col-browser 2.0.0 → 2.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +17 -0
- package/es/bibtex.js +8 -0
- package/es/bibtex.js.map +1 -0
- package/es/chunks/AntdIcon-B1nMlqyh.js +984 -0
- package/es/chunks/AntdIcon-B1nMlqyh.js.map +1 -0
- package/es/chunks/BibTex-BqzD3qLB.js +13 -0
- package/es/chunks/BibTex-BqzD3qLB.js.map +1 -0
- package/es/chunks/DatasetCitation-bkPmDDYB.js +119 -0
- package/es/chunks/DatasetCitation-bkPmDDYB.js.map +1 -0
- package/es/chunks/DatasetlogoWithFallback-CbP7vRs_.js +823 -0
- package/es/chunks/DatasetlogoWithFallback-CbP7vRs_.js.map +1 -0
- package/es/chunks/Distributions-DDYEbGhW.js +1110 -0
- package/es/chunks/Distributions-DDYEbGhW.js.map +1 -0
- package/es/chunks/ErrorMsg-K8k5PPTp.js +26 -0
- package/es/chunks/ErrorMsg-K8k5PPTp.js.map +1 -0
- package/es/chunks/LinkOutlined-2IkQWTV7.js +22 -0
- package/es/chunks/LinkOutlined-2IkQWTV7.js.map +1 -0
- package/es/chunks/MergedDataBadge-DsTsn5Xu.js +134 -0
- package/es/chunks/MergedDataBadge-DsTsn5Xu.js.map +1 -0
- package/es/chunks/MetricsPresentation-U_CO8JoH.js +66 -0
- package/es/chunks/MetricsPresentation-U_CO8JoH.js.map +1 -0
- package/es/chunks/TaxonBreakdown-BshFaQql.js +205 -0
- package/es/chunks/TaxonBreakdown-BshFaQql.js.map +1 -0
- package/es/chunks/config-BPRXv9x8.js +31 -0
- package/es/chunks/config-BPRXv9x8.js.map +1 -0
- package/es/chunks/dataset-DvQG4NjA.js +30 -0
- package/es/chunks/dataset-DvQG4NjA.js.map +1 -0
- package/es/chunks/enumeration-yDQXSZsf.js +12 -0
- package/es/chunks/enumeration-yDQXSZsf.js.map +1 -0
- package/es/chunks/index-CNK3JADR.js +95 -0
- package/es/chunks/index-CNK3JADR.js.map +1 -0
- package/es/chunks/jsx-runtime-BzflLqGi.js +283 -0
- package/es/chunks/jsx-runtime-BzflLqGi.js.map +1 -0
- package/es/chunks/router-CssZk5qZ.js +109 -0
- package/es/chunks/router-CssZk5qZ.js.map +1 -0
- package/es/chunks/sector-BnVzMnMO.js +9 -0
- package/es/chunks/sector-BnVzMnMO.js.map +1 -0
- package/es/chunks/withDatasetKey-BgMY05XE.js +48 -0
- package/es/chunks/withDatasetKey-BgMY05XE.js.map +1 -0
- package/es/col-browser.css +1 -1
- package/es/index.js +18 -7964
- package/es/index.js.map +1 -1
- package/es/routing.js +5 -0
- package/es/routing.js.map +1 -0
- package/es/search.js +803 -0
- package/es/search.js.map +1 -0
- package/es/sourceDataset.js +453 -0
- package/es/sourceDataset.js.map +1 -0
- package/es/sourceDatasetList.js +366 -0
- package/es/sourceDatasetList.js.map +1 -0
- package/es/taxon.js +1643 -0
- package/es/taxon.js.map +1 -0
- package/es/taxonBreakdown.js +42 -0
- package/es/taxonBreakdown.js.map +1 -0
- package/es/taxonDistribution.js +48 -0
- package/es/taxonDistribution.js.map +1 -0
- package/es/tree.js +821 -0
- package/es/tree.js.map +1 -0
- package/package.json +51 -9
- package/types/bibtex.d.ts +1 -0
- package/types/index.d.ts +158 -0
- package/types/routing.d.ts +1 -0
- package/types/search.d.ts +1 -0
- package/types/sourceDataset.d.ts +1 -0
- package/types/sourceDatasetList.d.ts +1 -0
- package/types/taxon.d.ts +1 -0
- package/types/taxonBreakdown.d.ts +1 -0
- package/types/taxonDistribution.d.ts +1 -0
- package/types/tree.d.ts +1 -0
- package/umd/col-browser.js +20478 -27048
- package/umd/col-browser.js.map +1 -1
- package/umd/col-browser.min.js +5 -13
- package/umd/col-browser.min.js.map +1 -1
package/es/tree.js
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var c = (C, y, e) => q(C, typeof y != "symbol" ? y + "" : y, e);
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import { a as J } from "./chunks/withDatasetKey-BgMY05XE.js";
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import { c as T, w as Q } from "./chunks/config-BPRXv9x8.js";
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import { j as t } from "./chunks/jsx-runtime-BzflLqGi.js";
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import j, { createContext as X } from "react";
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import { Popover as Y, Divider as ee, Spin as M, Tag as te, Alert as b, Skeleton as se, Tree as ae, Button as oe, Row as ie, Col as w, Checkbox as $ } from "antd";
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import { sortBy as N, get as m, isUndefined as I, flatten as ne, isArray as A } from "lodash-es";
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import { L, c as D, R as B, s as re, b as le } from "./chunks/router-CssZk5qZ.js";
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import S from "dataloader";
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import { c as R, b as U, g as de } from "./chunks/dataset-DvQG4NjA.js";
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import { g as pe } from "./chunks/sector-BnVzMnMO.js";
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import { C as F, N as ue } from "./chunks/DatasetCitation-bkPmDDYB.js";
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publisherLoader: null
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datasetLoader: new S((y) => U(y, C)),
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publisherLoader: new S(
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(y) => R(y, C)
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)
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});
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class W extends j.Component {
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constructor(e) {
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super(e);
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// Returns the shared cache from TreeCacheContext if available, or a
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// throwaway local DataLoader so the popover still works even if context
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// doesn't reach this instance (which used to leave the spinner stuck
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// because getData early-returned with no loading state set).
