codesift-mcp 0.15.5 → 0.17.0

package/dist/storage/index-store.js

@@ -3,6 +3,7 @@ import { statSync } from "node:fs";
 import { join } from "node:path";
 import { createHash } from "node:crypto";
 import { atomicWriteFile } from "./_shared.js";
+import { findSymbolsSqlite, getIndexMetaSqlite, streamSymbolsSqlite, } from "./sqlite/queries.js";
 import { loadIndexSqlite, saveIndexSqlite, saveIncrementalSqlite, removeFileFromIndexSqlite, getFileEntrySqlite, getDataVersion, classifyStorageError, IndexStorageError, loadIndexSummarySqlite, } from "./sqlite-index-store.js";
 import { cacheLoadedIndex, cacheLoadedSummary, getCachedIndex, getCachedSummary, invalidateIndexCache, } from "./index-cache.js";
 import { assertCanonicalIndexPath, ensureSqliteMigrated as migrateLegacyIndex, resolveIndexBackend, sqlitePathFor, } from "./index-migration.js";
@@ -69,6 +70,117 @@ export async function getFileEntry(indexPath, filePath) {
     const index = await loadJsonIndex(indexPath);
     return index?.files.find((f) => f.path === filePath);
 }
+/**
+ * Symbols matching a predicate, without constructing the rest of the index.
+ *
+ * The narrow read the tool layer has never had. Of the 159 call sites that materialise a whole
+ * `CodeIndex`, 31% need nothing more than this or `getIndexMeta` — a keyed lookup or a metadata
+ * field — and pay 349 MB and ~10 s for it on the largest repo here. Measured against that:
+ * `WHERE name = ?` 9 ms, `WHERE file = ?` 10 ms, `WHERE kind = ?` 32 ms.
+ *
+ * The JSON backend keeps the old cost — there is no way to read one record out of a blob — so this
+ * is parity there, not a speedup. It exists so a caller is written once against the narrow shape
+ * instead of branching on the backend, exactly as `getFileEntry` above.
+ */
+export async function findSymbols(indexPath, query) {
+    assertCanonicalIndexPath(indexPath);
+    if ((await resolveIndexBackend()) === "sqlite") {
+        const dbPath = sqlitePathFor(indexPath);
+        await ensureSqliteMigrated(indexPath, dbPath);
+        return findSymbolsSqlite(dbPath, query);
+    }
+    warnIfRollbackIsStale(indexPath);
+    const index = await loadJsonIndex(indexPath);
+    if (index === null)
+        return [];
+    return applySymbolQuery(index.symbols, query);
+}
+/**
+ * Fold over matching symbols in pages instead of holding them all.
+ *
+ * For the callers that genuinely have to see every symbol — regex scanners, adjacency builders,
+ * vocabulary collectors — but never need them resident at once. They fold and discard, so the
+ * array was never the requirement; it was only how the data arrived.
+ */
+export async function streamSymbols(indexPath, query, onBatch) {
+    assertCanonicalIndexPath(indexPath);
+    if ((await resolveIndexBackend()) === "sqlite") {
+        const dbPath = sqlitePathFor(indexPath);
+        await ensureSqliteMigrated(indexPath, dbPath);
+        return streamSymbolsSqlite(dbPath, query, onBatch);
+    }
+    warnIfRollbackIsStale(indexPath);
+    const index = await loadJsonIndex(indexPath);
+    if (index === null)
+        return;
+    // One batch on JSON: the whole document is already parsed, so paging it would add ceremony
+    // without removing a single byte from memory. Parity, not a speedup — same contract as above.
+    await onBatch(applySymbolQuery(index.symbols, query));
+}
+/**
+ * Root, repo and counts, with no symbol construction at all.
+ *
+ * 26 of the 159 call sites read only `index.root` or `index.repo`, and two materialise the whole
+ * index purely to check that it exists.
+ */
+export async function getIndexMeta(indexPath) {
+    assertCanonicalIndexPath(indexPath);
+    if ((await resolveIndexBackend()) === "sqlite") {
+        const dbPath = sqlitePathFor(indexPath);
+        await ensureSqliteMigrated(indexPath, dbPath);
+        return getIndexMetaSqlite(dbPath);
+    }
+    warnIfRollbackIsStale(indexPath);
+    const index = await loadJsonIndex(indexPath);
+    if (index === null)
+        return null;
+    return {
+        repo: index.repo,
+        root: index.root,
+        updatedAt: index.updated_at ?? index.created_at ?? 0,
+        symbolCount: index.symbols.length,
+        fileCount: index.files.length,
+    };
+}
+/**
+ * The JSON backend's equivalent of the WHERE clause.
+ *
+ * Kept beside the SQL rather than in the query module so the two shapes are read together: any
+ * predicate added to `SymbolQuery` has to be answered here as well, or the JSON backend silently
+ * ignores it and returns MORE rows than asked for — a filter that fails open.
+ *
+ * `withSource: false` deletes the key rather than setting it to undefined, matching what the SQL
+ * projection produces. A symbol carrying `source: undefined` is indistinguishable from one whose
+ * source is genuinely absent, and callers would read that as a fact about the code.
+ */
+function applySymbolQuery(symbols, query) {
+    const ids = query.ids === undefined ? null : new Set(query.ids);
+    const out = [];
+    for (const symbol of symbols) {
+        if (query.limit !== undefined && out.length >= query.limit)
+            break;
+        if (query.file !== undefined && symbol.file !== query.file)
+            continue;
+        if (query.name !== undefined && symbol.name !== query.name)
+            continue;
+        if (query.namePrefix !== undefined && !symbol.name.startsWith(query.namePrefix))
+            continue;
+        if (query.kind !== undefined && symbol.kind !== query.kind)
+            continue;
+        if (query.parent !== undefined && symbol.parent !== query.parent)
+            continue;
+        if (ids !== null && !ids.has(symbol.id))
+            continue;
+        if (query.withSource) {
+            out.push(symbol);
+        }
+        else {
+            const { source: _dropped, ...rest } = symbol;
+            out.push(rest);
+        }
+    }
+    return out;
+}
 /**
  * Read an index's files and metadata WITHOUT constructing its symbols (ADR-004 stage 2).
  *

