx(S, { flex: "auto" }),
+      /* @__PURE__ */ c.jsx(S, { children: /* @__PURE__ */ c.jsx(ne, { size: "large" }) }),
+      /* @__PURE__ */ c.jsx(S, { flex: "auto" })
+    ] }) : /* @__PURE__ */ c.jsx(K, { highcharts: C, options: I })
+  ] });
+};
+export {
+  be as T
+};
+//# sourceMappingURL=TaxonBreakdown-BshFaQql.js.map

package/es/chunks/TaxonBreakdown-BshFaQql.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"TaxonBreakdown-BshFaQql.js","sources":["../../src/Taxon/TaxonBreakdown.js"],"sourcesContent":["import React, { useState, useEffect } from \"react\";\nimport config from \"../config\";\nimport client from \"../api/client\";\nimport Highcharts from \"highcharts\";\nimport \"highcharts/modules/exporting\";\nimport HighchartsReact from \"highcharts-react-official\";\nimport { get, keyBy } from \"lodash-es\";\nimport { Spin, Row, Col, Switch } from \"antd\";\nimport { useNavigateTo } from \"../router\";\n\nconst MAX_SLICES_PER_RING = 100;\nconst canonicalRanks = [\n  \"kingdom\",\n  \"phylum\",\n  \"class\",\n  \"order\",\n  \"family\",\n  \"genus\",\n  \"species\",\n];\n\nconst notAssignedLabel = (rk) => (rk ? `Not assigned ${rk}` : \"Not assigned\");\n\nconst sortAndClip = (nodes) => {\n  if (!nodes || nodes.length === 0) return [];\n  const sorted = [...nodes].sort((a, b) => (b.species || 0) - (a.species || 0));\n  return sorted.length <= MAX_SLICES_PER_RING\n    ? sorted\n    : sorted.slice(0, MAX_SLICES_PER_RING);\n};\n\n// Append a \"Not assigned <rank>\" slice for the difference between a parent's\n// total species count and the sum of its visible children. Covers two cases:\n//   1. species that sit directly under the parent without an intermediate rank\n//   2. species under children that were clipped out by sortAndClip\nconst padNotAssigned = (kids, parentSpecies) => {\n  const sorted = sortAndClip(kids || []);\n  const sum = sorted.reduce((a, n) => a + (n.species || 0), 0);\n  if (sum >= parentSpecies) return sorted;\n  return [\n    ...sorted,\n    {\n      name: notAssignedLabel(get(sorted, \"[0].rank\", \"\")),\n      species: parentSpecies - sum,\n      children: [],\n    },\n  ];\n};\n\nconst TaxonBreakdown = ({\n  taxon,\n  datasetKey,\n  rank = [],\n  dataset,\n  level = 1,\n  showLevelSwitch = false,\n  darkMode,\n}) => {\n  const navigateToTaxon = useNavigateTo(\"taxon\");\n  const [options, setOptions] = useState(null);\n  const [loading, setLoading] = useState(false);\n  const [invalid, setInvalid] = useState(false);\n  // The chart's effective level is controlled internally when the switch\n  // is enabled, so toggling can refetch + re-render the chart. Otherwise\n  // the prop drives directly.\n  const [activeLevel, setActiveLevel] = useState(level);\n  useEffect(() => {\n    setActiveLevel(level);\n  }, [level]);\n  useEffect(() => {\n    if (taxon?.id && datasetKey) {\n      getData();\n    }\n    // eslint-disable-next-line react-hooks/exhaustive-deps\n  }, [taxon, datasetKey, activeLevel]);\n\n  const getOverView = async () => {\n    const res = await client(\n      `${\n        config.dataApi\n      }dataset/${datasetKey}/nameusage/search?TAXON_ID=${encodeURIComponent(\n        taxon.id\n      )}&facet=rank&status=accepted&status=provisionally%20accepted&limit=0`\n    );\n    return keyBy(get(res, \"data.facets.rank\", []), \"value\");\n  };\n\n  const getData = async () => {\n    setLoading(true);\n    try {\n      const counts = await getOverView();\n\n      // confirm the focal taxon has at least one child rank with content\n      const ranks = canonicalRanks;\n      let taxonRankIdx = ranks.indexOf(get(taxon, \"name.rank\"));\n      if (taxonRankIdx === -1) {\n        let rankIndex = rank.indexOf(get(taxon, \"name.rank\")) + 1;\n        while (taxonRankIdx === -1 && rankIndex < rank.length - 1) {\n          const canonicalRankIndex = ranks.indexOf(rank[rankIndex]);\n          if (canonicalRankIndex > -1) {\n            taxonRankIdx = canonicalRankIndex - 1;\n          }\n          rankIndex++;\n        }\n      }\n      let childRank;\n      let childRankIndex = taxonRankIdx + 1;\n      while (!childRank && childRankIndex < ranks.length) {\n        const nextRank = get(ranks, `[${childRankIndex}]`);\n        if (nextRank && get(counts, `${nextRank}.count`, 0) > 0) {\n          childRank = nextRank;\n        } else {\n          childRankIndex++;\n        }\n      }\n      if (!childRank) {\n        setInvalid(true);\n        setLoading(false);\n        return;\n      }\n\n      const res = await client(\n        `${config.dataApi}dataset/${datasetKey}/taxon/${taxon.id}/breakdown?level=${activeLevel}`\n      );\n      const children = res.data || [];\n      const totalSpecies = get(counts, \"species.count\", 0);\n\n      setLoading(false);\n      buildChart(children, totalSpecies);\n    } catch (err) {\n      setLoading(false);\n    }\n  };\n\n  const buildChart = (children, totalSpecies) => {\n    const DOI = dataset.doi ? \"https://doi.org/\" + dataset.doi : null;\n    const baseColors = Highcharts.getOptions().colors;\n    // Colour used for outer-ring \"gap\" slices: match the page background so\n    // the wedge reads as empty space rather than overlapping the inner pie.