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c(this, "getDatasetLoader", () => {
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var s;
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const { datasetKey: e } = this.props;
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return (s = this.context) != null && s.datasetLoader ? this.context.datasetLoader : (this._localDatasetLoader || (this._localDatasetLoader = new S(
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(o) => U(o, e)
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)), this._localDatasetLoader);
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});
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c(this, "getPublisherLoader", () => {
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var s;
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const { datasetKey: e } = this.props;
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return (s = this.context) != null && s.publisherLoader ? this.context.publisherLoader : (this._localPublisherLoader || (this._localPublisherLoader = new S(
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)), this._localPublisherLoader);
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});
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c(this, "componentDidMount", () => {
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const { sourceDatasetKeys: e } = this.props;
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e && e.length < 4 && this.setState({ showInNode: !0 }, this.getData);
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});
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c(this, "getData", () => {
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const { sourceDatasetKeys: e } = this.props;
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if (!(e != null && e.length)) return;
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this.setState({ loading: !0 });
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const s = this.getDatasetLoader();
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Promise.all(
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e.map((o) => s.load(o).catch(() => null))
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this.setState({ data: N(o, ["alias"]), loading: !1 });
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this.setState({ data: [], loading: !1 });
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});
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c(this, "getPublisherData", () => {
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const { publisherDatasetKeys: e } = this.props;
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if (!e) return;
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const s = this.getPublisherLoader();
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Promise.all(
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Object.keys(e).map(
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(o) => s.load(o).then((r) => ({
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...r,
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datasets: e[o]
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})).catch(() => null)
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)
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).then((o) => {
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this.setState({ publishers: N(o.filter(Boolean), ["alias"]) });
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this.setState({ publishers: [] });
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});
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c(this, "render", () => {
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const { data: e, showInNode: s, popOverVisible: o, loading: r } = this.state, { taxon: l, datasetKey: h } = this.props, i = { color: "orange", fontSize: "11px" }, u = (a) => `${T.clbPortal}/dataset/${h}/publisher/${a}`;
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return s ? e.filter((a) => !!a).map((a, d) => /* @__PURE__ */ t.jsx(
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L,
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{
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to: "source",
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className: "col-tree-data-source",
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style: i,
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children: (d ? ", " : "") + (a.alias || a.key)
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},
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a.key