package/dist/storage/index-store.js.map

@@ -1 +1 @@
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package/dist/storage/registry.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"registry.d.ts","sourceRoot":"","sources":["../../src/storage/registry.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,aAAa,CAAC;AAItD;;;GAGG;AACH;;;;;;;;;;;;;GAaG;AACH,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CA4B1E;AAED;;;;;GAKG;AACH,wBAAsB,qBAAqB,CACzC,YAAY,EAAE,MAAM,EACpB,QAAQ,EAAE,QAAQ,GACjB,OAAO,CAAC,IAAI,CAAC,CAGf;AAgKD;;;;GAIG;AACH,wBAAgB,gBAAgB,CAAC,CAAC,EAAE,YAAY,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,OAAO,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAc5F;AAED;;GAEG;AACH,wBAAsB,YAAY,CAChC,YAAY,EAAE,MAAM,EACpB,IAAI,EAAE,QAAQ,GACb,OAAO,CAAC,IAAI,CAAC,CAOf;AAED;;;GAGG;AACH,wBAAsB,OAAO,CAC3B,YAAY,EAAE,MAAM,EACpB,IAAI,EAAE,MAAM,GACX,OAAO,CAAC,QAAQ,GAAG,IAAI,CAAC,CAG1B;AAED;;GAEG;AACH,wBAAsB,SAAS,CAC7B,YAAY,EAAE,MAAM,GACnB,OAAO,CAAC,QAAQ,EAAE,CAAC,CAGrB;AAED;;GAEG;AACH,wBAAsB,cAAc,CAClC,YAAY,EAAE,MAAM,EACpB,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,OAAO,CAAC,IAAI,CAAC,QAAQ,EAAE,iBAAiB,GAAG,cAAc,GAAG,YAAY,GAAG,YAAY,CAAC,CAAC,GACjG,OAAO,CAAC,IAAI,CAAC,CASf;AAED;;;GAGG;AACH,wBAAsB,UAAU,CAC9B,YAAY,EAAE,MAAM,EACpB,IAAI,EAAE,MAAM,GACX,OAAO,CAAC,OAAO,CAAC,CAalB;AAED;;;;;;;;GAQG;AACH,wBAAsB,yBAAyB,CAC7C,YAAY,EAAE,MAAM,EACpB,SAAS,EAAE,MAAM,GAChB,OAAO,CAAC;IAAE,YAAY,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,QAAQ,CAAA;CAAE,GAAG,IAAI,CAAC,CA6C1D;AA+BD;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAgB,WAAW,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CASpD"}
+{"version":3,"file":"registry.d.ts","sourceRoot":"","sources":["../../src/storage/registry.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,aAAa,CAAC;AAItD;;;GAGG;AACH;;;;;;;;;;;;;GAaG;AACH,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CA4B1E;AAED;;;;;GAKG;AACH,wBAAsB,qBAAqB,CACzC,YAAY,EAAE,MAAM,EACpB,QAAQ,EAAE,QAAQ,GACjB,OAAO,CAAC,IAAI,CAAC,CAGf;AAgKD;;;;GAIG;AACH,wBAAgB,gBAAgB,CAAC,CAAC,EAAE,YAAY,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,OAAO,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAc5F;AAED;;GAEG;AACH,wBAAsB,YAAY,CAChC,YAAY,EAAE,MAAM,EACpB,IAAI,EAAE,QAAQ,GACb,OAAO,CAAC,IAAI,CAAC,CAmBf;AAED;;;GAGG;AACH,wBAAsB,OAAO,CAC3B,YAAY,EAAE,MAAM,EACpB,IAAI,EAAE,MAAM,GACX,OAAO,CAAC,QAAQ,GAAG,IAAI,CAAC,CAG1B;AAED;;GAEG;AACH,wBAAsB,SAAS,CAC7B,YAAY,EAAE,MAAM,GACnB,OAAO,CAAC,QAAQ,EAAE,CAAC,CAGrB;AAED;;GAEG;AACH,wBAAsB,cAAc,CAClC,YAAY,EAAE,MAAM,EACpB,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,OAAO,CAAC,IAAI,CAAC,QAAQ,EAAE,iBAAiB,GAAG,cAAc,GAAG,YAAY,GAAG,YAAY,CAAC,CAAC,GACjG,OAAO,CAAC,IAAI,CAAC,CASf;AAED;;;GAGG;AACH,wBAAsB,UAAU,CAC9B,YAAY,EAAE,MAAM,EACpB,IAAI,EAAE,MAAM,GACX,OAAO,CAAC,OAAO,CAAC,CAalB;AAED;;;;;;;;GAQG;AACH,wBAAsB,yBAAyB,CAC7C,YAAY,EAAE,MAAM,EACpB,SAAS,EAAE,MAAM,GAChB,OAAO,CAAC;IAAE,YAAY,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,QAAQ,CAAA;CAAE,GAAG,IAAI,CAAC,CA6C1D;AA+BD;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAgB,WAAW,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CASpD"}