\n    // Follows the explicit `darkMode` prop if given, otherwise prefers-color-scheme.\n    const prefersDark =\n      typeof darkMode === \"boolean\"\n        ? darkMode\n        : typeof window !== \"undefined\" &&\n          typeof window.matchMedia === \"function\" &&\n          window.matchMedia(\"(prefers-color-scheme: dark)\").matches;\n    const gapColor = prefersDark ? \"#1f1f1f\" : \"#ffffff\";\n    const taxonClickHandler = {\n      click: (e) => {\n        if (e.point._id) {\n          navigateToTaxon(e.point._id);\n        }\n      },\n    };\n\n    // Inner pie: direct children of the focal taxon. Pad with a single\n    // \"Not assigned <rank>\" slice if focal-taxon species don't fully sum up.\n    const innerNodes = padNotAssigned(children, totalSpecies);\n    const innerData = innerNodes.map((n, i) => ({\n      name: n.name,\n      y: n.species,\n      _id: n.id,\n      color: baseColors[i % baseColors.length],\n      _kids: n.children,\n    }));\n\n    // Outer ring: children of each inner slice (grandchildren of focal),\n    // coloured as a monochrome brightness shift of the parent so each\n    // family of arcs reads as one hue group. Only rendered when level >= 2\n    // AND the response actually carries that depth. With level=1 we draw\n    // a single-ring pie even if the API returned nested children.\n    const outerData = [];\n    const hasOuterData =\n      activeLevel >= 2 && innerData.some((s) => s._kids && s._kids.length > 0);\n    if (hasOuterData) {\n      innerData.forEach((slice) => {\n        const sorted = sortAndClip(slice._kids || []);\n        const sum = sorted.reduce((a, n) => a + (n.species || 0), 0);\n        sorted.forEach((g, j) => {\n          const t = sorted.length > 1 ? j / (sorted.length - 1) : 0;\n          const shift = -0.1 + t * 0.4;\n          outerData.push({\n            name: g.name,\n            y: g.species,\n            _id: g.id,\n            color: Highcharts.color(slice.color).brighten(shift).get(),\n          });\n        });\n        // Where children don't fully account for the inner slice, add a\n        // transparent gap slice so the outer ring stays angularly aligned\n        // with the inner pie but the missing portion reads as empty space\n        // (rather than a labelled \"Not assigned\" wedge).\n        if (sum < slice.y) {\n          outerData.push({\n            name: notAssignedLabel(get(sorted, \"[0].rank\", \"\")),\n            y: slice.y - sum,\n            color: gapColor,\n            borderColor: gapColor,\n            borderWidth: 0,\n            dataLabels: { enabled: false },\n          });\n        }\n      });\n    }\n\n    const clean = (rows) => rows.map(({ _kids, ...rest }) => rest);\n    const grandTotal = totalSpecies || innerData.reduce((a, s) => a + s.y, 0);\n\n    const innerLabelStyle = {\n      color: \"contrast\",\n      textOutline: \"1px contrast\",\n      fontWeight: \"bold\",\n    };\n\n    // Inner-ring data labels: only positioned inside the ring when there's\n    // an outer ring fighting for the external label gutter. With just one\n    // ring (level=1) the labels live outside the chart, same as the outer\n    // ring at level=2, with the slice name + species count.