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)) : /* @__PURE__ */ t.jsx("div", { style: { display: "inline" }, id: `taxon_sources_${l.id}`, children: /* @__PURE__ */ t.jsx(
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Y,
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{
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getPopupContainer: () => document.getElementById(`taxon_sources_${l.id}`),
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children: /* @__PURE__ */ t.jsx(M, { size: "small" })
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{
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className: "col-tree-data-source",
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style: i,
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children: (d ? ", " : "") + (a.alias || a.key)
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a.key
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this.state.publishers && this.state.publishers.length > 0 && /* @__PURE__ */ t.jsxs("div", { style: { marginTop: "12px" }, children: [
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(d ? ", " : "") + (a.alias || a.id),
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(f = a.datasets) != null && f.length ? ` (${a.datasets.length.toLocaleString("en-GB")})` : ""
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a.id
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title: /* @__PURE__ */ t.jsxs("div", { style: { padding: "4px 0" }, children: [
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/* @__PURE__ */ t.jsx("span", { style: { fontWeight: 500 }, children: "Sources for " }),
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onOpenChange: (a) => this.setState({ popOverVisible: a }, () => {
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role: "button",
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tabIndex: 0,
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style: { cursor: "pointer", color: "orange", fontSize: "11px" },
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onClick: (a) => a.preventDefault(),
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children: "Multiple sources"
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)
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this.state = {
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c(W, "contextType", P);
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const H = j.createContext();
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class k extends j.Component {
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constructor(e) {
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super(e);
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c(this, "rankIsAboveSpecies", (e) => this.props.rank.indexOf(e) < this.props.rank.indexOf("species"));
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c(this, "render", () => {
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const {
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taxon: e,
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to: "source",
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style: i ? { fontWeight: "bold" } : null,
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className: "col-tree-data-source",
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children: [
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m(h, "alias") || s.subjectDatasetKey,
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i && ", "
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]
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}
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)
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] }),
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a && i && /* @__PURE__ */ t.jsxs(j.Fragment, { children: [
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{
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sourceDatasetKeys: o,
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publisherDatasetKeys: r,
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taxon: e,
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datasetKey: l
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}
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)
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style: {},
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provisional: this.props.taxon.status === "provisionally accepted",
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loading: !1
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};
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}
