cognitive-core 0.1.0 → 0.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (972) hide show
  1. package/.claude/settings.json +88 -0
  2. package/.claude/settings.local.json +11 -0
  3. package/.entire/settings.json +4 -0
  4. package/CLAUDE.md +233 -0
  5. package/README.md +841 -255
  6. package/dist/atlas.d.ts +150 -12
  7. package/dist/atlas.d.ts.map +1 -1
  8. package/dist/atlas.js +391 -31
  9. package/dist/atlas.js.map +1 -1
  10. package/dist/bin/cli-utils.d.ts +37 -0
  11. package/dist/bin/cli-utils.d.ts.map +1 -0
  12. package/dist/bin/cli-utils.js +176 -0
  13. package/dist/bin/cli-utils.js.map +1 -0
  14. package/dist/bin/cognitive-core.d.ts +2 -12
  15. package/dist/bin/cognitive-core.d.ts.map +1 -1
  16. package/dist/bin/cognitive-core.js +76 -351
  17. package/dist/bin/cognitive-core.js.map +1 -1
  18. package/dist/bin/commands/kb.d.ts +6 -0
  19. package/dist/bin/commands/kb.d.ts.map +1 -0
  20. package/dist/bin/commands/kb.js +240 -0
  21. package/dist/bin/commands/kb.js.map +1 -0
  22. package/dist/bin/commands/learn.d.ts +6 -0
  23. package/dist/bin/commands/learn.d.ts.map +1 -0
  24. package/dist/bin/commands/learn.js +91 -0
  25. package/dist/bin/commands/learn.js.map +1 -0
  26. package/dist/bin/commands/legacy.d.ts +12 -0
  27. package/dist/bin/commands/legacy.d.ts.map +1 -0
  28. package/dist/bin/commands/legacy.js +142 -0
  29. package/dist/bin/commands/legacy.js.map +1 -0
  30. package/dist/bin/commands/run.d.ts +3 -0
  31. package/dist/bin/commands/run.d.ts.map +1 -0
  32. package/dist/bin/commands/run.js +99 -0
  33. package/dist/bin/commands/run.js.map +1 -0
  34. package/dist/bin/commands/sessions.d.ts +9 -0
  35. package/dist/bin/commands/sessions.d.ts.map +1 -0
  36. package/dist/bin/commands/sessions.js +183 -0
  37. package/dist/bin/commands/sessions.js.map +1 -0
  38. package/dist/bin/commands/skills.d.ts +6 -0
  39. package/dist/bin/commands/skills.d.ts.map +1 -0
  40. package/dist/bin/commands/skills.js +135 -0
  41. package/dist/bin/commands/skills.js.map +1 -0
  42. package/dist/embeddings/index.d.ts +1 -0
  43. package/dist/embeddings/index.d.ts.map +1 -1
  44. package/dist/embeddings/index.js +2 -0
  45. package/dist/embeddings/index.js.map +1 -1
  46. package/dist/embeddings/inverted-index.d.ts +47 -0
  47. package/dist/embeddings/inverted-index.d.ts.map +1 -0
  48. package/dist/embeddings/inverted-index.js +122 -0
  49. package/dist/embeddings/inverted-index.js.map +1 -0
  50. package/dist/embeddings/manager.d.ts +3 -1
  51. package/dist/embeddings/manager.d.ts.map +1 -1
  52. package/dist/embeddings/manager.js +12 -7
  53. package/dist/embeddings/manager.js.map +1 -1
  54. package/dist/embeddings/provider.d.ts.map +1 -1
  55. package/dist/embeddings/provider.js +6 -3
  56. package/dist/embeddings/provider.js.map +1 -1
  57. package/dist/embeddings/vector-store.d.ts +7 -3
  58. package/dist/embeddings/vector-store.d.ts.map +1 -1
  59. package/dist/embeddings/vector-store.js +22 -6
  60. package/dist/embeddings/vector-store.js.map +1 -1
  61. package/dist/factory.d.ts +11 -12
  62. package/dist/factory.d.ts.map +1 -1
  63. package/dist/factory.js +20 -7
  64. package/dist/factory.js.map +1 -1
  65. package/dist/index.d.ts +11 -8
  66. package/dist/index.d.ts.map +1 -1
  67. package/dist/index.js +71 -8
  68. package/dist/index.js.map +1 -1
  69. package/dist/learning/analyzer.d.ts.map +1 -1
  70. package/dist/learning/analyzer.js +17 -35
  71. package/dist/learning/analyzer.js.map +1 -1
  72. package/dist/learning/energy-evaluator.d.ts +128 -0
