cognitive-core 0.1.0 → 0.2.0

package/dist/memory/coherence.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"coherence.js","sourceRoot":"","sources":["../../src/memory/coherence.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAGH,OAAO,EAAE,cAAc,EAAE,MAAM,wBAAwB,CAAC;AAyBxD,mDAAmD;AACnD,MAAM,cAAc,GAA4B;IAC9C,CAAC,aAAa,EAAE,YAAY,CAAC;IAC7B,CAAC,aAAa,EAAE,mBAAmB,CAAC;IACpC,CAAC,UAAU,EAAE,YAAY,CAAC;IAC1B,CAAC,SAAS,EAAE,gBAAgB,CAAC;IAC7B,CAAC,aAAa,EAAE,cAAc,CAAC;IAC/B,CAAC,cAAc,EAAE,cAAc,CAAC;IAChC,CAAC,aAAa,EAAE,YAAY,CAAC;IAC7B,CAAC,eAAe,EAAE,eAAe,CAAC;IAClC,CAAC,WAAW,EAAE,aAAa,CAAC;IAC5B,CAAC,cAAc,EAAE,gBAAgB,CAAC;IAClC,CAAC,iBAAiB,EAAE,aAAa,CAAC;CACnC,CAAC;AAEF;;GAEG;AACH,MAAM,OAAO,gBAAgB;IACnB,MAAM,CAAmC;IAEjD,YAAY,MAA+B;QACzC,IAAI,CAAC,MAAM,GAAG;YACZ,sBAAsB,EAAE,MAAM,EAAE,sBAAsB,IAAI,GAAG;YAC7D,cAAc,EAAE,MAAM,EAAE,cAAc,IAAI,EAAE;SAC7C,CAAC;IACJ,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,KAAK,CACT,OAAsB,EACtB,aAA8B;QAE9B,2DAA2D;QAC3D,MAAM,UAAU,GAAG,IAAI,CAAC,gBAAgB,CAAC,OAAO,EAAE,aAAa,CAAC,CAAC;QAEjE,MAAM,cAAc,GAAsC,EAAE,CAAC;QAE7D,KAAK,MAAM,QAAQ,IAAI,UAAU,EAAE,CAAC;YAClC,MAAM,UAAU,GAAG,cAAc,CAAC,OAAO,CAAC,IAAI,EAAE,QAAQ,CAAC,IAAI,CAAC,CAAC;YAE/D,iEAAiE;YACjE,IAAI,UAAU,GAAG,IAAI,CAAC,MAAM,CAAC,sBAAsB;gBAAE,SAAS;YAE9D,MAAM,iBAAiB,GAAG,IAAI,CAAC,uBAAuB,CACpD,OAAO,CAAC,IAAI,EACZ,QAAQ,CAAC,IAAI,CACd,CAAC;YAEF,IAAI,iBAAiB,GAAG,CAAC,EAAE,CAAC;gBAC1B,MAAM,cAAc,GAAG,UAAU,GAAG,iBAAiB,CAAC;gBAEtD,IAAI,cAAc,GAAG,GAAG,EAAE,CAAC;oBACzB,cAAc,CAAC,IAAI,CAAC;wBAClB,cAAc,EAAE,QAAQ,CAAC,WAAW,CAAC,EAAE;wBACvC,cAAc;wBACd,WAAW,EAAE,IAAI,CAAC,qBAAqB,CAAC,OAAO,EAAE,QAAQ,CAAC;qBAC3D,CAAC,CAAC;gBACL,CAAC;YACH,CAAC;QACH,CAAC;QAED,MAAM,YAAY,GAAG,IAAI,CAAC,mBAAmB,CAAC;YAC5C,OAAO;YACP,GAAG,UAAU;SACd,CAAC,CAAC;QAEH,OAAO;YACL,UAAU,EAAE,cAAc,CAAC,MAAM,KAAK,CAAC;YACvC,cAAc;YACd,YAAY;SACb,CAAC;IACJ,CAAC;IAED;;;;;OAKG;IACH,mBAAmB,CAAC,KAAsB;QACxC,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC;YAAE,OAAO,CAAC,CAAC;QAE/B,IAAI,WAAW,GAAG,CAAC,CAAC;QACpB,IAAI,SAAS,GAAG,CAAC,CAAC;QAElB,iDAAiD;QACjD,MAAM,QAAQ,GAAG,GAAG,CAAC;QACrB,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;QAE3F,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,IAAI,IAAI,EAAE,CAAC;YAC5C,KAAK,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,IAAI,IAAI,EAAE,CAAC;gBAChD,IAAI,SAAS,IAAI,QAAQ;oBAAE,MAAM;gBAEjC,4BAA4B;gBAC5B,MAAM,aAAa,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAC3D,KAAK,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,CACxC,CAAC;gBACF,IAAI,CAAC,aAAa,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBACvG,SAAS;gBACX,CAAC;gBAED,MAAM,UAAU,GAAG,cAAc,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;gBAChE,IAAI,UAAU,GAAG,IAAI,CAAC,MAAM,CAAC,sBAAsB;oBAAE,SAAS;gBAE9D,MAAM,QAAQ,GAAG,IAAI,CAAC,uBAAuB,CAC3C,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EACb,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