package/dist/storage/registry.js

@@ -242,12 +242,24 @@ export function withRegistryLock(registryPath, work) {
  * Register or update a repo in the registry.
  */
 export async function registerRepo(registryPath, meta) {
-    return withRegistryLock(registryPath, async () => {
+    await withRegistryLock(registryPath, async () => {
         const registry = await loadRegistry(registryPath);
         registry.repos[meta.name] = meta;
         registry.updated_at = Date.now();
         await saveRegistryUnderLock(registryPath, registry);
     });
+    // A repository CodeSift has just indexed is exactly one a Codex session is about to ask about —
+    // and Codex, whose MCP config is a single global file, cannot tell the daemon which directory it
+    // is working in without a per-project file. Written here so it needs no ceremony; MAIN CHECKOUTS
+    // ONLY, and never over an existing file. Imported lazily so `storage` does not depend on `cli`,
+    // and swallowed entirely: registration must succeed whether or not a client can be configured.
+    try {
+        const { ensureCodexProjectConfig } = await import("../cli/setup/codex-project-auto.js");
+        await ensureCodexProjectConfig(meta.root);
+    }
+    catch {
+        /* a client config is a convenience; the repo is registered either way */
+    }
 }
 /**
  * Get a single repo's metadata by name.

package/dist/storage/registry.js.map

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package/dist/storage/sqlite/accessors.d.ts