  73. package/dist/learning/energy-evaluator.d.ts.map +1 -0
  74. package/dist/learning/energy-evaluator.js +175 -0
  75. package/dist/learning/energy-evaluator.js.map +1 -0
  76. package/dist/learning/healing-orchestrator.d.ts +182 -0
  77. package/dist/learning/healing-orchestrator.d.ts.map +1 -0
  78. package/dist/learning/healing-orchestrator.js +250 -0
  79. package/dist/learning/healing-orchestrator.js.map +1 -0
  80. package/dist/learning/index.d.ts +11 -2
  81. package/dist/learning/index.d.ts.map +1 -1
  82. package/dist/learning/index.js +20 -3
  83. package/dist/learning/index.js.map +1 -1
  84. package/dist/learning/instant-loop.d.ts +87 -0
  85. package/dist/learning/instant-loop.d.ts.map +1 -0
  86. package/dist/learning/instant-loop.js +264 -0
  87. package/dist/learning/instant-loop.js.map +1 -0
  88. package/dist/learning/knowledge-extractor.d.ts +56 -0
  89. package/dist/learning/knowledge-extractor.d.ts.map +1 -0
  90. package/dist/learning/knowledge-extractor.js +336 -0
  91. package/dist/learning/knowledge-extractor.js.map +1 -0
  92. package/dist/learning/loop-coordinator.d.ts +61 -0
  93. package/dist/learning/loop-coordinator.d.ts.map +1 -0
  94. package/dist/learning/loop-coordinator.js +96 -0
  95. package/dist/learning/loop-coordinator.js.map +1 -0
  96. package/dist/learning/maintenance-scheduler.d.ts +141 -0
  97. package/dist/learning/maintenance-scheduler.d.ts.map +1 -0
  98. package/dist/learning/maintenance-scheduler.js +186 -0
  99. package/dist/learning/maintenance-scheduler.js.map +1 -0
  100. package/dist/learning/meta-learner.d.ts +7 -0
  101. package/dist/learning/meta-learner.d.ts.map +1 -1
  102. package/dist/learning/meta-learner.js +47 -21
  103. package/dist/learning/meta-learner.js.map +1 -1
  104. package/dist/learning/pipeline.d.ts +55 -4
  105. package/dist/learning/pipeline.d.ts.map +1 -1
  106. package/dist/learning/pipeline.js +134 -16
  107. package/dist/learning/pipeline.js.map +1 -1
  108. package/dist/learning/reflexion-generator.d.ts +64 -0
  109. package/dist/learning/reflexion-generator.d.ts.map +1 -0
  110. package/dist/learning/reflexion-generator.js +194 -0
  111. package/dist/learning/reflexion-generator.js.map +1 -0
  112. package/dist/learning/team-ingester.d.ts +152 -0
  113. package/dist/learning/team-ingester.d.ts.map +1 -0
  114. package/dist/learning/team-ingester.js +333 -0
  115. package/dist/learning/team-ingester.js.map +1 -0
  116. package/dist/learning/team-meta-learner.d.ts +50 -0
  117. package/dist/learning/team-meta-learner.d.ts.map +1 -0
  118. package/dist/learning/team-meta-learner.js +417 -0
  119. package/dist/learning/team-meta-learner.js.map +1 -0
  120. package/dist/learning/team-pipeline.d.ts +76 -0
  121. package/dist/learning/team-pipeline.d.ts.map +1 -0
  122. package/dist/learning/team-pipeline.js +266 -0
  123. package/dist/learning/team-pipeline.js.map +1 -0
  124. package/dist/learning/trajectory-sources/dataclaw.d.ts +41 -0
  125. package/dist/learning/trajectory-sources/dataclaw.d.ts.map +1 -0
  126. package/dist/learning/trajectory-sources/dataclaw.js +330 -0
  127. package/dist/learning/trajectory-sources/dataclaw.js.map +1 -0
  128. package/dist/learning/trajectory-sources/entire.d.ts +31 -0
  129. package/dist/learning/trajectory-sources/entire.d.ts.map +1 -0
  130. package/dist/learning/trajectory-sources/entire.js +189 -0
  131. package/dist/learning/trajectory-sources/entire.js.map +1 -0
  132. package/dist/learning/trajectory-sources/file.d.ts +23 -0
