codesift-mcp 0.15.5 → 0.17.0

package/dist/search/bm25.js

@@ -73,44 +73,67 @@ function countTermFrequencies(tokens) {
     }
     return tf;
 }
-export function buildBM25Index(symbols) {
-    const fieldNames = ["name", "signature", "docstring", "body", "comments"];
-    const fields = {
-        name: new Map(),
-        signature: new Map(),
-        docstring: new Map(),
-        body: new Map(),
-        comments: new Map(),
+/**
+ * Symbols ingested per turn before the event loop gets one.
+ *
+ * Building this index is the single longest synchronous burst in the process. Measured on the
+ * largest real index here (372,949 symbols, 20,132 files): **19.5 seconds during which a 20 ms
+ * timer fired ZERO times**. In the shared daemon that is 19.5 seconds where nothing is answered —
+ * not another client's search, not `/health` — and it is the largest single contributor to what
+ * users reported as "CodeSift is down".
+ *
+ * The split matters for where to yield: 18.3 s of that is the tokenise-and-map loop below, and only
+ * 1.2 s the import-centrality pass after it. So the ingest loop is what yields.
+ */
+/** Module scope now that ingestion is extracted — it was a local of the old single function. */
+const fieldNames = ["name", "signature", "docstring", "body", "comments"];
+const SYMBOLS_PER_TURN = 2000;
+function yieldToEventLoop() {
+    return new Promise((resolve) => setImmediate(resolve));
+}
+function newAccumulator() {
+    return {
+        fields: {
+            name: new Map(), signature: new Map(), docstring: new Map(),
+            body: new Map(), comments: new Map(),
+        },
+        totalFieldLengths: { name: 0, signature: 0, docstring: 0, body: 0, comments: 0 },
+        symbolMap: new Map(),
+        fieldLengths: new Map(),
     };
-    const totalFieldLengths = {
-        name: 0,
-        signature: 0,
-        docstring: 0,
-        body: 0,
-        comments: 0,
+}
+/** One symbol into the inverted index. Extracted so both builders run byte-identical work. */
+function ingestSymbol(acc, symbol) {
+    acc.symbolMap.set(symbol.id, symbol);
+    const fieldTokens = getFieldTokens(symbol);
+    const lengths = {
+        name: 0, signature: 0, docstring: 0, body: 0, comments: 0,
     };
-    const symbolMap = new Map();
-    const fieldLengths = new Map();
-    for (const symbol of symbols) {
-        symbolMap.set(symbol.id, symbol);
-        const fieldTokens = getFieldTokens(symbol);
-        const lengths = { name: 0, signature: 0, docstring: 0, body: 0, comments: 0 };
-        for (const field of fieldNames) {
-            const tokens = fieldTokens[field];
-            totalFieldLengths[field] += tokens.length;
-            lengths[field] = tokens.length;
-            const tf = countTermFrequencies(tokens);
-            for (const [token, freq] of tf) {
-                let postings = fields[field].get(token);
-                if (!postings) {
-                    postings = new Map();
-                    fields[field].set(token, postings);
-                }
-                postings.set(symbol.id, freq);
+    for (const field of fieldNames) {
+        const tokens = fieldTokens[field];
+        acc.totalFieldLengths[field] += tokens.length;
+        lengths[field] = tokens.length;
+        const tf = countTermFrequencies(tokens);
+        for (const [token, freq] of tf) {
+            let postings = acc.fields[field].get(token);
+            if (!postings) {
+                postings = new Map();
+                acc.fields[field].set(token, postings);
             }
+            postings.set(symbol.id, freq);
         }
-        fieldLengths.set(symbol.id, lengths);
     }
+    acc.fieldLengths.set(symbol.id, lengths);
+}
+/**
+ * Averages plus import centrality — 1.2 s of the 19.5 on the largest index, so it stays synchronous.
+ *
+ * The inner `for (const file of allFiles)` is a linear scan per import match, i.e. O(imports x files).