@@ -31,4 +31,21 @@ export declare function getSymbolsForFileSqlite(dbPath: string, filePath: string
  * in-memory index cache becomes safe here despite the hook writing from its own process.
  */
 export declare function getDataVersion(dbPath: string): Promise<number>;
+/**
+ * Does this database already hold an index?
+ *
+ * Exists to replace a FULL materialisation used as an emptiness test. `ensureSqliteMigrated` called
+ * `loadIndexSqlite(dbPath)` and threw the result away, so every cold entry to a repository built the
+ * whole object graph TWICE — once to answer "is it empty", once for real. On the largest index here
+ * that is ~349 MB of objects allocated and discarded, and the allocation storm lands on the
+ * incremental marking GC, which is a second cost on top of the first.
+ *
+ * The semantics are copied exactly, not approximated: `loadIndexSqlite` returns null when `repo` or
+ * `root` is missing from meta and for no other reason, so those two keys ARE the test.
+ *
+ * `openIndexDb` is kept because the old call depended on it for side effects — it creates the schema
+ * and runs the v1->v2 migration. Dropping it here would move that work to whoever touched the
+ * database next, which is exactly the kind of quiet reordering this codebase has been bitten by.
+ */
+export declare function indexDbIsPopulated(dbPath: string): Promise<boolean>;
 //# sourceMappingURL=accessors.d.ts.map

package/dist/storage/sqlite/accessors.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"accessors.d.ts","sourceRoot":"","sources":["../../../src/storage/sqlite/accessors.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAS5D,OAAO,EAAkB,KAAK,YAAY,EAAE,MAAM,WAAW,CAAC;AAqC9D;;;;;;GAMG;AACH,wBAAsB,kBAAkB,CACtC,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC,CAQ7B;AAED;;;;;;;GAOG;AACH,wBAAsB,sBAAsB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,GAAG,IAAI,CAAC,CAwDzF;AAED,mEAAmE;AACnE,wBAAsB,kBAAkB,CACtC,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC,SAAS,GAAG,SAAS,CAAC,CAQhC;AAED,6FAA6F;AAC7F,wBAAsB,qBAAqB,CACzC,MAAM,EAAE,MAAM,EACd,WAAW,EAAE,MAAM,EACnB,UAAU,EAAE,UAAU,EAAE,EACxB,SAAS,CAAC,EAAE,SAAS,GACpB,OAAO,CAAC,IAAI,CAAC,CAsBf;AAED,2DAA2D;AAC3D,wBAAsB,yBAAyB,CAC7C,MAAM,EAAE,MAAM,EACd,WAAW,EAAE,MAAM,GAClB,OAAO,CAAC,IAAI,CAAC,CAcf;AAED,gFAAgF;AAChF,wBAAsB,uBAAuB,CAC3C,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC,UAAU,EAAE,CAAC,CAUvB;AAED;;;;GAIG;AACH,wBAAsB,cAAc,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAMpE;AAED;;;;;;;;;;;;;;;GAeG;AACH,wBAAsB,kBAAkB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAGzE"}

package/dist/storage/sqlite/accessors.js

@@ -175,4 +175,24 @@ export async function getDataVersion(dbPath) {
         return row.data_version;
     });
 }
+/**
+ * Does this database already hold an index?
+ *
+ * Exists to replace a FULL materialisation used as an emptiness test. `ensureSqliteMigrated` called
+ * `loadIndexSqlite(dbPath)` and threw the result away, so every cold entry to a repository built the
+ * whole object graph TWICE — once to answer "is it empty", once for real. On the largest index here
+ * that is ~349 MB of objects allocated and discarded, and the allocation storm lands on the
+ * incremental marking GC, which is a second cost on top of the first.
+ *
+ * The semantics are copied exactly, not approximated: `loadIndexSqlite` returns null when `repo` or
+ * `root` is missing from meta and for no other reason, so those two keys ARE the test.
+ *
+ * `openIndexDb` is kept because the old call depended on it for side effects — it creates the schema
+ * and runs the v1->v2 migration. Dropping it here would move that work to whoever touched the
+ * database next, which is exactly the kind of quiet reordering this codebase has been bitten by.
+ */
+export async function indexDbIsPopulated(dbPath) {
+    const db = await openIndexDb(dbPath);
+    return readMetaValue(db, "repo") !== undefined && readMetaValue(db, "root") !== undefined;
+}
 //# sourceMappingURL=accessors.js.map

package/dist/storage/sqlite/accessors.js.map

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package/dist/storage/sqlite/connection.d.ts