\n    const innerDataLabels = hasOuterData\n      ? {\n          formatter: function () {\n            return this.y > grandTotal / 10 ? this.point.name : null;\n          },\n          distance: -30,\n          style: innerLabelStyle,\n        }\n      : {\n          formatter: function () {\n            return this.y > 1\n              ? \"<b>\" +\n                  this.point.name +\n                  \":</b> \" +\n                  this.y.toLocaleString(\"en-GB\")\n              : null;\n          },\n        };\n\n    const series = [\n      {\n        name: \"Species\",\n        data: clean(innerData),\n        size: hasOuterData ? \"60%\" : \"85%\",\n        dataLabels: innerDataLabels,\n        point: { events: taxonClickHandler },\n      },\n    ];\n    if (hasOuterData) {\n      series.push({\n        name: \"Species\",\n        data: outerData,\n        size: \"85%\",\n        innerSize: \"60%\",\n        dataLabels: {\n          formatter: function () {\n            return this.y > 1\n              ? \"<b>\" +\n                  this.point.name +\n                  \":</b> \" +\n                  this.y.toLocaleString(\"en-GB\")\n              : null;\n          },\n        },\n        point: { events: taxonClickHandler },\n      });\n    }\n\n    setOptions({\n      chart: { type: \"pie\" },\n      credits: {\n        text: `${taxon.name.scientificName} in ${dataset.title}${\n          dataset.version ? \" (\" + dataset.version + \")\" : \"\"\n        }. ${(dataset.doi ? \"DOI:\" + dataset.doi : null) || dataset.url || \"\"}`,\n        href: DOI || dataset.url || \"\",\n      },\n      title: { text: \"\" },\n      plotOptions: { pie: { shadow: false, center: [\"50%\", \"50%\"] } },\n      tooltip: {},\n      series,\n      responsive: {\n        rules: [\n          {\n            condition: { maxWidth: 400 },\n            chartOptions: {\n              series: hasOuterData\n                ? [{}, { dataLabels: { enabled: false } }]\n                : [{}],\n            },\n          },\n        ],\n      },\n      exporting: {\n        chartOptions: {\n          plotOptions: { series: { dataLabels: { enabled: true } } },\n        },\n        fallbackToExportServer: false,\n      },\n    });\n  };\n\n  if (invalid) return null;\n\n  // Place the level toggle inside the chart's top-right area, just left of\n  // the Highcharts context-menu (≡) icon, so it doesn't consume an extra\n  // row. Colourless switch with lvl1 / lvl2 labels.\n  const levelSwitch = showLevelSwitch ? (\n    <Switch\n      size=\"small\"\n      checked={activeLevel === 2}\n      onChange={(checked) => setActiveLevel(checked ? 2 : 1)}\n      checkedChildren=\"lvl2\"\n      unCheckedChildren=\"lvl1\"\n      style={{\n        position: \"absolute\",\n        top: 11,\n        right: 44,\n        zIndex: 2,\n        background: activeLevel === 2 ? \"#8c8c8c\" : \"#bfbfbf\",\n      }}\n    />\n  ) : null;\n\n  return (\n    <div style={{ position: \"relative\" }}>\n      {levelSwitch}\n      {loading || !options ? (\n        <Row style={{ padding: \"48px\" }}>\n          <Col flex=\"auto\"></Col>\n          <Col>\n            <Spin size=\"large\" />\n          </Col>\n          <Col flex=\"auto\"></Col>\n        </Row>\n      ) : (\n        <HighchartsReact highcharts={Highcharts} options={options} />\n      )}\n    </div>\n  );\n};\n\nexport default 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package/es/chunks/config-BPRXv9x8.js

@@ -0,0 +1,31 @@
+import { j as i } from "./jsx-runtime-BzflLqGi.js";
+import "react";
+import { theme as m, ConfigProvider as p } from "antd";
+function d(t) {
+  const o = (h) => {
+    const { theme: a, darkMode: r, ...s } = h;
+    if (!a && !r)
+      return /* @__PURE__ */ i.jsx(t, { ...s });
+    const e = { ...a || {} };
+    return r && !e.algorithm && (e.algorithm = m.darkAlgorithm), /* @__PURE__ */ i.jsx(p, { theme: e, children: /* @__PURE__ */ i.jsx(t, { darkMode: r, ...s }) });
+  };
+  return o.displayName = `withTheme(${t.displayName || t.name || "Component"})`, o;
+}
+const f = {
+  dataApi: "https://api.checklistbank.org/",
+  // Human-facing ChecklistBank portal. Used for outbound links to
+  // dataset / publisher pages we don't host ourselves.
+  clbPortal: "https://www.checklistbank.org",
+  // GBIF API base (no trailing slash). Used for the occurrence count and
+  // the v2 map tile endpoint.
+  gbifApi: "https://api.gbif.org",
+  // GBIF human-facing portal where the attribution link points. Stays on
+  // demo.gbif.org until the multitaxonomy occurrence search ships on
+  // www.gbif.org (expected mid-2026).
+  gbifPortal: "https://demo.gbif.org"
+};
+export {
+  f as c,
+  d as w
+};
+//# sourceMappingURL=config-BPRXv9x8.js.map