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}
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const K = 1e3;
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constructor(e) {
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super(e);
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c(this, "onClick", () => {
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this.setState(
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{ loading: !0 },
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() => this.props.onClick().then(() => this.setState({ loading: !1 }))
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);
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});
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c(this, "render", () => {
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const { loading: e } = this.state;
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return /* @__PURE__ */ t.jsxs(j.Fragment, { children: [
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e && /* @__PURE__ */ t.jsx(M, {}),
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!e && /* @__PURE__ */ t.jsx("a", { onClick: this.onClick, children: /* @__PURE__ */ t.jsx("strong", { children: "Load more..." }) })
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] });
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});
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}
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}
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class V extends j.Component {
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constructor(e) {
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super(e);
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c(this, "componentDidMount", () => {
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const { datasetKey: e } = this.props;
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this.loadRoot(), this.sectorLoader = new S(
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(o) => pe(o, e)
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), this.getRank();
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const { treeRef: s } = this.props;
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s(this);
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});
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c(this, "componentDidUpdate", (e) => {
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(e.defaultExpandKey !== this.props.defaultExpandKey || e.hideExtinct !== this.props.hideExtinct || e.insertPlaceholder !== this.props.insertPlaceholder) && this.reloadRoot();
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});
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c(this, "getRank", () => {
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D(`${T.dataApi}vocab/rank`).then(
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(e) => this.setState({ rank: e.data.map((s) => s.name) })
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);
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});
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c(this, "reloadRoot", () => this.setState(
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{
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rootLoading: !0,
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treeData: [],
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loadedKeys: [],
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rootTotal: 0,
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error: null,
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nodeNotFoundErr: null
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},
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this.loadRoot
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));
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c(this, "loadRoot", async () => {
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const {
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showSourceTaxon: e,
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+
datasetKey: s,
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hideExtinct: o,
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+
insertPlaceholder: r,
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|
+
type: l,
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|
+
expandedTaxonKey: h
|
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308
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+
} = this.props, i = h, { defaultTaxonKey: u } = this.props;
|
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|
+