  133. package/dist/learning/trajectory-sources/file.d.ts.map +1 -0
  134. package/dist/learning/trajectory-sources/file.js +101 -0
  135. package/dist/learning/trajectory-sources/file.js.map +1 -0
  136. package/dist/learning/trajectory-sources/huggingface.d.ts +36 -0
  137. package/dist/learning/trajectory-sources/huggingface.d.ts.map +1 -0
  138. package/dist/learning/trajectory-sources/huggingface.js +157 -0
  139. package/dist/learning/trajectory-sources/huggingface.js.map +1 -0
  140. package/dist/learning/trajectory-sources/in-memory.d.ts +21 -0
  141. package/dist/learning/trajectory-sources/in-memory.d.ts.map +1 -0
  142. package/dist/learning/trajectory-sources/in-memory.js +43 -0
  143. package/dist/learning/trajectory-sources/in-memory.js.map +1 -0
  144. package/dist/learning/trajectory-sources/index.d.ts +7 -0
  145. package/dist/learning/trajectory-sources/index.d.ts.map +1 -0
  146. package/dist/learning/trajectory-sources/index.js +7 -0
  147. package/dist/learning/trajectory-sources/index.js.map +1 -0
  148. package/dist/learning/trajectory-sources/pipeline.d.ts +24 -0
  149. package/dist/learning/trajectory-sources/pipeline.d.ts.map +1 -0
  150. package/dist/learning/trajectory-sources/pipeline.js +47 -0
  151. package/dist/learning/trajectory-sources/pipeline.js.map +1 -0
  152. package/dist/learning/unified-pipeline.d.ts +281 -0
  153. package/dist/learning/unified-pipeline.d.ts.map +1 -0
  154. package/dist/learning/unified-pipeline.js +637 -0
  155. package/dist/learning/unified-pipeline.js.map +1 -0
  156. package/dist/memory/candidate-retrieval.d.ts +43 -0
  157. package/dist/memory/candidate-retrieval.d.ts.map +1 -0
  158. package/dist/memory/candidate-retrieval.js +41 -0
  159. package/dist/memory/candidate-retrieval.js.map +1 -0
  160. package/dist/memory/causal-store.d.ts +97 -0
  161. package/dist/memory/causal-store.d.ts.map +1 -0
  162. package/dist/memory/causal-store.js +209 -0
  163. package/dist/memory/causal-store.js.map +1 -0
  164. package/dist/memory/coherence.d.ts +71 -0
  165. package/dist/memory/coherence.d.ts.map +1 -0
  166. package/dist/memory/coherence.js +176 -0
  167. package/dist/memory/coherence.js.map +1 -0
  168. package/dist/memory/experience.d.ts +39 -6
  169. package/dist/memory/experience.d.ts.map +1 -1
  170. package/dist/memory/experience.js +193 -49
  171. package/dist/memory/experience.js.map +1 -1
  172. package/dist/memory/graph-layers/base.d.ts +29 -0
  173. package/dist/memory/graph-layers/base.d.ts.map +1 -0
  174. package/dist/memory/graph-layers/base.js +143 -0
  175. package/dist/memory/graph-layers/base.js.map +1 -0
  176. package/dist/memory/graph-layers/causal.d.ts +14 -0
  177. package/dist/memory/graph-layers/causal.d.ts.map +1 -0
  178. package/dist/memory/graph-layers/causal.js +14 -0
  179. package/dist/memory/graph-layers/causal.js.map +1 -0
  180. package/dist/memory/graph-layers/entity.d.ts +14 -0
  181. package/dist/memory/graph-layers/entity.d.ts.map +1 -0
  182. package/dist/memory/graph-layers/entity.js +14 -0
  183. package/dist/memory/graph-layers/entity.js.map +1 -0
  184. package/dist/memory/graph-layers/index.d.ts +6 -0
  185. package/dist/memory/graph-layers/index.d.ts.map +1 -0
  186. package/dist/memory/graph-layers/index.js +6 -0
  187. package/dist/memory/graph-layers/index.js.map +1 -0
  188. package/dist/memory/graph-layers/semantic.d.ts +14 -0
  189. package/dist/memory/graph-layers/semantic.d.ts.map +1 -0
  190. package/dist/memory/graph-layers/semantic.js +14 -0
  191. package/dist/memory/graph-layers/semantic.js.map +1 -0