@@ -21,6 +21,26 @@ export declare function rollbackQuietly(db: DatabaseSyncType): void;
  * an agent edits files faster than the previous write settles.
  */
 export declare function openIndexDb(dbPath: string): Promise<DatabaseSyncType>;
+/**
+ * WAL size past which a write triggers an explicit checkpoint.
+ *
+ * A bound on a file that otherwise had none. Small enough that replaying it is cheap, large enough
+ * that a busy repo is not checkpointing on every save.
+ */
+export declare const WAL_CHECKPOINT_THRESHOLD_BYTES: number;
+/**
+ * Checkpoint when the WAL has grown past the threshold.
+ *
+ * TRUNCATE rather than PASSIVE: PASSIVE is what the automatic checkpoint already does, and being
+ * starved by a live reader is precisely the failure this exists to correct. TRUNCATE also returns
+ * the file to zero bytes rather than leaving a large one the next reader still has to map.
+ *
+ * Best-effort by design. If a reader IS mid-snapshot the checkpoint cannot complete, SQLite answers
+ * BUSY, and the next write tries again — a failure here must never fail a write that has already
+ * committed. An occasional miss is harmless precisely because it retries; before this, the
+ * checkpoint never ran at all.
+ */
+export declare function maybeCheckpointWal(db: DatabaseSyncType, dbPath: string, thresholdBytes?: number): void;
 /** Close one cached connection (tests, and the shutdown path). */
 export declare function closeIndexDb(dbPath: string): void;
 export declare function closeAllIndexDbs(): void;

package/dist/storage/sqlite/connection.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"connection.d.ts","sourceRoot":"","sources":["../../../src/storage/sqlite/connection.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,YAAY,IAAI,gBAAgB,EAAE,MAAM,aAAa,CAAC;AAiBpE;;;;;;;;;;GAUG;AACH,wBAAgB,eAAe,CAAC,EAAE,EAAE,gBAAgB,GAAG,IAAI,CAO1D;AAmBD;;;;;;;;GAQG;AACH,wBAAsB,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAgB3E;AA0GD;;;;;GAKG;AACH,eAAO,MAAM,8BAA8B,QAAmB,CAAC;AAE/D;;;;;;;;;;;GAWG;AACH,wBAAgB,kBAAkB,CAChC,EAAE,EAAE,gBAAgB,EACpB,MAAM,EAAE,MAAM,EAEd,cAAc,GAAE,MAAuC,GACtD,IAAI,CAcN;AAED,kEAAkE;AAClE,wBAAgB,YAAY,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAejD;AAED,wBAAgB,gBAAgB,IAAI,IAAI,CAEvC;AAED;;;;;;;;;;;;GAYG;AACH,wBAAsB,kBAAkB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAgBlF;AAMD,wBAAgB,aAAa,CAAC,EAAE,EAAE,gBAAgB,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAKnF;AAED,wBAAgB,cAAc,CAAC,EAAE,EAAE,gBAAgB,EAAE,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,IAAI,CAIrF"}