return this.setState({ rootLoading: !0, treeData: [] }), D(
|
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310
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+
`${T.dataApi}dataset/${s}/tree?projectKey=${s}${l ? "&type=" + l : ""}&limit=${K}&offset=${this.state.treeData.length}${o ? "&extinct=false&extinct=" : ""}${r ? "&insertPlaceholder=true" : ""}`
|
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311
|
+
).then(this.decorateWithSectorsAndDataset).then((a) => {
|
|
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|
+
const d = a.data.result || [], f = a.data.total, x = d.map((p) => {
|
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+
let n = {
|
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314
|
+
taxon: p,
|
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315
|
+
key: p.id,
|
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|
+
datasetKey: s,
|
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|
+
childCount: p.childCount,
|
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|
+
isLeaf: p.childCount === 0,
|
|
319
|
+
childOffset: 0
|
|
320
|
+
};
|
|
321
|
+
return n.title = /* @__PURE__ */ t.jsx(
|
|
322
|
+
k,
|
|
323
|
+
{
|
|
324
|
+
taxon: p,
|
|
325
|
+
datasetKey: s,
|
|
326
|
+
showSourceTaxon: e,
|
|
327
|
+
reloadChildren: () => this.fetchChildPage(n, !0),
|
|
328
|
+
rank: this.state.rank
|
|
329
|
+
}
|
|
330
|
+
), n.ref = n, n;
|
|
331
|
+
});
|
|
332
|
+
this.setState(
|
|
333
|
+
{
|
|
334
|
+
rootTotal: f,
|
|
335
|
+
rootLoading: !1,
|
|
336
|
+
treeData: [...this.state.treeData, ...x],
|
|
337
|
+
expandedKeys: x.length < 10 ? x.map((p) => p.taxon.id).filter((p) => p === "CS5HF") : [],
|
|
338
|
+
error: null
|
|
339
|
+
},
|
|
340
|
+
() => {
|
|
341
|
+
if (i)
|
|
342
|
+
return this.expandToTaxon(i);
|
|
343
|
+
if (u)
|
|
344
|
+
return this.expandToTaxon(u);
|
|
345
|
+
}
|
|
346
|
+
), x.length === 1 && this.fetchChildPage(x[x.length - 1]);
|
|
347
|
+
}).catch((a) => {
|
|
348
|
+
this.setState({
|
|
349
|
+
treeData: [],
|
|
350
|
+
rootLoading: !1,
|
|
351
|
+
expandedKeys: [],
|
|
352
|
+
error: a
|
|
353
|
+
});
|
|
354
|
+
});
|
|
355
|
+
});
|
|
356
|
+
c(this, "expandToTaxon", async (e) => {
|
|
357
|
+
const {
|
|
358
|
+
showSourceTaxon: s,
|
|
359
|
+
datasetKey: o,
|
|
360
|
+
hideExtinct: r,
|
|
361
|
+
type: l
|
|
362
|
+
} = this.props;
|
|
363
|
+
this.setState({
|
|
364
|
+
rootLoading: !0
|
|
365
|
+
/* , treeData: [] */
|
|
366
|
+
});
|
|
367
|
+
const { data: h } = await D(
|
|
368
|
+
`${T.dataApi}dataset/${o}/tree/${e}?projectKey=${o}&insertPlaceholder=true${l ? "&type=" + l : ""}${r ? "&extinct=false" : ""}`
|
|
369
|
+
).then(
|
|
370
|
+
(p) => this.decorateWithSectorsAndDataset({
|
|
371
|
+
data: { result: p.data }
|
|
372
|
+
}).then(() => p)
|
|
373
|
+
);
|
|
374
|
+
if (h.length === 0)
|
|
375
|
+
return this.setState(
|
|
376
|
+
{
|
|
377
|
+
error: {
|
|
378
|
+
message: `No classification found for Taxon ID: ${e}`
|
|
379
|
+
}
|
|
380
|
+
},
|
|
381
|
+
this.loadRoot
|
|
382
|
+
);
|
|
383
|
+
const i = h[h.length - 1];
|
|
384
|
+
let u = {
|
|
385
|
+
taxon: i,
|
|
386
|
+
key: i.id,
|
|
387
|
+
datasetKey: o,
|
|
388
|
+
childCount: i.childCount,
|
|
389
|
+
isLeaf: i.childCount === 0,
|
|
390
|
+
childOffset: 0
|
|
391
|
+
};
|
|
392
|
+
u.title = /* @__PURE__ */ t.jsx(
|
|
393
|
+
k,
|
|
394
|
+
{
|
|
395
|
+
taxon: i,
|
|
396
|
+
datasetKey: o,
|
|
397
|
+
showSourceTaxon: s,
|
|
398
|
+
rank: this.state.rank,
|
|
399
|
+
reloadChildren: () => this.fetchChildPage(u, !0)
|
|
400
|
+
}
|
|
401
|
+
), u.ref = u;
|
|
402
|
+
const a = u;
|
|
403
|
+
for (let p = h.length - 2; p >= 0; p--) {
|
|
404
|
+
const n = h[p], g = {
|
|
405
|
+
taxon: n,
|
|
406
|
+
key: n.id,
|
|
407
|
+
datasetKey: o,
|
|
408
|
+
childCount: n.childCount,
|
|
409
|
+
isLeaf: n.childCount === 0,
|
|
410
|
+
childOffset: 0
|
|
411
|
+
};
|
|
412
|
+
g.ref = g, g.title = /* @__PURE__ */ t.jsx(
|
|
413
|
+
k,
|
|
414
|
+
{
|
|
415
|
+
taxon: n,
|
|
416
|
+
datasetKey: o,
|
|
417
|
+
showSourceTaxon: s,
|
|
418
|
+
rank: this.state.rank,
|
|
419
|
+
reloadChildren: () => this.fetchChildPage(g, !0)
|
|
420
|
+
}
|
|
421
|
+
), u.children = [g], u = g;
|
|
422
|
+
}
|
|
423
|
+
const { treeData: d } = this.state;
|
|
424
|
+
var f = d.findIndex((p) => p.key == a.key);
|
|
425
|
+
d[f] = a;
|
|
426
|
+
const x = [...h.map((p) => p.id).reverse()];
|
|
427
|
+
this.setState(
|
|
428
|
+
{ treeData: d },
|
|
429
|
+
() => this.reloadLoadedKeys(x, e)
|
|
430
|
+
);
|
|
431
|
+
});
|
|
432
|
+
c(this, "fetchChildPage", async (e, s, o) => {
|
|
433
|
+
const {
|
|
434
|
+
showSourceTaxon: r,
|
|
435
|
+