  192. package/dist/memory/graph-layers/temporal.d.ts +14 -0
  193. package/dist/memory/graph-layers/temporal.d.ts.map +1 -0
  194. package/dist/memory/graph-layers/temporal.js +14 -0
  195. package/dist/memory/graph-layers/temporal.js.map +1 -0
  196. package/dist/memory/index.d.ts +15 -0
  197. package/dist/memory/index.d.ts.map +1 -1
  198. package/dist/memory/index.js +22 -0
  199. package/dist/memory/index.js.map +1 -1
  200. package/dist/memory/knowledge-bank.d.ts +234 -0
  201. package/dist/memory/knowledge-bank.d.ts.map +1 -0
  202. package/dist/memory/knowledge-bank.js +1048 -0
  203. package/dist/memory/knowledge-bank.js.map +1 -0
  204. package/dist/memory/knowledge-defrag.d.ts +49 -0
  205. package/dist/memory/knowledge-defrag.d.ts.map +1 -0
  206. package/dist/memory/knowledge-defrag.js +257 -0
  207. package/dist/memory/knowledge-defrag.js.map +1 -0
  208. package/dist/memory/knowledge-graph.d.ts +41 -0
  209. package/dist/memory/knowledge-graph.d.ts.map +1 -0
  210. package/dist/memory/knowledge-graph.js +273 -0
  211. package/dist/memory/knowledge-graph.js.map +1 -0
  212. package/dist/memory/meta.d.ts +7 -8
  213. package/dist/memory/meta.d.ts.map +1 -1
  214. package/dist/memory/meta.js +73 -79
  215. package/dist/memory/meta.js.map +1 -1
  216. package/dist/memory/playbook.d.ts +26 -9
  217. package/dist/memory/playbook.d.ts.map +1 -1
  218. package/dist/memory/playbook.js +198 -74
  219. package/dist/memory/playbook.js.map +1 -1
  220. package/dist/memory/reasoning-bank.d.ts +130 -0
  221. package/dist/memory/reasoning-bank.d.ts.map +1 -0
  222. package/dist/memory/reasoning-bank.js +342 -0
  223. package/dist/memory/reasoning-bank.js.map +1 -0
  224. package/dist/memory/reflexion.d.ts +59 -0
  225. package/dist/memory/reflexion.d.ts.map +1 -0
  226. package/dist/memory/reflexion.js +96 -0
  227. package/dist/memory/reflexion.js.map +1 -0
  228. package/dist/memory/search-provider.d.ts +31 -0
  229. package/dist/memory/search-provider.d.ts.map +1 -0
  230. package/dist/memory/search-provider.js +2 -0
  231. package/dist/memory/search-provider.js.map +1 -0
  232. package/dist/memory/search-providers/index.d.ts +3 -0
  233. package/dist/memory/search-providers/index.d.ts.map +1 -0
  234. package/dist/memory/search-providers/index.js +3 -0
  235. package/dist/memory/search-providers/index.js.map +1 -0
  236. package/dist/memory/search-providers/minimem.d.ts +43 -0
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  238. package/dist/memory/search-providers/minimem.js +56 -0
  239. package/dist/memory/search-providers/minimem.js.map +1 -0
  240. package/dist/memory/search-providers/text-similarity.d.ts +15 -0
  241. package/dist/memory/search-providers/text-similarity.d.ts.map +1 -0
  242. package/dist/memory/search-providers/text-similarity.js +21 -0
  243. package/dist/memory/search-providers/text-similarity.js.map +1 -0
  244. package/dist/memory/skill-exporter.d.ts +75 -0
  245. package/dist/memory/skill-exporter.d.ts.map +1 -0
  246. package/dist/memory/skill-exporter.js +248 -0
  247. package/dist/memory/skill-exporter.js.map +1 -0
  248. package/dist/memory/system.d.ts +20 -3
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  250. package/dist/memory/system.js +61 -11
  251. package/dist/memory/system.js.map +1 -1
  252. package/dist/memory/team-experience.d.ts +298 -0
  253. package/dist/memory/team-experience.d.ts.map +1 -0
  254. package/dist/memory/team-experience.js +355 -0
  255. package/dist/memory/team-experience.js.map +1 -0