package/dist/storage/sqlite/connection.js

@@ -1,4 +1,5 @@
 import { mkdir } from "node:fs/promises";
+import { statSync } from "node:fs";
 import { dirname } from "node:path";
 import { IndexStorageError, rethrowOperational } from "./errors.js";
 import { loadSqliteCtor } from "./runtime.js";
@@ -87,6 +88,17 @@ async function openUncachedIndexDb(dbPath) {
         db = new Ctor(dbPath);
         db.exec("PRAGMA journal_mode = WAL");
         db.exec("PRAGMA busy_timeout = 5000");
+        // Explicit, not left to the default. SQLite's automatic checkpoint is PASSIVE and runs at
+        // COMMIT — and a PASSIVE checkpoint cannot copy past the oldest live reader snapshot. This
+        // process holds exactly such a snapshot for a long time: `openReadConnection` below wraps a
+        // PAGED read that yields to the event loop between pages. In a daemon serving many repos there
+        // is nearly always one open, so the automatic checkpoint was starved indefinitely and the WAL
+        // grew without bound — measured 2026-08-28 at **16.26 GB across 713 files**, largest single WAL
+        // 1998 MB against 27 GB of databases. Every read replayed it, which is why cold loads took
+        // minutes and the daemon sat in uninterruptible I/O. Lowering the threshold alone would NOT
+        // have fixed it (a starved checkpoint is starved at any threshold); `maybeCheckpointWal` is the
+        // part that actually bounds the file.
+        db.exec("PRAGMA wal_autocheckpoint = 2000");
         db.exec("PRAGMA foreign_keys = ON");
         db.exec(SCHEMA_SQL);
     }
@@ -176,6 +188,46 @@ async function openUncachedIndexDb(dbPath) {
     connections.set(dbPath, db);
     return db;
 }
+/**
+ * WAL size past which a write triggers an explicit checkpoint.
+ *
+ * A bound on a file that otherwise had none. Small enough that replaying it is cheap, large enough
+ * that a busy repo is not checkpointing on every save.
+ */
+export const WAL_CHECKPOINT_THRESHOLD_BYTES = 64 * 1024 * 1024;
+/**
+ * Checkpoint when the WAL has grown past the threshold.
+ *
+ * TRUNCATE rather than PASSIVE: PASSIVE is what the automatic checkpoint already does, and being
+ * starved by a live reader is precisely the failure this exists to correct. TRUNCATE also returns
+ * the file to zero bytes rather than leaving a large one the next reader still has to map.
+ *
+ * Best-effort by design. If a reader IS mid-snapshot the checkpoint cannot complete, SQLite answers
+ * BUSY, and the next write tries again — a failure here must never fail a write that has already
+ * committed. An occasional miss is harmless precisely because it retries; before this, the
+ * checkpoint never ran at all.
+ */
+export function maybeCheckpointWal(db, dbPath, 
+// A seam for tests, which cannot cheaply grow a 64 MB WAL. Production never passes it.
+thresholdBytes = WAL_CHECKPOINT_THRESHOLD_BYTES) {
+    if (dbPath === ":memory:")
+        return;
+    let walBytes;
+    try {
+        walBytes = statSync(`${dbPath}-wal`).size;
+    }
+    catch {
+        return; // no WAL yet, or it vanished under us — nothing to bound
+    }
+    if (walBytes < thresholdBytes)
+        return;
+    try {
+        db.exec("PRAGMA wal_checkpoint(TRUNCATE)");
+    }
+    catch {
+        /* BUSY under a live reader — the next write tries again */
+    }
+}
 /** Close one cached connection (tests, and the shutdown path). */
 export function closeIndexDb(dbPath) {
     const db = connections.get(dbPath);
@@ -183,6 +235,15 @@ export function closeIndexDb(dbPath) {
         return;
     connections.delete(dbPath);
     try {
+        // Close is the one moment this process is provably done reading through THIS handle, so it is
+        // the checkpoint most likely to succeed. Unconditional rather than threshold-gated: leaving a
+        // WAL behind on close is how an idle repo keeps one forever.
+        if (dbPath !== ":memory:") {
+            try {
+                db.exec("PRAGMA wal_checkpoint(TRUNCATE)");
+            }
+            catch { /* another connection is reading */ }
+        }
         db.close();
     }
     catch {