CACd,CAAC;gBACF,WAAW,IAAI,UAAU,GAAG,QAAQ,CAAC;gBACrC,SAAS,EAAE,CAAC;YACd,CAAC;YACD,IAAI,SAAS,IAAI,QAAQ;gBAAE,MAAM;QACnC,CAAC;QAED,OAAO,SAAS,GAAG,CAAC,CAAC,CAAC,CAAC,WAAW,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;IACrD,CAAC;IAED;;;OAGG;IACK,gBAAgB,CACtB,OAAsB,EACtB,aAA8B;QAE9B,MAAM,WAAW,GAAG,IAAI,GAAG,CAAC,OAAO,CAAC,WAAW,CAAC,QAAQ,CAAC,CAAC;QAC1D,MAAM,UAAU,GAAG,IAAI,GAAG,CAAC,OAAO,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;QAEvD,iDAAiD;QACjD,MAAM,iBAAiB,GAAoB,EAAE,CAAC;QAC9C,MAAM,iBAAiB,GAAoB,EAAE,CAAC;QAE9C,KAAK,MAAM,IAAI,IAAI,aAAa,EAAE,CAAC;YACjC,iBAAiB;YACjB,IAAI,IAAI,CAAC,WAAW,CAAC,EAAE,KAAK,OAAO,CAAC,WAAW,CAAC,EAAE;gBAAE,SAAS;YAE7D,MAAM,gBAAgB,GAAG,IAAI,CAAC,WAAW,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAC5D,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,CACnB,CAAC;YACF,MAAM,gBAAgB,GAAG,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAC1D,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,CAClB,CAAC;YAEF,IAAI,gBAAgB,EAAE,CAAC;gBACrB,iBAAiB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YAC/B,CAAC;iBAAM,IAAI,gBAAgB,EAAE,CAAC;gBAC5B,iBAAiB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YAC/B,CAAC;QACH,CAAC;QAED,4CAA4C;QAC5C,MAAM,UAAU,GAAG,CAAC,GAAG,iBAAiB,EAAE,GAAG,iBAAiB,CAAC,CAAC;QAChE,OAAO,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC;IACzD,CAAC;IAED;;;OAGG;IACK,uBAAuB,CAAC,KAAa,EAAE,KAAa;QAC1D,IAAI,aAAa,GAAG,CAAC,CAAC;QAEtB,KAAK,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,IAAI,cAAc,EAAE,CAAC;YAClD,oEAAoE;YACpE,MAAM,YAAY,GAAG,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAC1C,MAAM,YAAY,GAAG,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAC1C,MAAM,YAAY,GAAG,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAC1C,MAAM,YAAY,GAAG,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAE1C,IACE,CAAC,YAAY,IAAI,YAAY,IAAI,CAAC,YAAY,CAAC;gBAC/C,CAAC,YAAY,IAAI,YAAY,IAAI,CAAC,YAAY,CAAC,EAC/C,CAAC;gBACD,aAAa,EAAE,CAAC;YAClB,CAAC;QACH,CAAC;QAED,sDAAsD;QACtD,IAAI,aAAa,KAAK,CAAC;YAAE,OAAO,CAAC,CAAC;QAClC,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,aAAa,GAAG,GAAG,CAAC,CAAC;IAC1C,CAAC;IAED;;OAEG;IACK,qBAAqB,CAC3B,OAAsB,EACtB,YAA2B;QAE3B,MAAM,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;QA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package/dist/memory/experience.d.ts

@@ -1,4 +1,6 @@
 import type { Experience } from '../types/index.js';
+import type { SqlitePersistence } from '../persistence/index.js';
+import type { ReasoningBank } from './reasoning-bank.js';
 /**
  * Result of pruning operation
  */
@@ -21,12 +23,31 @@ export interface PruneResult {
 /**
  * Experience Memory - ReMem-style task-level retrieval
  * Stores complete (task, solution, feedback) tuples
+ *
+ * Uses SqlitePersistence for storage and InvertedIndex
+ * for fast candidate narrowing before similarity scoring.