package/es/chunks/config-BPRXv9x8.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"config-BPRXv9x8.js","sources":["../../src/withTheme.js","../../src/config.js"],"sourcesContent":["import React from \"react\";\nimport { ConfigProvider, theme as antdTheme } from \"antd\";\n\n// Optional antd theming. Embedders can pass:\n//   - `theme`: a full antd ThemeConfig (token / algorithm / components),\n//     forwarded straight to ConfigProvider.\n//   - `darkMode`: convenience boolean. When true and theme.algorithm is not\n//     set, antd's darkAlgorithm is applied.\n// When neither prop is provided we render the wrapped component directly,\n// without a ConfigProvider, so the library's defaults are untouched.\nexport function withTheme(Component) {\n  const Wrapped = (props) => {\n    const { theme, darkMode, ...rest } = props;\n\n    if (!theme && !darkMode) {\n      return <Component {...rest} />;\n    }\n\n    const merged = { ...(theme || {}) };\n    if (darkMode && !merged.algorithm) {\n      merged.algorithm = antdTheme.darkAlgorithm;\n    }\n\n    return (\n      <ConfigProvider theme={merged}>\n        <Component darkMode={darkMode} {...rest} />\n      </ConfigProvider>\n    );\n  };\n  Wrapped.displayName = `withTheme(${\n    Component.displayName || Component.name || \"Component\"\n  })`;\n  return Wrapped;\n}\n\nexport default withTheme;\n","export default {\n    dataApi: \"https://api.checklistbank.org/\",\n    // Human-facing ChecklistBank portal. Used for outbound links to\n    // dataset / publisher pages we don't host ourselves.\n    clbPortal: \"https://www.checklistbank.org\",\n    // GBIF API base (no trailing slash). Used for the occurrence count and\n    // the v2 map tile endpoint.\n    gbifApi: \"https://api.gbif.org\",\n    // GBIF human-facing portal where the attribution link points. Stays on\n    // demo.gbif.org until the multitaxonomy occurrence search ships on\n    // www.gbif.org (expected mid-2026).\n    gbifPortal: \"https://demo.gbif.org\",\n};"],"names":["withTheme","Component","Wrapped","props","theme","darkMode","rest","jsx","merged","antdTheme","ConfigProvider","config"],"mappings":";;;AAUO,SAASA,EAAUC,GAAW;AACnC,QAAMC,IAAU,CAACC,MAAU;AACzB,UAAM,EAAA,OAAEC,GAAO,UAAAC,GAAU,GAAGC,MAASH;AAErC,QAAI,CAACC,KAAS,CAACC;AACb,aAAOE,gBAAAA,MAACN,GAAA,EAAW,GAAGK,EAAA,CAAM;AAG9B,UAAME,IAAS,EAAE,GAAIJ,KAAS,GAAC;AAC/B,WAAIC,KAAY,CAACG,EAAO,cACtBA,EAAO,YAAYC,EAAU,gBAI7BF,gBAAAA,EAAAA,IAACG,KAAe,OAAOF,GACrB,gCAACP,GAAA,EAAU,UAAAI,GAAqB,GAAGC,EAAA,CAAM,EAAA,CAC3C;AAAA,EAEJ;AACA,SAAAJ,EAAQ,cAAc,aACpBD,EAAU,eAAeA,EAAU,QAAQ,WAC7C,KACOC;AACT;ACjCA,MAAAS,IAAe;AAAA,EACX,SAAS;AAAA;AAAA;AAAA,EAGT,WAAW;AAAA;AAAA;AAAA,EAGX,SAAS;AAAA;AAAA;AAAA;AAAA,EAIT,YAAY;AAChB;"}

package/es/chunks/dataset-DvQG4NjA.js

@@ -0,0 +1,30 @@
+import { c } from "./router-CssZk5qZ.js";
+import { c as s } from "./config-BPRXv9x8.js";
+const p = (t) => t.then(
+  (e) => e.data,
+  (e) => null
+), $ = (t, e) => {
+  if (!(t != null && t.length)) return Promise.resolve([]);
+  const n = () => t.map(() => null), l = t.map((r) => `id=${encodeURIComponent(r)}`).join("&");
+  return c(`${s.dataApi}dataset/${e}/source/simple?${l}`).then((r) => {
+    try {
+      const o = /* @__PURE__ */ new Map();
+      return (Array.isArray(r == null ? void 0 : r.data) ? r.data : []).forEach((a) => {
+        a && a.key != null && o.set(a.key, a);
+      }), t.map((a) => o.get(a) ?? o.get(Number(a)) ?? null);
+    } catch {
+      return n();
+    }
+  }).catch(() => n());
+}, h = (t, e) => Promise.all(
+  t.map(
+    (n) => p(c(`${s.dataApi}dataset/${e}/sector/publisher/${n}`))
+  )
+), g = (t) => c(`${s.dataApi}dataset/${t}`), f = (t) => c(`${s.dataApi}dataset/${t}`);
+export {
+  f as a,
+  $ as b,
+  h as c,
+  g
+};
+//# sourceMappingURL=dataset-DvQG4NjA.js.map

package/es/chunks/dataset-DvQG4NjA.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"dataset-DvQG4NjA.js","sources":["../../src/api/dataset.js"],"sourcesContent":["import client from \"./client\";\nimport config from \"../config\";\n\nconst reflect = (p) =>\n  p.then(\n    (v) => v.data,\n    (e) => null\n  );\n\n// Bulk lookup using the API's `/source/simple?id=…&id=…` endpoint. One\n// HTTP request resolves all ids in the batch. The endpoint returns a\n// lightweight dataset object per id; results may come back in any order,\n// so we reorder by `key` to match what DataLoader expects (same length\n// and same order as the requested ids).\n//\n// Tolerates any failure mode (404, network error, malformed response, …)\n// by resolving every id in the failing batch to null. Returning the\n// expected-length array is critical — DataLoader rejects every pending\n// load() if the batch function rejects or returns the wrong length, and\n// the per-id load() rejections would in turn reject the Promise.all in\n// TaxonSources and leave the popover spinner stuck.