  256. package/dist/memory/temporal-compressor.d.ts +126 -0
  257. package/dist/memory/temporal-compressor.d.ts.map +1 -0
  258. package/dist/memory/temporal-compressor.js +335 -0
  259. package/dist/memory/temporal-compressor.js.map +1 -0
  260. package/dist/persistence/index.d.ts +11 -0
  261. package/dist/persistence/index.d.ts.map +1 -0
  262. package/dist/persistence/index.js +11 -0
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  264. package/dist/persistence/migrator.d.ts +40 -0
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  266. package/dist/persistence/migrator.js +238 -0
  267. package/dist/persistence/migrator.js.map +1 -0
  268. package/dist/persistence/serializers.d.ts +45 -0
  269. package/dist/persistence/serializers.d.ts.map +1 -0
  270. package/dist/persistence/serializers.js +80 -0
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  272. package/dist/persistence/sqlite-persistence.d.ts +228 -0
  273. package/dist/persistence/sqlite-persistence.d.ts.map +1 -0
  274. package/dist/persistence/sqlite-persistence.js +588 -0
  275. package/dist/persistence/sqlite-persistence.js.map +1 -0
  276. package/dist/runtime/backends/acp-protocol.d.ts +49 -0
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  278. package/dist/runtime/backends/acp-protocol.js +166 -0
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  280. package/dist/runtime/backends/acp.d.ts +26 -26
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  284. package/dist/runtime/backends/index.d.ts +3 -1
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  292. package/dist/runtime/compute-provider.d.ts +87 -0
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  296. package/dist/runtime/flows/learning.d.ts +10 -12
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  310. package/dist/search/evaluator.d.ts +7 -0
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  322. package/dist/search/refinement-loop.d.ts +17 -0
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  326. package/dist/search/refinement-types.d.ts +2 -2
  327. package/dist/search/router.d.ts +32 -2
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  329. package/dist/search/router.js +87 -4
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  331. package/dist/search/team-router.d.ts +91 -0
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  335. package/dist/session-bank/git-reader.d.ts +44 -0
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  351. package/dist/session-bank/types.d.ts +132 -0
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@@ -0,0 +1,366 @@
1
+ import { describe, it, expect, beforeEach, afterEach } from 'vitest';
2
+ import { mkdtemp, rm, writeFile, readFile } from 'node:fs/promises';
3
+ import { tmpdir } from 'node:os';
4
+ import { join } from 'node:path';
5
+ import { KnowledgeBank } from '../../src/memory/knowledge-bank.js';
6
+ import { KnowledgeDefragmenter } from '../../src/memory/knowledge-defrag.js';
7
+ import type { KnowledgeBankConfig, DefragConfig } from '../../src/types/config.js';
8
+ import {
9
+ createObservation,
10
+ createEntityNote,
11
+ } from '../../src/types/knowledge.js';
12
+ import { serializeKnowledgeNote } from '../../src/utils/frontmatter.js';
13
+
14
+ function defaultConfig(): KnowledgeBankConfig {
15
+ return {
16
+ enabled: true,
17
+ memoryDir: 'memory',
18
+ extraction: {
19
+ enabled: true,
20
+ useLlmExtraction: false,
21
+ minAttributionScore: 0.3,
22
+ },
23
+ defrag: {
24
+ minInboxItems: 5,
25
+ autoConsolidate: true,
26
+ consolidationThreshold: 3,