  */
 export declare class ExperienceMemory {
-    private _store;
+    private persistence;
+    private _index;
     private initialized;
-    constructor(baseDir: string);
+    private _reasoningBank;
+    /**
+     * ItemResolver adapter for getCandidates().
+     * Resolves items by ID from SQLite and returns all values.
+     */
+    private _resolver;
+    constructor(persistence: SqlitePersistence);
     init(): Promise<void>;
+    /**
+     * Set the reasoning bank for cluster-augmented retrieval.
+     * Called externally when ReasoningBank is initialized.
+     */
+    setReasoningBank(bank: ReasoningBank): void;
+    /**
+     * Get the reasoning bank (if set).
+     */
+    getReasoningBank(): ReasoningBank | null;
     /**
      * Store a new experience
      */
@@ -37,7 +58,8 @@ export declare class ExperienceMemory {
     get(id: string): Promise<Experience | undefined>;
     /**
      * Find similar experiences
-     * Uses embedding similarity if available, falls back to text similarity
+     * Uses inverted index for candidate narrowing, then embedding/text similarity scoring.
+     * Bumps accessScore on returned results.
      */
     findSimilar(query: string | number[], options?: {
         k?: number;
@@ -60,12 +82,17 @@ export declare class ExperienceMemory {
      * Get all experiences
      */
     getAll(): Promise<Experience[]>;
+    /**
+     * Delete an experience by ID
+     */
+    delete(id: string): Promise<boolean>;
     /**
      * Get experiences by trajectory
      */
     getByTrajectory(trajectoryId: string): Promise<Experience[]>;
     /**
-     * Prune low-value experiences
+     * Prune low-value experiences.
+     * Uses accessScore as primary value signal when available.
      */
     prune(options?: {
         maxCount?: number;
@@ -88,7 +115,9 @@ export declare class ExperienceMemory {
      */
     private selectWithDomainCoverage;
     /**
-     * Compute value score for an experience
+     * Compute value score for an experience.
+     * Uses accessScore as primary signal when available, falls back to
+     * the original recency + usage heuristic for backward compatibility.
      */
     private computeValue;
     /**
@@ -115,8 +144,12 @@ export declare class ExperienceMemory {
      */
     count(): Promise<number>;
     /**
-     * Close the store
+     * Close the store (no-op — SqlitePersistence lifecycle is managed externally)
      */
     close(): Promise<void>;
+    /**
+     * Synchronous helper: get all experiences from SQLite.
+     */
+    private getAllSync;
 }
 //# sourceMappingURL=experience.d.ts.map

package/dist/memory/experience.d.ts.map

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package/dist/memory/experience.js

@@ -1,48 +1,121 @@
-import { JsonStore } from '../utils/storage.js';
+import { fromISO, fromInt, fromJSON, blobToEmbedding } from '../persistence/index.js';
+import { InvertedIndex } from '../embeddings/inverted-index.js';
 import { findTopK } from '../utils/similarity.js';
+import { getCandidates } from './candidate-retrieval.js';
+/**
+ * Convert an ExperienceRow (SQLite representation) back to an Experience (domain type).