\nexport const getDatasetsBatch = (ids, datasetKey) => {\n  if (!ids?.length) return Promise.resolve([]);\n  const nullsForAll = () => ids.map(() => null);\n  const params = ids.map((id) => `id=${encodeURIComponent(id)}`).join(\"&\");\n  return client(`${config.dataApi}dataset/${datasetKey}/source/simple?${params}`)\n    .then((res) => {\n      try {\n        const byKey = new Map();\n        const arr = Array.isArray(res?.data) ? res.data : [];\n        arr.forEach((d) => {\n          if (d && d.key != null) byKey.set(d.key, d);\n        });\n        return ids.map((id) => byKey.get(id) ?? byKey.get(Number(id)) ?? null);\n      } catch (parseErr) {\n        return nullsForAll();\n      }\n    })\n    .catch(() => nullsForAll());\n};\n\nexport const getPublishersBatch = (ids, datasetKey) => {\n  return Promise.all(\n    ids.map((i) =>\n      reflect(client(`${config.dataApi}dataset/${datasetKey}/sector/publisher/${i}`))\n    )\n  );\n};\n\nexport const getCatalogues = () => {\n  return client(`${config.dataApi}dataset/catalogues`).then(({ data }) =>\n    getDatasetsBatch(data)\n  );\n};\n\nexport const getDataset = (datasetKey) =>\n  client(`${config.dataApi}dataset/${datasetKey}`);\n\n// Lightweight dataset descriptor — includes `origin`, `title`, `version`,\n// `key`, etc. Used by Search to gate filter UI on the dataset's origin.\n// TODO: switch to `/dataset/{key}/simple` once that endpoint deploys.\n// The full /dataset/{key} response is a superset, so it works today.\nexport const getDatasetSimple = (datasetKey) =>\n  client(`${config.dataApi}dataset/${datasetKey}`);\n"],"names":["reflect","p","v","getDatasetsBatch","ids","datasetKey","nullsForAll","params","id","client","config","res","byKey","d","getPublishersBatch","i","getDataset","getDatasetSimple"],"mappings":";;AAGA,MAAMA,IAAU,CAACC,MACfA,EAAE;AAAA,EACA,CAACC,MAAMA,EAAE;AAAA,EACT,CAAC,MAAM;AACT,GAcWC,IAAmB,CAACC,GAAKC,MAAe;AACnD,MAAI,EAACD,KAAA,QAAAA,EAAK,gBAAe,QAAQ,QAAQ,CAAA,CAAE;AAC3C,QAAME,IAAc,MAAMF,EAAI,IAAI,MAAM,IAAI,GACtCG,IAASH,EAAI,IAAI,CAACI,MAAO,MAAM,mBAAmBA,CAAE,CAAC,EAAE,EAAE,KAAK,GAAG;AACvE,SAAOC,EAAO,GAAGC,EAAO,OAAO,WAAWL,CAAU,kBAAkBE,CAAM,EAAE,EAC3E,KAAK,CAACI,MAAQ;AACb,QAAI;AACF,YAAMC,wBAAY,IAAA;AAElB,cADY,MAAM,QAAQD,KAAA,gBAAAA,EAAK,IAAI,IAAIA,EAAI,OAAO,CAAA,GAC9C,QAAQ,CAACE,MAAM;AACjB,QAAIA,KAAKA,EAAE,OAAO,UAAY,IAAIA,EAAE,KAAKA,CAAC;AAAA,MAC5C,CAAC,GACMT,EAAI,IAAI,CAACI,MAAOI,EAAM,IAAIJ,CAAE,KAAKI,EAAM,IAAI,OAAOJ,CAAE,CAAC,KAAK,IAAI;AAAA,IACvE,QAAmB;AACjB,aAAOF,EAAA;AAAA,IACT;AAAA,EACF,CAAC,EACA,MAAM,MAAMA,GAAa;AAC9B,GAEaQ,IAAqB,CAACV,GAAKC,MAC/B,QAAQ;AAAA,EACbD,EAAI;AAAA,IAAI,CAACW,MACPf,EAAQS,EAAO,GAAGC,EAAO,OAAO,WAAWL,CAAU,qBAAqBU,CAAC,EAAE,CAAC;AAAA,EAAA;AAChF,GAUSC,IAAa,CAACX,MACzBI,EAAO,GAAGC,EAAO,OAAO,WAAWL,CAAU,EAAE,GAMpCY,IAAmB,CAACZ,MAC/BI,EAAO,GAAGC,EAAO,OAAO,WAAWL,CAAU,EAAE;"}

package/es/chunks/enumeration-yDQXSZsf.js

@@ -0,0 +1,12 @@
+import { c as a } from "./router-CssZk5qZ.js";
+import { c as o } from "./config-BPRXv9x8.js";
+const c = () => a(`${o.dataApi}vocab/country`).then(
+  (t) => t.data
+), e = () => a(`${o.dataApi}vocab/taxgroup`).then(
+  (t) => t.data
+);
+export {
+  e as a,
+  c as g
+};
+//# sourceMappingURL=enumeration-yDQXSZsf.js.map

package/es/chunks/enumeration-yDQXSZsf.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"enumeration-yDQXSZsf.js","sources":["../../src/api/enumeration.js"],"sourcesContent":["// import axiosInstance from './util/axiosInstance';\nimport client from \"./client\";\nimport config from \"../config\";\n\nexport const getFrequency = () => {\n  return client(`${config.dataApi}vocab/frequency`).then(res =>\n    res.data.map(e => e.name)\n  );\n};\n\nexport const getDatasetType = () => {\n  return client(`${config.dataApi}vocab/datasettype`).then(res =>\n    res.data.map(e => e.name)\n  );\n};\n\nexport const getDataFormatType = () => {\n  return client(`${config.dataApi}vocab/dataformat`).then(res =>\n    res.data.map(e => e.name)\n  );\n};\n\nexport const getDatasetOrigin = () => {\n  return client(`${config.dataApi}vocab/datasetorigin`).then(res =>\n    res.data.map(e => e.name)\n  );\n};\n\nexport const getRank = () => {\n  return client(`${config.dataApi}vocab/rank`).then(res =>\n    res.data.map(e => e.name)\n  );\n};\n\nexport const getTaxonomicStatus = () => {\n  return client(`${config.dataApi}vocab/taxonomicstatus`).then(res =>\n    res.data.map(e => e.name)\n  );\n};\n\nexport const getIssue = () => {\n  return client(`${config.dataApi}vocab/issue`).then(res =>\n    res.data\n  );\n};\n\nexport const getNameType = () => {\n  return client(`${config.dataApi}vocab/nametype`).then(res =>\n    