27
+ autoRegenerateSummaries: true,
28
+ llmSummaryGeneration: false,
29
+ autoResolveContradictions: false,
30
+ },
31
+ confidence: {
32
+ extractedInitial: 0.3,
33
+ agentAuthoredInitial: 0.5,
34
+ reinforcementAlpha: 0.1,
35
+ contradictionPenalty: 0.3,
36
+ dailyDecayRate: 0.001,
37
+ staleThreshold: 0.2,
38
+ decayGracePeriodDays: 90,
39
+ },
40
+ graph: {
41
+ enabledLayers: ['semantic', 'entity', 'temporal', 'causal'],
42
+ inferTemporalEdges: true,
43
+ inferCausalEdges: true,
44
+ inferEntityEdges: true,
45
+ domainSplitThreshold: 500,
46
+ sqlitePromotionThreshold: 10000,
47
+ },
48
+ surfacing: {
49
+ includeDomainSummaries: true,
50
+ includeEntityNotes: true,
51
+ maxNotesPerTask: 5,
52
+ maxTokensForKnowledge: 2000,
53
+ includeEvidence: true,
54
+ includeLinks: false,
55
+ },
56
+ minimemAware: false,
57
+ };
58
+ }
59
+
60
+ describe('KnowledgeDefragmenter', () => {
61
+ let tmpDir: string;
62
+ let bank: KnowledgeBank;
63
+ let defragmenter: KnowledgeDefragmenter;
64
+ const config = defaultConfig();
65
+
66
+ beforeEach(async () => {
67
+ tmpDir = await mkdtemp(join(tmpdir(), 'kb-defrag-test-'));
68
+ bank = new KnowledgeBank(tmpDir, config);
69
+ await bank.init();
70
+ defragmenter = new KnowledgeDefragmenter(bank, config.defrag);
71
+ });
72
+
73
+ afterEach(async () => {
74
+ try {
75
+ await bank.close();
76
+ } catch {
77
+ // ignore
78
+ }
79
+ await rm(tmpDir, { recursive: true, force: true });
80
+ });
81
+
82
+ // =========================================================================
83
+ // Full Cycle
84
+ // =========================================================================
85
+
86
+ describe('full defrag cycle', () => {
87
+ it('should run all 7 steps on empty bank', async () => {
88
+ const result = await defragmenter.defragment();
89
+
90
+ expect(result.inbox.processed).toBe(0);
91
+ expect(result.consolidated).toBe(0);
92
+ expect(result.contradictions).toBe(0);
93
+ expect(result.graphRebuilt).toBe(true);
94
+ expect(result.domainSummariesRegenerated).toBe(0);
95
+ expect(result.decay.decayed).toBe(0);
96
+ });
97
+
98
+ it('should run full cycle with some notes', async () => {
99
+ // Add a few observations
100
+ for (let i = 0; i < 3; i++) {
101
+ await bank.addObservation(
102
+ createObservation({
103
+ id: `k-cycle-${i}`,
104
+ title: `Cycle ${i}`,
105
+ body: `Observation ${i}.`,
106
+ domain: ['code'],
107
+ entities: ['vitest'],
108
+ tags: [],
109
+ source: { origin: 'extracted' },
110
+ })
111
+ );
112
+ }
113
+
114
+ const result = await defragmenter.defragment();
115
+ expect(result.graphRebuilt).toBe(true);
116
+ // Should have consolidated 3 observations about 'vitest'
117
+ expect(result.consolidated).toBeGreaterThanOrEqual(3);
118
+ // Should have regenerated domain summary for 'code'
119
+ expect(result.domainSummariesRegenerated).toBeGreaterThanOrEqual(1);
120
+ });
121
+ });
122
+
123
+ // =========================================================================
124
+ // Consolidation
125
+ // =========================================================================
126
+
127
+ describe('consolidation', () => {
128
+ it('should create entity note from ≥3 observations with same entity', async () => {
129
+ for (let i = 0; i < 3; i++) {
130
+ await bank.addObservation(
131
+ createObservation({
132
+ id: `k-cons-${i}`,
133
+ title: `Cons ${i}`,
134
+ body: `Fact about prisma ${i}.`,
135
+ domain: ['db'],
136
+ entities: ['prisma'],
137
+ tags: [],
138
+ source: { origin: 'extracted' },
139
+ })
140
+ );
141
+ }
142