+ */
+function rowToExperience(row) {
+    return {
+        id: row.id,
+        taskInput: row.task_input,
+        solutionOutput: row.solution_output,
+        feedback: row.feedback,
+        success: fromInt(row.success),
+        domain: row.domain,
+        embedding: blobToEmbedding(row.embedding),
+        trajectoryId: row.trajectory_id,
+        usageCount: row.usage_count,
+        accessScore: row.access_score,
+        retrievalCount: row.retrieval_count,
+        tier: row.tier,
+        compressed: fromJSON(row.compressed),
+        metadata: fromJSON(row.metadata, {}),
+        createdAt: fromISO(row.created_at) ?? new Date(),
+        lastAccessedAt: fromISO(row.last_accessed_at),
+    };
+}
 /**
  * Experience Memory - ReMem-style task-level retrieval
  * Stores complete (task, solution, feedback) tuples
+ *
+ * Uses SqlitePersistence for storage and InvertedIndex
+ * for fast candidate narrowing before similarity scoring.
  */
 export class ExperienceMemory {
-    _store;
+    persistence;
+    _index = new InvertedIndex();
     initialized = false;
-    constructor(baseDir) {
-        this._store = new JsonStore(baseDir, 'experiences', {
-            autoSaveInterval: 60000,
-            pretty: true,
-        });
+    _reasoningBank = null;
+    /**
+     * ItemResolver adapter for getCandidates().
+     * Resolves items by ID from SQLite and returns all values.
+     */
+    _resolver;
+    constructor(persistence) {
+        this.persistence = persistence;
+        this._resolver = {
+            get: (id) => {
+                const row = this.persistence.getExperience(id);
+                return row ? rowToExperience(row) : undefined;
+            },
+            values: () => this.getAllSync(),
+        };
     }
     async init() {
         if (this.initialized)
             return;
-        await this._store.init();
+        // Build inverted index from all experiences in DB
+        const ids = this.persistence.getExperienceIds();
+        for (const { id, task_input } of ids) {
+            this._index.add(id, task_input);
+        }
         this.initialized = true;
     }
+    /**
+     * Set the reasoning bank for cluster-augmented retrieval.
+     * Called externally when ReasoningBank is initialized.
+     */
+    setReasoningBank(bank) {
+        this._reasoningBank = bank;
+    }
+    /**
+     * Get the reasoning bank (if set).
+     */
+    getReasoningBank() {
+        return this._reasoningBank;
+    }
     /**
      * Store a new experience
      */
     async add(experience) {
         await this.init();
-        this._store.set(experience.id, experience);
-        await this._store.save(experience.id);
+        this.persistence.insertExperience(experience);
+        this._index.add(experience.id, experience.taskInput);
     }
     /**
      * Retrieve an experience by ID
      */
     async get(id) {
         await this.init();
-        return this._store.get(id);
+        const row = this.persistence.getExperience(id);
+        return row ? rowToExperience(row) : undefined;
     }
     /**
      * Find similar experiences
-     * Uses embedding similarity if available, falls back to text similarity
+     * Uses inverted index for candidate narrowing, then embedding/text similarity scoring.
+     * Bumps accessScore on returned results.