res.data.map(e => e.name)\n  );\n};\n\nexport const getNameField = () => {\n  return client(`${config.dataApi}vocab/namefield`).then(res =>\n    res.data.map(e => e.name)\n  );\n};\n\nexport const getNomStatus = () => {\n  return client(`${config.dataApi}vocab/nomstatus`).then(res =>\n    res.data.map(e => e.name)\n  );\n};\n\nexport const getLicense = () => {\n  return client(`${config.dataApi}vocab/license`).then(res =>\n    res.data.map(e => e.name)\n  );\n};\n\nexport const getNomCode = () => {\n  return client(`${config.dataApi}vocab/nomcode`).then(res =>\n    res.data\n  );\n};\n\nexport const getImportState = () => {\n  return client(`${config.dataApi}vocab/importstate`).then(res =>\n    res.data\n  );\n};\n\nexport const getLifezones = () => {\n  return client(`${config.dataApi}vocab/lifezone`).then(res =>\n    res.data\n  );\n};\n\nexport const getSectorImportState = () => {\n  return client(`${config.dataApi}vocab/sectorimport$state`).then(res =>\n    res.data.map(e => e.name)\n  );\n};\n\nexport const getCountries = () => {\n  return client(`${config.dataApi}vocab/country`).then(res =>\n    res.data\n  );\n};\n\nexport const getTaxGroup = () => {\n  return client(`${config.dataApi}vocab/taxgroup`).then(res =>\n    res.data\n  );\n};\n\n\n\n\n"],"names":["getCountries","client","config","res","getTaxGroup"],"mappings":";;AA8FO,MAAMA,IAAe,MACnBC,EAAO,GAAGC,EAAO,OAAO,eAAe,EAAE;AAAA,EAAK,OACnDC,EAAI;AAAA,GAIKC,IAAc,MAClBH,EAAO,GAAGC,EAAO,OAAO,gBAAgB,EAAE;AAAA,EAAK,OACpDC,EAAI;AAAA;"}

package/es/chunks/index-CNK3JADR.js

@@ -0,0 +1,95 @@
+import { j as K } from "./jsx-runtime-BzflLqGi.js";
+import { useState as j, useEffect as k, useMemo as g, useCallback as T } from "react";
+import d from "query-string";
+const y = (n) => n === "hash", b = (n) => {
+  if (y(n)) {
+    const o = typeof window < "u" && window.location.hash || "", e = o.startsWith("#") ? o.slice(1) : o, t = e.indexOf("?");
+    return {
+      path: t >= 0 ? e.slice(0, t) : e,
+      search: t >= 0 ? e.slice(t) : ""
+    };
+  }
+  return {
+    path: typeof window < "u" && window.location.pathname || "",
+    search: typeof window < "u" && window.location.search || ""
+  };
+}, v = (n, o, e) => {
+  const t = e && Object.keys(e).length > 0 ? `?${d.stringify(e, { arrayFormat: "none" })}` : "";
+  if (y(n)) {
+    const s = `${o}${t}`;
+    window.location.hash = s;
+  } else {
+    const s = `${o}${t}`;
+    window.history.pushState(null, "", s), window.dispatchEvent(new PopStateEvent("popstate"));
+  }
+}, E = (n, o) => {
+  const e = y(n) ? "hashchange" : "popstate";
+  return window.addEventListener(e, o), () => window.removeEventListener(e, o);
+}, f = (n, o, e) => {
+  if (!o) return null;
+  const t = e == null || typeof e == "object" ? "" : String(e), s = typeof e == "object" && e && Object.keys(e).length > 0 ? `?${d.stringify(e, { arrayFormat: "none" })}` : "", r = `${o}${t}${s}`;
+  return y(n) ? `#${r}` : r;
+}, p = (n, o, e, t) => {
+  if (!e) return;
+  if (o === "reload") {
+    const a = f(n, e, t);
+    a != null && typeof window < "u" && window.location.assign(a);
+    return;
+  }
+  let s = e, r = null;
+  typeof t == "string" || typeof t == "number" ? s = `${e}${t}` : t && typeof t == "object" && (r = t), v(n, s, r);
+}, N = (n, o, e) => ({
+  hrefForTaxon: (t) => f(n, e.taxon, t),
+  hrefForTree: (t) => f(n, e.tree, t),
+  hrefForSearch: (t) => f(n, e.search, t),
+  hrefForSource: (t) => f(n, e.source, t),
+  onNavigateToTaxon: (t) => p(n, o, e.taxon, t),
+  onNavigateToTree: (t) => p(n, o, e.tree, t),
+  onNavigateToSearch: (t) => p(n, o, e.search, t),
+  onNavigateToSource: (t) => p(n, o, e.source, t)
+}), u = (n, o) => {
+  if (o) {
+    if (!n.startsWith(o)) {
+      const e = n.indexOf(o);
+      return e < 0 ? void 0 : n.slice(e + o.length).split("/").filter(Boolean).pop();
+    }
+    return n.slice(o.length).split("/").filter(Boolean).pop();
+  }
+};
+function I(n, o) {
+  const { kind: e, mode: t = "path", navigation: s = "spa", paths: r = {} } = o, a = (m) => {
+    const [B, S] = j(0);
+    k(() => E(t, () => S((l) => l + 1)), []);
+    const { path: c, search: $ } = b(t), F = g(() => N(t, s, r), []);
+    let i = {};
+    if (e === "taxon")
+      i.taxonKey = u(c, r.taxon);
+    else if (e === "source")
+      i.sourceDatasetKey = u(c, r.source);
+    else if (e === "taxonBreakdown")
+      i.taxonId = u(c, r.taxonBreakdown);
+    else if (e === "taxonDistribution")
+      i.taxonId = u(c, r.taxonDistribution);
+    else if (e === "bibtex")