package/dist/storage/sqlite/connection.js.map

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+{"version":3,"file":"connection.js","sourceRoot":"","sources":["../../../src/storage/sqlite/connection.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACzC,OAAO,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AACnC,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC,OAAO,EAAE,iBAAiB,EAAE,kBAAkB,EAAE,MAAM,aAAa,CAAC;AACpE,OAAO,EAAE,cAAc,EAAE,MAAM,cAAc,CAAC;AAC9C,OAAO,EAAE,oBAAoB,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAE/E;;;;;;;;GAQG;AAEH,MAAM,WAAW,GAAG,IAAI,GAAG,EAA4B,CAAC;AAExD;;;;;;;;;;GAUG;AACH,MAAM,UAAU,eAAe,CAAC,EAAoB;IAClD,IAAI,CAAC;QACH,EAAE,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;IACtB,CAAC;IAAC,MAAM,CAAC;QACP;qCAC6B;IAC/B,CAAC;AACH,CAAC;AAED;;;;;;;;;;;;;;GAcG;AACH,MAAM,OAAO,GAAG,IAAI,GAAG,EAAqC,CAAC;AAE7D;;;;;;;;GAQG;AACH,MAAM,CAAC,KAAK,UAAU,WAAW,CAAC,MAAc;IAC9C,MAAM,MAAM,GAAG,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;IACvC,IAAI,MAAM;QAAE,OAAO,MAAM,CAAC;IAE1B,MAAM,QAAQ,GAAG,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;IACrC,IAAI,QAAQ;QAAE,OAAO,QAAQ,CAAC;IAE9B,MAAM,OAAO,GAAG,mBAAmB,CAAC,MAAM,CAAC,CAAC;IAC5C,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IAC7B,IAAI,CAAC;QACH,OAAO,MAAM,OAAO,CAAC;IACvB,CAAC;YAAS,CAAC;QACT,+FAA+F;QAC/F,kEAAkE;QAClE,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IACzB,CAAC;AACH,CAAC;AAED,KAAK,UAAU,mBAAmB,CAAC,MAAc;IAC/C,MAAM,IAAI,GAAG,MAAM,cAAc,EAAE,CAAC;IACpC,IAAI,CAAC,IAAI;QAAE,MAAM,IAAI,KAAK,CAAC,oDAAoD,CAAC,CAAC;IAEjF,IAAI,MAAM,KAAK,UAAU;QAAE,MAAM,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAE7E,IAAI,EAAgC,CAAC;IACrC,IAAI,CAAC;QACH,EAAE,GAAG,IAAI,IAAI,CAAC,MAAM,CAAC,CAAC;QACtB,EAAE,CAAC,IAAI,CAAC,2BAA2B,CAAC,CAAC;QACrC,EAAE,CAAC,IAAI,CAAC,4BAA4B,CAAC,CAAC;QACtC,0FAA0F;QAC1F,2FAA2F;QAC3F,4FAA4F;QAC5F,+FAA+F;QAC/F,8FAA8F;QAC9F,gGAAgG;QAChG,2FAA2F;QAC3F,4FAA4F;QAC5F,gGAAgG;QAChG,sCAAsC;QACtC,EAAE,CAAC,IAAI,CAAC,kCAAkC,CAAC,CAAC;QAC5C,EAAE,CAAC,IAAI,CAAC,0BAA0B,CAAC,CAAC;QACpC,EAAE,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;IACtB,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,yFAAyF;QACzF,0FAA0F;QAC1F,sFAAsF;QACtF,oEAAoE;QACpE,IAAI,CAAC;YACH,EAAE,EAAE,KAAK,EAAE,CAAC;QACd,CAAC;QAAC,MAAM,CAAC;YACP,kEAAkE;QACpE,CAAC;QACD,wFAAwF;QACxF,yEAAyE;QACzE,kBAAkB,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;IAClC,CAAC;IAED,8FAA8F;IAC9F,2FAA2F;IAC3F,yFAAyF;IACzF,iGAAiG;IACjG,gFAAgF;IAChF,IAAI,MAA0B,CAAC;IAC/B,IAAI,CAAC;QACH,MAAM,GAAG,aAAa,CAAC,EAAE,EAAE,gBAAgB,CAAC,CAAC;IAC/C,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,IAAI,CAAC;YAAC,EAAE,CAAC,KAAK,EAAE,CAAC;QAAC,CAAC;QAAC,MAAM,CAAC,CAAC,uDAAuD,CAAC,CAAC;QACrF,kBAAkB,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;IAClC,CAAC;IAED,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;QACzB,cAAc,CAAC,EAAE,EAAE,gBAAgB,EAAE,MAAM,CAAC,cAAc,CAAC,CAAC,CAAC;IAC/D,CAAC;SAAM,IAAI,MAAM,CAAC,MAAM,CAAC,GAAG,cAAc,EAAE,CAAC;QAC3C,IAAI,CAAC;YAAC,EAAE,CAAC,KAAK,EAAE,CAAC;QAAC,CAAC;QAAC,MAAM,CAAC,CAAC,sDAAsD,CAAC,CAAC;QACpF,2FAA2F;QAC3F,4DAA4D;QAC5D,oFAAoF;QACpF,+FAA+F;QAC/F,+DAA+D;QAC/D,MAAM,IAAI,iBAAiB,CACzB,YAAY,MAAM,6CAA6C,MAAM,OAAO,cAAc,0BAA0B,EACpH,gBAAgB,EAChB,MAAM,CACP,CAAC;IACJ,CAAC;SAAM,IAAI,MAAM,CAAC,MAAM,CAAC,GAAG,cAAc,EAAE,CAAC;QAC