+
143
+ const result = await defragmenter.defragment();
144
+ expect(result.consolidated).toBeGreaterThanOrEqual(3);
145
+
146
+ // Entity note should exist
147
+ const entity = await bank.getEntity('prisma');
148
+ expect(entity).not.toBeNull();
149
+ expect(entity!.frontmatter.type).toBe('entity');
150
+ });
151
+
152
+ it('should add generalizes links from entity to observations', async () => {
153
+ for (let i = 0; i < 3; i++) {
154
+ await bank.addObservation(
155
+ createObservation({
156
+ id: `k-gen-${i}`,
157
+ title: `Gen ${i}`,
158
+ body: `Fact about react ${i}.`,
159
+ domain: ['web'],
160
+ entities: ['react'],
161
+ tags: [],
162
+ source: { origin: 'extracted' },
163
+ })
164
+ );
165
+ }
166
+
167
+ await defragmenter.defragment();
168
+
169
+ const semanticLayer = bank.graph.getLayer('semantic');
170
+ expect(semanticLayer).not.toBeNull();
171
+ const edges = semanticLayer!.getEdges('react', 'outgoing');
172
+ const generalizeEdges = edges.filter(
173
+ (e) => e.relation === 'generalizes'
174
+ );
175
+ expect(generalizeEdges.length).toBeGreaterThanOrEqual(3);
176
+ });
177
+
178
+ it('should not consolidate below threshold', async () => {
179
+ // Only 2 observations about the same entity (threshold is 3)
180
+ for (let i = 0; i < 2; i++) {
181
+ await bank.addObservation(
182
+ createObservation({
183
+ id: `k-below-${i}`,
184
+ title: `Below ${i}`,
185
+ body: `Fact about vue ${i}.`,
186
+ domain: ['web'],
187
+ entities: ['vue'],
188
+ tags: [],
189
+ source: { origin: 'extracted' },
190
+ })
191
+ );
192
+ }
193
+
194
+ const result = await defragmenter.defragment();
195
+ expect(result.consolidated).toBe(0);
196
+
197
+ const entity = await bank.getEntity('vue');
198
+ expect(entity).toBeNull();
199
+ });
200
+
201
+ it('should append to existing entity note', async () => {
202
+ // Create an existing entity
203
+ const entity = createEntityNote({
204
+ entityName: 'typescript',
205
+ body: 'A typed superset of JavaScript.',
206
+ domain: ['code'],
207
+ source: { origin: 'extracted' },
208
+ });
209
+ await bank.addObservation(entity);
210
+
211
+ // Add 3 observations about it
212
+ for (let i = 0; i < 3; i++) {
213
+ await bank.addObservation(
214
+ createObservation({
215
+ id: `k-ts-${i}`,
216
+ title: `TS ${i}`,
217
+ body: `TypeScript fact ${i}.`,
218
+ domain: ['code'],
219
+ entities: ['typescript'],
220
+ tags: [],
221
+ source: { origin: 'extracted' },
222
+ })
223
+ );
224
+ }
225
+
226
+ await defragmenter.defragment();
227
+
228
+ const updatedEntity = await bank.getEntity('typescript');
229
+ expect(updatedEntity).not.toBeNull();
230
+ expect(updatedEntity!.body).toContain('Consolidated Observations');
231
+ });
232
+ });
233
+
234
+ // =========================================================================
235
+ // Domain Summaries
236
+ // =========================================================================
237
+
238
+ describe('domain summary regeneration', () => {
239
+ it('should regenerate domain summaries', async () => {
240
+ await bank.addObservation(
241
+ createObservation({
242
+ id: 'k-domain-obs',
243
+ title: 'Domain Obs',
244
+ body: 'A code observation.',
245
+ domain: ['code'],
246
+ entities: ['node'],
247
+ tags: [],
248
+ source: { origin: 'extracted' },
249
+ })
250
+ );
251
+
252
+ const result = await defragmenter.defragment();
253
+ expect(result.domainSummariesRegenerated).toBeGreaterThanOrEqual(1);
254
+
255
+ const summary = await bank.getDomainSummary('code');
256
+ expect(summary).not.toBeNull();
257