datasetKey: l,
|
|
436
|
+
hideExtinct: h,
|
|
437
|
+
insertPlaceholder: i,
|
|
438
|
+
type: u
|
|
439
|
+
} = this.props, { treeData: a } = this.state;
|
|
440
|
+
m(e, "childCount");
|
|
441
|
+
const d = K, f = m(e, "childOffset"), x = await D(
|
|
442
|
+
`${T.dataApi}dataset/${l}/tree/${e.taxon.id}/children?limit=${d}&offset=${f}&projectKey=${l}${u ? "&type=" + u : ""}${h ? "&extinct=false" : ""}${i ? "&insertPlaceholder=true" : ""}`
|
|
443
|
+
);
|
|
444
|
+
await this.decorateWithSectorsAndDataset(x);
|
|
445
|
+
const p = x.data.result ? x.data.result.map((n) => {
|
|
446
|
+
let g = {
|
|
447
|
+
taxon: n,
|
|
448
|
+
key: n.id,
|
|
449
|
+
datasetKey: l,
|
|
450
|
+
childCount: n.childCount,
|
|
451
|
+
isLeaf: n.childCount === 0,
|
|
452
|
+
childOffset: 0,
|
|
453
|
+
parent: e,
|
|
454
|
+
name: n.name
|
|
455
|
+
};
|
|
456
|
+
return g.title = /* @__PURE__ */ t.jsx(
|
|
457
|
+
k,
|
|
458
|
+
{
|
|
459
|
+
taxon: n,
|
|
460
|
+
datasetKey: l,
|
|
461
|
+
showSourceTaxon: r,
|
|
462
|
+
rank: this.state.rank,
|
|
463
|
+
reloadChildren: () => this.fetchChildPage(g, !0)
|
|
464
|
+
}
|
|
465
|
+
), g.ref = g, g;
|
|
466
|
+
}) : [];
|
|
467
|
+
if (e.children = e.children && f !== 0 && !s ? [...e.children, ...p] : p, x.data.last && e.childCount > e.children.length && (e.childCount = e.children.length), !x.data.last) {
|
|
468
|
+
const n = () => (e.childOffset += K, e.children[e.children.length - 1].key === "__loadMoreBTN__" && (e.children = e.children.slice(0, -1)), this.fetchChildPage(e, !1));
|
|
469
|
+
e.children = [
|
|
470
|
+
...e.children,
|
|
471
|
+
{
|
|
472
|
+
title: /* @__PURE__ */ t.jsx(
|
|
473
|
+
fe,
|
|
474
|
+
{
|
|
475
|
+
onClick: n
|
|
476
|
+
},
|
|
477
|
+
"__loadMoreBTN__"
|
|
478
|
+
),
|
|
479
|
+
key: "__loadMoreBTN__",
|
|
480
|
+
childCount: 0,
|
|
481
|
+
isLeaf: !0
|
|
482
|
+
}
|
|
483
|
+
];
|
|
484
|
+
}
|
|
485
|
+
o || this.setState({
|
|
486
|
+
treeData: [...a],
|
|
487
|
+
loadedKeys: [.../* @__PURE__ */ new Set([...this.state.loadedKeys, e.key])]
|
|
488
|
+
});
|
|
489
|
+
});
|
|
490
|
+
c(this, "decorateWithSectorsAndDataset", (e) => e.data.result ? Promise.all(
|
|
491
|
+
e.data.result.filter((s) => !!s.sectorDatasetKey).map(
|
|
492
|
+
(s) => this.datasetLoader.load(s.sectorDatasetKey).then(
|
|
493
|
+
(o) => s.sector = {
|
|
494
|
+
id: s.sectorKey,
|
|
495
|
+
subjectDatasetKey: s.sectorDatasetKey,
|
|
496
|
+
dataset: o
|
|
497
|
+
}
|
|
498
|
+
)
|
|
499
|
+
)
|
|
500
|
+
).then(() => e) : e);
|
|
501
|
+
c(this, "onLoadData", (e, s = !1) => (s && (e.childOffset = 0), this.fetchChildPage(e.ref, s)));
|
|
502
|
+
c(this, "findNode", (e, s) => {
|
|
503
|
+
let o = null;
|
|
504
|
+
if (o = s.find((r) => m(r, "taxon.id") === e), o)
|
|
505
|
+
return o;
|
|
506
|
+
{
|
|
507
|
+
const r = s.map((h) => m(h, "children") || []), l = ne(r);
|
|
508
|
+
return l.length === 0 ? null : this.findNode(e, l);
|
|
509
|
+
}
|
|
510
|
+
});
|
|
511
|
+
c(this, "pageThroughChildrenUntilTaxonFound", async (e, s) => {
|
|
512
|
+
let o;
|
|
513
|
+
for (; !o && e.children.length < e.childCount; )
|
|
514
|
+
e.childOffset += K, e.children[e.children.length - 1].key === "__loadMoreBTN__" && (e.children = e.children.slice(0, -1)), await this.fetchChildPage(e, !1, !0), o = this.findNode(s, e.children);
|
|
515
|
+
return o || (o = e.children.find(
|
|
516
|
+
(r) => m(r, "taxon.id") ? r.taxon.id.indexOf("incertae-sedis") > -1 : !1
|
|
517
|
+
)), o;
|
|
518
|
+
});
|
|
519
|
+
c(this, "reloadLoadedKeys", async (e, s, o = !0) => {
|
|
520
|
+
this.setState({ rootLoading: !0 });
|
|
521
|
+
const { loadedKeys: r } = this.state;
|
|
522
|
+
let { treeData: l } = this.state;
|
|
523
|
+
const h = s ? this.findNode(s, l) : null, i = e ? [...e] : [...r];
|
|
524
|
+
for (let a = 0; a < i.length; a++) {
|
|
525
|
+
let d = this.findNode(i[a], l);
|
|
526
|
+
if (!d && h && i[a - 1]) {
|
|
527
|
+
const f = this.findNode(i[a - 1], l);
|
|
528
|
+
f && A(m(f, "children")) && f.children.length > 0 && (d = await this.pageThroughChildrenUntilTaxonFound(
|
|
529
|
+
f,
|
|
530
|
+
i[a]
|
|
531
|
+
), d ? i.splice(a, 0, d.taxon.id) : this.setState(
|
|
532
|
+
{
|
|
533
|
+
nodeNotFoundErr: /* @__PURE__ */ t.jsxs("span", { children: [
|
|
534
|
+
"Cannot find taxon ",
|
|
535
|
+
s,
|
|
536
|
+
" in tree 😥"
|
|
537
|
+
] }),
|
|
538
|
+
rootLoading: !1
|
|
539
|
+
}
|
|
540
|
+
/* ,
|
|
541
|
+
() => {
|
|
542
|
+
if (
|
|
543
|
+
this.props.treeType === "CATALOGUE" &&
|
|
544
|
+
typeof this.props.addMissingTargetKey === "function"
|
|
545
|
+
) {
|
|
546
|
+
this.props.addMissingTargetKey(expandKey);
|
|
547
|
+
}
|
|
548
|
+
} */
|
|
549
|