      */
     async findSimilar(query, options) {
         await this.init();
         const k = options?.k ?? 4; // ReMem default
-        let experiences = this._store.values();
-        // Filter by domain if specified
+        // Get candidate pool
+        const domainFallback = options?.domain
+            ? [
+                ...this.persistence.getExperiencesByDomain(options.domain).map(rowToExperience),
+                // Include '_global' domain items too
+                ...this.persistence.getExperiencesByDomain('_global').map(rowToExperience),
+            ]
+            : undefined;
+        let experiences;
+        if (typeof query === 'string') {
+            experiences = getCandidates(query, this._index, this._resolver, { k }, domainFallback);
+        }
+        else {
+            // Embedding query — inverted index doesn't help, use fallback
+            experiences = domainFallback ?? this.getAllSync();
+        }
+        // Apply domain filter (for cases where inverted index returned cross-domain results)
         if (options?.domain) {
             experiences = experiences.filter((e) => e.domain === options.domain);
         }
@@ -56,26 +129,71 @@ export class ExperienceMemory {
             score,
         }));
         // Filter by minimum score
-        if (options?.minScore !== undefined) {
-            return results.filter((r) => r.score >= options.minScore);
+        const filtered = options?.minScore !== undefined
+            ? results.filter((r) => r.score >= options.minScore)
+            : results;
+        // Merge with ReasoningBank results if available (string queries only)
+        let merged = filtered;
+        if (this._reasoningBank && typeof query === 'string') {
+            const clusterResults = this._reasoningBank.findInCluster(query, {
+                k,
+                domain: options?.domain,
+            });
+            // Merge: deduplicate by experience ID, keep higher score
+            const seenIds = new Map();
+            for (const r of merged) {
+                seenIds.set(r.experience.id, r.score);
+            }
+            for (const cr of clusterResults) {
+                const existing = seenIds.get(cr.experience.id);
+                if (existing === undefined) {
+                    merged.push({ experience: cr.experience, score: cr.score });
+                    seenIds.set(cr.experience.id, cr.score);
+                }
+                // If already present, keep the higher score — existing is already in merged
+            }
+            // Re-sort by score after merge
+            merged.sort((a, b) => b.score - a.score);
+            merged = merged.slice(0, k);
         }
-        return results;
+        // Bump access scores on returned results
+        for (const result of merged) {
+            const exp = result.experience;
+            const newRetrievalCount = (exp.retrievalCount ?? 0) + 1;
+            const newAccessScore = (exp.accessScore ?? 0) * 0.95 + 0.1;
+            const newLastAccessedAt = new Date();
+            this.persistence.updateExperience(exp.id, {
+                retrievalCount: newRetrievalCount,
+                accessScore: newAccessScore,
+                lastAccessedAt: newLastAccessedAt,
+            });
+            // Update in-memory reference too so caller sees updated values
+            exp.retrievalCount = newRetrievalCount;
+            exp.accessScore = newAccessScore;
+            exp.lastAccessedAt = newLastAccessedAt;
+        }
+        return merged;
     }
     /**
      * Update an experience (e.g., after refinement)
      */
     async update(id, updates) {
         await this.init();
-        const existing = this._store.get(id);
-        if (!existing)
+        const row = this.persistence.getExperience(id);
+        if (!row)
             return undefined;
+        const existing = rowToExperience(row);
         const updated = {
             ...existing,
             ...updates,
             id: existing.id, // Preserve ID
         };
-        this._store.set(id, updated);
-        await this._store.save(id);
+        // Write-through: full replace via INSERT OR REPLACE
+        this.persistence.insertExperience(updated);
+        // Update inverted index if taskInput changed
+        if (updates.taskInput) {
+            this._index.add(id, updates.taskInput);
+        }
         return updated;
     }
     /**
@@ -83,11 +201,12 @@ export class ExperienceMemory {
      */
     async recordUsage(id) {
         await this.init();
-        const existing = this._store.get(id);
-        if (existing) {
-            existing.usageCount++;
-            existing.lastAccessedAt = new Date();
-            this._store.set(id, existing);
+        const row = this.persistence.getExperience(id);
+        if (row) {
+            this.persistence.updateExperience(id, {
+                usageCount: row.usage_count + 1,
+                lastAccessedAt: new Date(),
+            });
         }
     }
     /**
@@ -95,17 +214,26 @@ export class ExperienceMemory {
      */
     async getAll() {
         await this.init();
-        return this._store.values();
+        return this.getAllSync();
+    }
+    /**
+     * Delete an experience by ID
+     */
+    async delete(id) {
+        await this.init();
+        this._index.remove(id);
+        return this.persistence.deleteExperience(id);
     }
     /**
      * Get experiences by trajectory
      */
     async getByTrajectory(trajectoryId) {
         await this.init();
-        return this._store.values().filter((e) => e.trajectoryId === trajectoryId);
+        return this.persistence.getExperiencesByTrajectory(trajectoryId).map(rowToExperience);
     }
     /**
-     * Prune low-value experiences
+     * Prune low-value experiences.