+      i.sourceDatasetKey = u(c, r.bibtex);
+    else if (e === "tree") {
+      const l = d.parse($);
+      i.expandedTaxonKey = l.taxonKey || void 0, i.onExpandedTaxonKeyChange = T((h) => {
+        const w = b(t), x = d.parse(w.search);
+        h ? x.taxonKey = h : delete x.taxonKey, v(t, w.path || r.tree || "/", x);
+      }, []);
+    } else if (e === "search") {
+      const l = d.parse($, { arrayFormat: "none" });
+      i.filters = l, i.onFiltersChange = T((h) => {
+        const w = b(t);
+        v(t, w.path || r.search || "/", h);
+      }, []);
+    }
+    return /* @__PURE__ */ K.jsx(n, { ...F, ...i, ...m });
+  };
+  return a.displayName = `withRouting(${n.displayName || n.name || "Component"})`, a;
+}
+export {
+  I as w
+};
+//# sourceMappingURL=index-CNK3JADR.js.map

package/es/chunks/index-CNK3JADR.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index-CNK3JADR.js","sources":["../../src/url/index.js"],"sourcesContent":["import React, { useState, useEffect, useMemo, useCallback } from \"react\";\nimport qs from \"query-string\";\n\n// withRouting(Component, options): adapts a controlled col-browser\n// component to read/write the host page's URL.\n//\n//   options.kind        — one of \"taxon\" | \"tree\" | \"source\" | \"sourceList\" |\n//                         \"search\" | \"taxonBreakdown\" | \"taxonDistribution\" |\n//                         \"bibtex\"\n//   options.mode        — \"path\" (recommended for the COL portal) or \"hash\"\n//                         (used by the GitHub Pages demo)\n//   options.navigation  — \"spa\" (default) or \"reload\". Controls what the four\n//                         onNavigateToX callbacks do when an in-component\n//                         action triggers cross-page navigation (e.g. a\n//                         Highcharts pie segment click with no <a href>\n//                         fallback). \"spa\" uses history.pushState — right\n//                         for SPA hosts (react-router, Next.js, TanStack\n//                         Router). \"reload\" calls window.location.assign,\n//                         forcing the browser to load the target page —\n//                         right for static / multi-page hosts (a Jekyll\n//                         portal, the GitHub Pages demo, any plain HTML).\n//                         The in-component state callbacks\n//                         (onExpandedTaxonKeyChange, onFiltersChange) always\n//                         use pushState so they don't reload the page while\n//                         the user is interacting with a single component.\n//   options.paths       — prefix strings for the four navigation targets, e.g.\n//                         { taxon: \"/taxon/\", tree: \"/tree\", search: \"/search\",\n//                         source: \"/source/\" }. For hash mode, the prefixes\n//                         are applied to window.location.hash (without the\n//                         leading #). Both modes use plain pathnames; query\n//                         strings are only used for `expandedTaxonKey` (Tree)\n//                         and `filters` (Search).\n//\n// All wrappers provide the four hrefForX + onNavigateToX pairs, derived\n// from `paths` and the active routing mode. Kind-specific wrappers also\n// inject the controlled identifier and the appropriate change handler\n// (e.g. `filters` + `onFiltersChange` for Search).\n\nconst isHash = (mode) => mode === \"hash\";\n\nconst readLocationKind = (mode) => {\n  if (isHash(mode)) {\n    const raw = (typeof window !== \"undefined\" && window.location.hash) || \"\";\n    const hash = raw.startsWith(\"#\") ? raw.slice(1) : raw;\n    const qIdx = hash.indexOf(\"?\");\n    return {\n      path: qIdx >= 0 ? hash.slice(0, qIdx) : hash,\n      search: qIdx >= 0 ? hash.slice(qIdx) : \"\",\n    };\n  }\n  return {\n    path: (typeof window !== \"undefined\" && window.location.pathname) || \"\",\n    search: (typeof window !== \"undefined\" && window.location.search) || \"\",\n  };\n};\n\nconst writeLocation = (mode, path, search) => {\n  const searchStr = search && Object.keys(search).length > 0\n    ? `?${qs.stringify(search, { arrayFormat: \"none\" })}`\n    : \"\";\n  if (isHash(mode)) {\n    const next = `${path}${searchStr}`;\n    window.location.hash = next;\n  } else {\n    const url = `${path}${searchStr}`;\n    window.history.pushState(null, \"\", url);\n    // notify any listeners (the adapter subscribes via popstate / hashchange)\n    window.dispatchEvent(new PopStateEvent(\"popstate\"));\n  }\n};\n\nconst subscribe = (mode, cb) => {\n  const evt = isHash(mode) ? \"hashchange\" : \"popstate\";\n  window.addEventListener(evt, cb);\n  return () => window.removeEventListener(evt, cb);\n};\n\n// Build href: the URL the host would land on for each target.