3C,uFAAuF;QACvF,2CAA2C;QAC3C,IAAI,CAAC;YACH,EAAE,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC;YAC3B,sFAAsF;YACtF,qFAAqF;YACrF,yFAAyF;YACzF,yFAAyF;YACzF,4FAA4F;YAC5F,qFAAqF;YACrF,yFAAyF;YACzF,wFAAwF;YACxF,MAAM,OAAO,GAAG,MAAM,CAAC,aAAa,CAAC,EAAE,EAAE,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC;YACjE,IAAI,OAAO,GAAG,cAAc,IAAI,OAAO,GAAG,CAAC,EAAE,CAAC;gBAC5C,EAAE,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC;gBAC9B,sFAAsF;gBACtF,uFAAuF;gBACvF,uFAAuF;gBACvF,wFAAwF;gBACxF,oFAAoF;gBACpF,cAAc,CAAC,EAAE,EAAE,oBAAoB,EAAE,GAAG,CAAC,CAAC;YAChD,CAAC;YACD,IAAI,OAAO,GAAG,cAAc,EAAE,CAAC;gBAC7B,cAAc,CAAC,EAAE,EAAE,gBAAgB,EAAE,MAAM,CAAC,cAAc,CAAC,CAAC,CAAC;YAC/D,CAAC;YACD,EAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QACpB,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,eAAe,CAAC,EAAE,CAAC,CAAC;YACpB,IAAI,CAAC;gBAAC,EAAE,CAAC,KAAK,EAAE,CAAC;YAAC,CAAC;YAAC,MAAM,CAAC,CAAC,kBAAkB,CAAC,CAAC;YAChD,kBAAkB,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;QAClC,CAAC;IACH,CAAC;IAED,WAAW,CAAC,GAAG,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;IAC5B,OAAO,EAAE,CAAC;AACZ,CAAC;AAED;;;;;GAKG;AACH,MAAM,CAAC,MAAM,8BAA8B,GAAG,EAAE,GAAG,IAAI,GAAG,IAAI,CAAC;AAE/D;;;;;;;;;;;GAWG;AACH,MAAM,UAAU,kBAAkB,CAChC,EAAoB,EACpB,MAAc;AACd,uFAAuF;AACvF,cAAc,GAAW,8BAA8B;IAEvD,IAAI,MAAM,KAAK,UAAU;QAAE,OAAO;IAClC,IAAI,QAAgB,CAAC;IACrB,IAAI,CAAC;QACH,QAAQ,GAAG,QAAQ,CAAC,GAAG,MAAM,MAAM,CAAC,CAAC,IAAI,CAAC;IAC5C,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,CAAC,yDAAyD;IACnE,CAAC;IACD,IAAI,QAAQ,GAAG,cAAc;QAAE,OAAO;IACtC,IAAI,CAAC;QACH,EAAE,CAAC,IAAI,CAAC,iCAAiC,CAAC,CAAC;IAC7C,CAAC;IAAC,MAAM,CAAC;QACP,2DAA2D;IAC7D,CAAC;AACH,CAAC;AAED,kEAAkE;AAClE,MAAM,UAAU,YAAY,CAAC,MAAc;IACzC,MAAM,EAAE,GAAG,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;IACnC,IAAI,CAAC,EAAE;QAAE,OAAO;IAChB,WAAW,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAC3B,IAAI,CAAC;QACH,8FAA8F;QAC9F,8FAA8F;QAC9F,6DAA6D;QAC7D,IAAI,MAAM,KAAK,UAAU,EAAE,CAAC;YAC1B,IAAI,CAAC;gBAAC,EAAE,CAAC,IAAI,CAAC,iCAAiC,CAAC,CAAC;YAAC,CAAC;YAAC,MAAM,CAAC,CAAC,mCAAmC,CAAC,CAAC;QACnG,CAAC;QACD,EAAE,CAAC,KAAK,EAAE,CAAC;IACb,CAAC;IAAC,MAAM,CAAC;QACP,8CAA8C;IAChD,CAAC;AACH,CAAC;AAED,MAAM,UAAU,gBAAgB;IAC9B,KAAK,MAAM,IAAI,IAAI,CAAC,GAAG,WAAW,CAAC,IAAI,EAAE,CAAC;QAAE,YAAY,CAAC,IAAI,C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package/dist/storage/sqlite/index-io.d.ts

@@ -44,6 +44,11 @@ export declare function wasLossilyMigrated(dbPath: string): Promise<boolean>;
  * never silently clobbers. Returns true when this call performed the import.
  */
 export declare function importLegacyIndexIfEmpty(dbPath: string, index: CodeIndex): Promise<boolean>;
+/**
+ * Row count for the next page, aimed at the time budget. Extracted so the adaptation can be tested
+ * directly: a disk-bound stall is not reproducible in a unit test, but the decision it forces is.
+ */
+export declare function nextPageRows(currentRows: number, elapsedMs: number): number;
 /** Materialise the whole index. Returns null when the db has never been written to. */
 export declare function loadIndexSqlite(dbPath: string): Promise<CodeIndex | null>;
 //# sourceMappingURL=index-io.d.ts.map

package/dist/storage/sqlite/index-io.d.ts.map

@@ -1 +1 @@
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