+     * Uses accessScore as primary value signal when available.
      */
     async prune(options) {
         await this.init();
@@ -117,13 +245,14 @@ export class ExperienceMemory {
             redundancy: [],
             failedOld: [],
         };
-        let experiences = this._store.values();
+        let experiences = this.getAllSync();
         // 1. Prune by age
         if (options?.maxAgeDays) {
             const cutoff = Date.now() - options.maxAgeDays * 24 * 60 * 60 * 1000;
             const oldExperiences = experiences.filter((e) => e.createdAt.getTime() < cutoff);
             for (const exp of oldExperiences) {
-                this._store.delete(exp.id);
+                this.persistence.deleteExperience(exp.id);
+                this._index.remove(exp.id);
                 pruned.push(exp.id);
                 prunedByReason.age.push(exp.id);
             }
@@ -134,7 +263,8 @@ export class ExperienceMemory {
             const cutoff = Date.now() - options.removeFailedOlderThanDays * 24 * 60 * 60 * 1000;
             const failedOld = experiences.filter((e) => !e.success && e.createdAt.getTime() < cutoff);
             for (const exp of failedOld) {
-                this._store.delete(exp.id);
+                this.persistence.deleteExperience(exp.id);
+                this._index.remove(exp.id);
                 pruned.push(exp.id);
                 prunedByReason.failedOld.push(exp.id);
             }
@@ -147,26 +277,28 @@ export class ExperienceMemory {
             const sevenDaysAgo = Date.now() - 7 * 24 * 60 * 60 * 1000;
             for (const exp of lowUsage) {
                 if (exp.createdAt.getTime() < sevenDaysAgo) {
-                    this._store.delete(exp.id);
+                    this.persistence.deleteExperience(exp.id);
+                    this._index.remove(exp.id);
                     pruned.push(exp.id);
                     prunedByReason.usage.push(exp.id);
                 }
             }
-            experiences = this._store.values(); // Refresh
+            experiences = this.getAllSync(); // Refresh
         }
         // 4. Prune redundant/similar experiences
         if (options?.similarityThreshold) {
             const redundant = await this.findRedundant(experiences, options.similarityThreshold, options.preserveDomainCoverage);
             for (const exp of redundant) {
-                this._store.delete(exp.id);
+                this.persistence.deleteExperience(exp.id);
+                this._index.remove(exp.id);
                 pruned.push(exp.id);
                 prunedByReason.redundancy.push(exp.id);
             }
-            experiences = this._store.values(); // Refresh
+            experiences = this.getAllSync(); // Refresh
         }
         // 5. Prune by count (keep most valuable)
         if (options?.maxCount && experiences.length > options.maxCount) {
-            // Sort by value
+            // Sort by value (uses accessScore when available)
             experiences.sort((a, b) => {
                 const scoreA = this.computeValue(a);
                 const scoreB = this.computeValue(b);
@@ -178,7 +310,8 @@ export class ExperienceMemory {
                 const keptIds = new Set(kept.map((e) => e.id));
                 for (const exp of experiences) {
                     if (!keptIds.has(exp.id)) {
-                        this._store.delete(exp.id);
+                        this.persistence.deleteExperience(exp.id);
+                        this._index.remove(exp.id);
                         pruned.push(exp.id);
                         prunedByReason.capacity.push(exp.id);
                     }
@@ -187,21 +320,18 @@ export class ExperienceMemory {
             else {
                 const toRemove = experiences.slice(options.maxCount);
                 for (const exp of toRemove) {
-                    this._store.delete(exp.id);
+                    this.persistence.deleteExperience(exp.id);
+                    this._index.remove(exp.id);
                     pruned.push(exp.id);
                     prunedByReason.capacity.push(exp.id);
                 }
             }
         }
-        // Save changes
-        if (pruned.length > 0) {
-            await this._store.flush();
-        }
         return {
             prunedIds: pruned,
             prunedByReason,
             totalPruned: pruned.length,
-            remainingCount: this._store.size(),
+            remainingCount: this.persistence.getExperienceCount(),
         };
     }
     /**
@@ -301,9 +431,17 @@ export class ExperienceMemory {
         return selected;
     }
     /**
-     * Compute value score for an experience
+     * Compute value score for an experience.