+ expect(summary!.frontmatter.type).toBe('domain-summary');
258
+ });
259
+ });
260
+
261
+ // =========================================================================
262
+ // Graph Rebuild
263
+ // =========================================================================
264
+
265
+ describe('graph rebuild', () => {
266
+ it('should rebuild graph during defrag', async () => {
267
+ await bank.addObservation(
268
+ createObservation({
269
+ id: 'k-rebuild',
270
+ title: 'Rebuild',
271
+ body: 'A note.',
272
+ domain: ['code'],
273
+ entities: [],
274
+ tags: [],
275
+ source: { origin: 'extracted' },
276
+ })
277
+ );
278
+
279
+ const result = await defragmenter.defragment();
280
+ expect(result.graphRebuilt).toBe(true);
281
+
282
+ // Node should still exist after rebuild
283
+ const node = bank.graph.getNode('k-rebuild');
284
+ expect(node).toBeDefined();
285
+ });
286
+ });
287
+
288
+ // =========================================================================
289
+ // Manifest
290
+ // =========================================================================
291
+
292
+ describe('manifest update', () => {
293
+ it('should write manifest.json and domain-index.json', async () => {
294
+ await bank.addObservation(
295
+ createObservation({
296
+ id: 'k-manifest',
297
+ title: 'Manifest',
298
+ body: 'A note.',
299
+ domain: ['code'],
300
+ entities: [],
301
+ tags: [],
302
+ source: { origin: 'extracted' },
303
+ })
304
+ );
305
+
306
+ await defragmenter.defragment();
307
+
308
+ const indexDir = bank.getIndexDir();
309
+
310
+ const manifest = JSON.parse(
311
+ await readFile(join(indexDir, 'manifest.json'), 'utf-8')
312
+ );
313
+ expect(manifest['k-manifest']).toBeDefined();
314
+ expect(manifest['k-manifest'].type).toBe('observation');
315
+
316
+ const domainIndex = JSON.parse(
317
+ await readFile(join(indexDir, 'domain-index.json'), 'utf-8')
318
+ );
319
+ expect(domainIndex['code']).toContain('k-manifest');
320
+ });
321
+ });
322
+
323
+ // =========================================================================
324
+ // shouldDefragment
325
+ // =========================================================================
326
+
327
+ describe('shouldDefragment', () => {
328
+ it('should return false when inbox is below threshold', async () => {
329
+ expect(await defragmenter.shouldDefragment()).toBe(false);
330
+ });
331
+
332
+ it('should return true when inbox meets threshold', async () => {
333
+ const inboxDir = join(tmpDir, 'inbox');
334
+ for (let i = 0; i < 5; i++) {
335
+ await writeFile(join(inboxDir, `note-${i}.md`), 'content', 'utf-8');
336
+ }
337
+ expect(await defragmenter.shouldDefragment()).toBe(true);
338
+ });
339
+ });
340
+
341
+ // =========================================================================
342
+ // Decay during defrag
343
+ // =========================================================================
344
+
345
+ describe('staleness sweep', () => {
346
+ it('should apply decay during defrag cycle', async () => {
347
+ const obs = createObservation({
348
+ id: 'k-defrag-decay',
349
+ title: 'Old',
350
+ body: 'Old note.',
351
+ domain: ['code'],
352
+ entities: [],
353
+ tags: [],
354
+ confidence: 0.5,
355
+ source: { origin: 'extracted' },
356
+ });
357
+ obs.frontmatter.updated = new Date(
358
+ Date.now() - 100 * 24 * 60 * 60 * 1000
359
+ ).toISOString();
360
+ await bank.addObservation(obs);
361
+
362
+ const result = await defragmenter.defragment();
363
+ expect(result.decay.decayed).toBeGreaterThanOrEqual(1);
364
+ });
365
+ });
366
+ });