+
));
|
|
550
|
+
}
|
|
551
|
+
if (d) {
|
|
552
|
+
await this.fetchChildPage(d, !0, !0);
|
|
553
|
+
let f = d.children.find(
|
|
554
|
+
(x) => m(x, "taxon.id") === m(h, "taxon.id")
|
|
555
|
+
);
|
|
556
|
+
h && a === i.length - 2 && m(d, "taxon.id") !== m(h, "taxon.id") && A(d.children) && !f && d.children.length < d.childCount && (f = await this.pageThroughChildrenUntilTaxonFound(
|
|
557
|
+
d,
|
|
558
|
+
m(h, "taxon.id")
|
|
559
|
+
), f ? this.setState({ treeData: [...this.state.treeData] }, () => {
|
|
560
|
+
setTimeout(() => {
|
|
561
|
+
document.getElementById(s).scrollIntoView({ behavior: "smooth", block: "center" });
|
|
562
|
+
}, 100);
|
|
563
|
+
}) : this.setState(
|
|
564
|
+
{
|
|
565
|
+
nodeNotFoundErr: /* @__PURE__ */ t.jsxs("span", { children: [
|
|
566
|
+
"Cannot find taxon ",
|
|
567
|
+
s,
|
|
568
|
+
" in tree 😥"
|
|
569
|
+
] }),
|
|
570
|
+
rootLoading: !1
|
|
571
|
+
},
|
|
572
|
+
() => {
|
|
573
|
+
this.props.treeType === "CATALOGUE" && typeof this.props.addMissingTargetKey == "function" && this.props.addMissingTargetKey(s);
|
|
574
|
+
}
|
|
575
|
+
));
|
|
576
|
+
}
|
|
577
|
+
}
|
|
578
|
+
const u = { loadedKeys: i, rootLoading: !1 };
|
|
579
|
+
o && (u.expandedKeys = i), this.setState(u, () => {
|
|
580
|
+
s && setTimeout(() => {
|
|
581
|
+
document.getElementById(s).scrollIntoView({ behavior: "smooth", block: "center" });
|
|
582
|
+
}, 100);
|
|
583
|
+
});
|
|
584
|
+
});
|
|
585
|
+
this.state = {
|
|
586
|
+
rootLoading: !0,
|
|
587
|
+
treeData: [],
|
|
588
|
+
loadedKeys: [],
|
|
589
|
+
expandedKeys: [],
|
|
590
|
+
rootTotal: 0,
|
|
591
|
+
error: null,
|
|
592
|
+
nodeNotFoundErr: null,
|
|
593
|
+
rank: []
|
|
594
|
+
}, this.treeRef = j.createRef();
|
|
595
|
+
}
|
|
596
|
+
// datasetLoader comes from the shared TreeCacheContext so multiple tree
|
|
597
|
+
// nodes (and TaxonSources instances) share one in-memory cache instead
|
|
598
|
+
// of each re-fetching the same source datasets.
|
|
599
|
+
get datasetLoader() {
|
|
600
|
+
return this.context.datasetLoader;
|
|
601
|
+
}
|
|
602
|
+
render() {
|
|
603
|
+
const {
|
|
604
|
+
error: e,
|
|
605
|
+
rootTotal: s,
|
|
606
|
+
rootLoading: o,
|
|
607
|
+
treeData: r,
|
|
608
|
+
defaultExpandAll: l,
|
|
609
|
+
nodeNotFoundErr: h,
|
|
610
|
+
loadedKeys: i,
|
|
611
|
+
expandedKeys: u
|
|
612
|
+
} = this.state, { treeType: a, dataset: d, height: f, expandedTaxonKey: x } = this.props, p = x;
|
|
613
|
+
return /* @__PURE__ */ t.jsxs("div", { children: [
|
|
614
|
+
e && /* @__PURE__ */ t.jsx(j.Fragment, { children: m(e, "response.data.code") !== 404 ? /* @__PURE__ */ t.jsx(
|
|
615
|
+
b,
|
|
616
|
+
{
|
|
617
|
+
closable: !0,
|
|
618
|
+
onClose: () => this.setState({ error: null }),
|
|
619
|
+
style: { marginTop: "8px" },
|
|
620
|
+
message: /* @__PURE__ */ t.jsx(ce, { error: e }),
|
|
621
|
+
type: "error"
|
|
622
|
+
}
|
|
623
|
+
) : /* @__PURE__ */ t.jsx(
|
|
624
|
+
b,
|
|
625
|
+
{
|
|
626
|
+
closable: !0,
|
|
627
|
+
onClose: () => this.setState({ error: null }),
|
|
628
|
+
style: { marginTop: "8px" },
|
|
629
|
+
message: /* @__PURE__ */ t.jsx(
|
|
630
|
+
Custom404,
|
|
631
|
+
{
|
|
632
|
+
error: e,
|
|
633
|
+
treeType: a,
|
|
634
|
+
dataset: d,
|
|
635
|
+
loadRoot: this.loadRoot
|
|
636
|
+
}
|
|
637
|
+
),
|
|
638
|
+
type: "warning"
|
|
639
|
+
}
|
|
640
|
+
) }),
|
|
641
|
+
h && /* @__PURE__ */ t.jsx(
|
|
642
|
+
b,
|
|
643
|
+
{
|
|
644
|
+
closable: !0,
|
|
645
|
+
onClose: () => this.setState({ nodeNotFoundErr: null }),
|
|
646
|
+
style: { marginTop: "8px" },
|
|
647
|
+
message: h,
|
|
648
|
+
type: "warning"
|
|
649
|
+
}
|
|
650
|
+
),
|
|
651
|
+
o && /* @__PURE__ */ t.jsx(se, { paragraph: { rows: 10 }, active: !0 }),
|
|
652
|
+
!o && r.length > 0 && /* @__PURE__ */ t.jsx(
|
|
653
|
+
ae,
|
|
654
|
+
{
|
|
655
|
+
ref: this.treeRef,
|
|
656
|
+
defaultExpandAll: l,
|
|
657
|
+
loadData: this.onLoadData,
|
|
658
|
+
onLoad: (n) => this.setState({ loadedKeys: n }),
|
|
659
|
+
loadedKeys: i,
|
|
660
|
+
expandedKeys: u,
|
|
661
|
+
treeData: r,
|
|
662
|
+
filterTreeNode: (n) => n.key === p,
|
|
663
|
+
onExpand: (n, g) => {
|
|
664
|
+
this.setState({ expandedKeys: n }), this.props.onExpandedTaxonKeyChange && this.props.onExpandedTaxonKeyChange(
|
|
665
|
+
g.expanded ? g.node.key : null
|
|
666
|
+
);
|
|
667
|
+
}
|
|
668
|
+
}
|
|
669
|
+
),
|
|
670
|
+
!e && r.length < s && /* @__PURE__ */ t.jsxs(oe, { loading: o, onClick: this.loadRoot, children: [
|
|
671
|
+
"Load more",
|
|
672
|
+
" "
|
|
673
|
+
] })
|
|
674
|
+
] });
|
|
675
|
+
}
|
|
676
|
+
}
|
|
677
|
+
c(V, "contextType", P);
|
|
678
|
+
const xe = [
|
|
679
|
+