+     * Uses accessScore as primary signal when available, falls back to
+     * the original recency + usage heuristic for backward compatibility.
      */
     computeValue(exp) {
+        // If accessScore is populated (> 0), use it as primary signal
+        if (exp.accessScore && exp.accessScore > 0) {
+            return (exp.accessScore *
+                (exp.success ? 1 : 0.3));
+        }
+        // Backward compat: original heuristic for experiences without accessScore
         const ageMs = Date.now() - exp.createdAt.getTime();
         const ageDays = ageMs / (1000 * 60 * 60 * 24);
         const recencyScore = Math.exp(-ageDays / 30); // Decay over ~30 days
@@ -323,7 +461,7 @@ export class ExperienceMemory {
      */
     async getPruningStats() {
         await this.init();
-        const experiences = this._store.values();
+        const experiences = this.getAllSync();
         const byDomain = {};
         let successCount = 0;
         let totalUsage = 0;
@@ -380,13 +518,19 @@ export class ExperienceMemory {
      */
     async count() {
         await this.init();
-        return this._store.size();
+        return this.persistence.getExperienceCount();
     }
     /**
-     * Close the store
+     * Close the store (no-op — SqlitePersistence lifecycle is managed externally)
      */
     async close() {
-        await this._store.close();
+        // SqlitePersistence lifecycle is managed by MemorySystem/Atlas
+    }
+    /**
+     * Synchronous helper: get all experiences from SQLite.
+     */
+    getAllSync() {
+        return this.persistence.getAllExperiences().map(rowToExperience);
     }
 }
 //# sourceMappingURL=experience.js.map

package/dist/memory/experience.js.map

@@ -1 +1 @@
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package/dist/memory/graph-layers/base.d.ts

@@ -0,0 +1,29 @@
+import type { GraphEdge, GraphLayerOperations } from '../../types/knowledge-graph.js';
+import type { GraphLayerName, KnowledgeNote, LinkRelation } from '../../types/knowledge.js';
+/**
+ * Base implementation for a graph layer.
+ *
+ * Uses an in-memory adjacency list for O(1) edge lookups.
+ * Subclasses only override the set of valid relation types for their layer.
+ */
+export declare abstract class BaseGraphLayer implements GraphLayerOperations {
+    abstract readonly name: GraphLayerName;
+    readonly enabled: boolean;
+    /** Outgoing edges: nodeId → edges[] */
+    protected outgoing: Map<string, GraphEdge[]>;
+    /** Incoming edges: nodeId → edges[] */
+    protected incoming: Map<string, GraphEdge[]>;
+    /** Which relation types belong to this layer */
+    protected abstract readonly validRelations: readonly LinkRelation[];
+    constructor(enabled?: boolean);
+    getEdges(nodeId: string, direction?: 'outgoing' | 'incoming' | 'both'): GraphEdge[];
+    neighbors(nodeId: string, depth?: number): string[];
+    pathBetween(fromId: string, toId: string): string[] | null;
+    addEdge(edge: GraphEdge): void;
+    removeEdge(fromId: string, toId: string, relation: string): void;
+    getAllEdges(): GraphEdge[];
+    edgeCount(): number;
+    rebuild(notes: KnowledgeNote[]): void;
+    clear(): void;
+}
+//# sourceMappingURL=base.d.ts.map

package/dist/memory/graph-layers/base.d.ts.map

@@ -0,0 +1 @@
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