\nconst hrefFor = (mode, prefix, args) => {\n  if (!prefix) return null;\n  const arg = args == null ? \"\" : typeof args === \"object\" ? \"\" : String(args);\n  const tail = typeof args === \"object\" && args && Object.keys(args).length > 0\n    ? `?${qs.stringify(args, { arrayFormat: \"none\" })}`\n    : \"\";\n  const url = `${prefix}${arg}${tail}`;\n  return isHash(mode) ? `#${url}` : url;\n};\n\nconst navigate = (mode, navigation, prefix, args) => {\n  if (!prefix) return;\n  if (navigation === \"reload\") {\n    // Force a real browser navigation. hrefFor builds the same URL the\n    // adapter would render in href= attributes, so the imperative and\n    // anchor paths land on identical URLs.\n    const url = hrefFor(mode, prefix, args);\n    if (url != null && typeof window !== \"undefined\") {\n      window.location.assign(url);\n    }\n    return;\n  }\n  // Default \"spa\" behaviour: pushState + popstate so an SPA host re-renders.\n  let path = prefix;\n  let search = null;\n  if (typeof args === \"string\" || typeof args === \"number\") {\n    path = `${prefix}${args}`;\n  } else if (args && typeof args === \"object\") {\n    search = args;\n  }\n  writeLocation(mode, path, search);\n};\n\nconst buildNavProps = (mode, navigation, paths) => ({\n  hrefForTaxon:  (id) => hrefFor(mode, paths.taxon, id),\n  hrefForTree:   (a)  => hrefFor(mode, paths.tree, a),\n  hrefForSearch: (a)  => hrefFor(mode, paths.search, a),\n  hrefForSource: (id) => hrefFor(mode, paths.source, id),\n\n  onNavigateToTaxon:  (id) => navigate(mode, navigation, paths.taxon, id),\n  onNavigateToTree:   (a)  => navigate(mode, navigation, paths.tree, a),\n  onNavigateToSearch: (a)  => navigate(mode, navigation, paths.search, a),\n  onNavigateToSource: (id) => navigate(mode, navigation, paths.source, id),\n});\n\n// Extract the last path segment after a prefix, ignoring trailing slash.\nconst lastSegmentAfter = (path, prefix) => {\n  if (!prefix) return undefined;\n  if (!path.startsWith(prefix)) {\n    // Allow matching when the host wraps in a base path; fall back to\n    // \"anything after the prefix substring\".\n    const i = path.indexOf(prefix);\n    if (i < 0) return undefined;\n    return path.slice(i + prefix.length).split(\"/\").filter(Boolean).pop();\n  }\n  return path.slice(prefix.length).split(\"/\").filter(Boolean).pop();\n};\n\nexport function withRouting(Component, options) {\n  const { kind, mode = \"path\", navigation = \"spa\", paths = {} } = options;\n\n  const Wrapped = (props) => {\n    const [tick, setTick] = useState(0);\n    useEffect(() => subscribe(mode, () => setTick((t) => t + 1)), []);\n\n    const { path, search } = readLocationKind(mode);\n\n    const navProps = useMemo(() => buildNavProps(mode, navigation, paths), []);\n\n    // Controlled identifier per kind.\n    let extra = {};\n    if (kind === \"taxon\") {\n      extra.taxonKey = lastSegmentAfter(path, paths.taxon);\n    } else if (kind === \"source\") {\n      extra.sourceDatasetKey = lastSegmentAfter(path, paths.source);\n    } else if (kind === \"taxonBreakdown\") {\n      extra.taxonId = lastSegmentAfter(path, paths.taxonBreakdown);\n    } else if (kind === \"taxonDistribution\") {\n      extra.taxonId = lastSegmentAfter(path, paths.taxonDistribution);\n    } else if (kind === \"bibtex\") {\n      extra.sourceDatasetKey = lastSegmentAfter(path, paths.bibtex);\n    } else if (kind === \"tree\") {\n      const parsed = qs.parse(search);\n      extra.expandedTaxonKey = parsed.taxonKey || undefined;\n      extra.onExpandedTaxonKeyChange = useCallback((id) => {\n        const cur = readLocationKind(mode);\n        const next = qs.parse(cur.search);\n        if (id) next.taxonKey = id;\n        else delete next.taxonKey;\n        writeLocation(mode, cur.path || paths.tree || \"/\", next);\n      }, []);\n    } else if (kind === \"search\") {\n      const parsed = qs.parse(search, { arrayFormat: \"none\" });\n      extra.filters = parsed;\n      extra.onFiltersChange = useCallback((filters) => {\n        const cur = readLocationKind(mode);\n        writeLocation(mode, cur.path || paths.search || \"/\", filters);\n      }, []);\n    }\n    // sourceList: no controlled identifier; 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