"infraspecific name",
|
|
680
|
+
"species",
|
|
681
|
+
"variety",
|
|
682
|
+
"form"
|
|
683
|
+
];
|
|
684
|
+
class z extends j.Component {
|
|
685
|
+
constructor(e) {
|
|
686
|
+
super(e);
|
|
687
|
+
c(this, "componentDidMount", async () => {
|
|
688
|
+
const { datasetKey: e, citation: s } = this.props;
|
|
689
|
+
if (s)
|
|
690
|
+
try {
|
|
691
|
+
const { data: o } = await de(e);
|
|
692
|
+
this.setState({ dataset: o });
|
|
693
|
+
} catch {
|
|
694
|
+
}
|
|
695
|
+
});
|
|
696
|
+
c(this, "render", () => {
|
|
697
|
+
const {
|
|
698
|
+
datasetKey: e,
|
|
699
|
+
defaultTaxonKey: s,
|
|
700
|
+
expandedTaxonKey: o,
|
|
701
|
+
onExpandedTaxonKeyChange: r,
|
|
702
|
+
showTreeOptions: l,
|
|
703
|
+
linkToSpeciesPage: h,
|
|
704
|
+
citation: i,
|
|
705
|
+
type: u,
|
|
706
|
+
insertPlaceholder: a = !0
|
|
707
|
+
} = this.props, { hideExtinct: d, dataset: f } = this.state, x = (n) => {
|
|
708
|
+
var _, v;
|
|
709
|
+
const g = m(n, "key");
|
|
710
|
+
if (!g) return;
|
|
711
|
+
const G = m(n, "rank");
|
|
712
|
+
if (h && xe.includes(G)) {
|
|
713
|
+
const E = (v = (_ = this.context) == null ? void 0 : _.taxon) == null ? void 0 : v.onNavigate;
|
|
714
|
+
E && E(g);
|
|
715
|
+
} else r && (r(g), this.treeRef && this.treeRef.reloadRoot && this.treeRef.reloadRoot());
|
|
716
|
+
}, p = () => {
|
|
717
|
+
r && r(null);
|
|
718
|
+
};
|
|
719
|
+
return /* @__PURE__ */ t.jsxs("div", { className: "catalogue-of-life", children: [
|
|
720
|
+
i === "top" && f && /* @__PURE__ */ t.jsx(F, { dataset: f }),
|
|
721
|
+
/* @__PURE__ */ t.jsx(P.Provider, { value: this.cache, children: /* @__PURE__ */ t.jsxs(H.Provider, { value: this.state, children: [
|
|
722
|
+
/* @__PURE__ */ t.jsxs(ie, { children: [
|
|
723
|
+
/* @__PURE__ */ t.jsx(w, { flex: "auto", children: /* @__PURE__ */ t.jsx(
|
|
724
|
+
ue,
|
|
725
|
+
{
|
|
726
|
+
hideExtinct: d,
|
|
727
|
+
datasetKey: e,
|
|
728
|
+
style: {
|
|
729
|
+
width: "100%",
|
|
730
|
+
paddingTop: "5px",
|
|
731
|
+
paddingBottom: "5px"
|
|
732
|
+
},
|
|
733
|
+
defaultTaxonKey: o || null,
|
|
734
|
+
onSelectName: x,
|
|
735
|
+
onResetSearch: p
|
|
736
|
+
}
|
|
737
|
+
) }),
|
|
738
|
+
l && /* @__PURE__ */ t.jsxs(w, { style: { paddingLeft: "8px" }, children: [
|
|
739
|
+
/* @__PURE__ */ t.jsx(
|
|
740
|
+
$,
|
|
741
|
+
{
|
|
742
|
+
onChange: ({ target: { checked: n } }) => {
|
|
743
|
+
this.setState({ showInfo: n });
|
|
744
|
+
},
|
|
745
|
+
children: "Source"
|
|
746
|
+
}
|
|
747
|
+
),
|
|
748
|
+
/* @__PURE__ */ t.jsx(
|
|
749
|
+
$,
|
|
750
|
+
{
|
|
751
|
+
defaultChecked: !1,
|
|
752
|
+
onChange: ({ target: { checked: n } }) => {
|
|
753
|
+
this.setState({ hideExtinct: n });
|
|
754
|
+
},
|
|
755
|
+
children: "Extant only"
|
|
756
|
+
}
|
|
757
|
+
)
|
|
758
|
+
] })
|
|
759
|
+
] }),
|
|
760
|
+
/* @__PURE__ */ t.jsx(
|
|
761
|
+
V,
|
|
762
|
+
{
|
|
763
|
+
insertPlaceholder: a,
|
|
764
|
+
hideExtinct: d,
|
|
765
|
+
datasetKey: e,
|
|
766
|
+
defaultTaxonKey: s,
|
|
767
|
+
expandedTaxonKey: o,
|
|
768
|
+
onExpandedTaxonKeyChange: r,
|
|
769
|
+
treeRef: (n) => this.treeRef = n,
|
|
770
|
+
type: u
|
|
771
|
+
}
|
|
772
|
+
)
|
|
773
|
+
] }) }),
|
|
774
|
+
i === "bottom" && f && /* @__PURE__ */ t.jsx(F, { dataset: f })
|
|
775
|
+
] });
|
|
776
|
+
});
|
|
777
|
+
re(this.props.auth), this.state = {
|
|
778
|
+
hideExtinct: !1,
|
|
779
|
+
showInfo: !1,
|
|
780
|
+
dataset: null
|
|
781
|
+
}, this.cache = O(this.props.datasetKey);
|
|
782
|
+
}
|
|
783
|
+
componentDidUpdate(e) {
|
|
784
|
+
e.datasetKey !== this.props.datasetKey && (this.cache = O(this.props.datasetKey));
|
|
785
|
+
}
|
|
786
|
+
}
|
|
787
|
+
c(z, "contextType", B);
|
|
788
|
+
function ge({
|
|
789
|
+
datasetKey: C,
|
|
790
|
+
defaultTaxonKey: y,
|
|
791
|
+
expandedTaxonKey: e,
|
|
792
|
+
onExpandedTaxonKeyChange: s,
|
|
793
|
+
showTreeOptions: o,
|
|
794
|
+
linkToSpeciesPage: r,
|
|
795
|
+
citation: l,
|
|
796
|
+
type: h,
|
|
797
|
+
insertPlaceholder: i,
|
|
798
|
+
auth: u,
|
|
799
|
+
...a
|
|
800
|
+
}) {
|
|
801
|
+
return /* @__PURE__ */ t.jsx(B.Provider, { value: le(a), children: /* @__PURE__ */ t.jsx(
|
|
802
|
+
z,
|
|
803
|
+
{
|
|
804
|
+
datasetKey: C,
|
|
805
|
+
defaultTaxonKey: y,
|
|
806
|
+
expandedTaxonKey: e,
|
|
807
|
+
onExpandedTaxonKeyChange: s,
|
|
808
|
+
showTreeOptions: o,
|
|
809
|
+
linkToSpeciesPage: r,
|
|
810
|
+
citation: l,
|
|
811
|
+
type: h,
|
|
812
|
+
insertPlaceholder: i,
|
|
813
|
+
auth: u
|
|
814
|
+
}
|
|
815
|
+
) });
|
|
816
|
+
}
|
|
817
|
+
const Ee = Q(J(ge));
|
|
818
|
+
export {
|
|
819
|
+
Ee as Tree
|
|
820
|
+
};
|
|
821
|
+
//# sourceMappingURL=tree.js.map
|