+ * At 6% of the build it was not worth changing while fixing the blocking, but it is the obvious next
+ * thing if this pass ever grows.
+ */
+function finishBuild(acc, symbols) {
+    const { fields, totalFieldLengths, symbolMap, fieldLengths } = acc;
     const docCount = symbols.length;
     const avgFieldLengths = {
         name: docCount > 0 ? totalFieldLengths.name / docCount : 0,
@@ -147,7 +170,109 @@ export function buildBM25Index(symbols) {
     for (const [file, count] of importCount) {
         centrality.set(file, Math.log2(1 + count));
     }
-    return { fields, avgFieldLengths, docCount, symbols: symbolMap, centrality, fieldLengths };
+    return { fields, avgFieldLengths, docCount, symbols: symbolMap, centrality, fieldLengths, totalFieldLengths };
+}
+function recomputeAverages(index) {
+    const n = index.docCount;
+    for (const field of fieldNames) {
+        index.avgFieldLengths[field] = n > 0 ? index.totalFieldLengths[field] / n : 0;
+    }
+}
+/**
+ * Undo one symbol's contribution to the inverted index.
+ *
+ * No reverse token map is needed: the tokens a symbol contributed are a pure function of the
+ * symbol, and the symbol itself is still in `index.symbols`. Re-deriving them is exact and costs
+ * one `getFieldTokens` call, against a reverse map that would have to be kept correct forever.
+ *
+ * Field lengths come from the STORED record rather than the re-derived tokens, so the running
+ * totals stay symmetric with what ingest actually added even if tokenisation ever changes under a
+ * long-lived index.
+ */
+function removeSymbolFromIndex(index, symbol) {
+    const fieldTokens = getFieldTokens(symbol);
+    const stored = index.fieldLengths.get(symbol.id);
+    for (const field of fieldNames) {
+        const tokens = fieldTokens[field];
+        index.totalFieldLengths[field] -= stored ? stored[field] : tokens.length;
+        const postings = index.fields[field];
+        for (const token of new Set(tokens)) {
+            const forToken = postings.get(token);
+            if (!forToken)
+                continue;
+            forToken.delete(symbol.id);
+            // A token nobody carries any more must go, or the vocabulary grows without bound across a
+            // long-lived daemon and every idf denominator drifts.
+            if (forToken.size === 0)
+                postings.delete(token);
+        }
+    }
+    index.symbols.delete(symbol.id);
+    index.fieldLengths.delete(symbol.id);
+    index.docCount--;
+}
+/**
+ * Swap one file's symbols in place, instead of throwing the whole index away.
+ *
+ * Editing a single file used to delete the repository's entire BM25 index, and the next search
+ * rebuilt it from scratch — measured 6.8 s on a 372k-symbol repository, against 952 `index_file`
+ * calls in a week. The agent loop is edit-then-search, so that rebuild was being paid constantly.
+ *
+ * `centrality` is deliberately NOT recomputed. It is an O(imports x files) scan over every symbol
+ * in the repository — the thing this function exists to avoid — and it is a ranking bonus derived
+ * from a substring heuristic, not a correctness input. One file's imports moving leaves it
+ * marginally stale until the next full build; a 6.8 s pause would not.
+ */
+export function updateBM25ForFile(index, file, symbols) {
+    // Select by the STORED symbol's file, never by parsing the incoming ids: ids are
+    // `repo:file:name:line` and are documented as non-unique, so an incoming id can collide with a
+    // symbol that lives in a different file. Matching on the stored record cannot touch it.
+    const stale = [];
+    for (const existing of index.symbols.values()) {
+        if (existing.file === file)
+            stale.push(existing);
+    }
+    for (const symbol of stale)
+        removeSymbolFromIndex(index, symbol);
+    const acc = {
+        fields: index.fields,
+        totalFieldLengths: index.totalFieldLengths,
+        symbolMap: index.symbols,
+        fieldLengths: index.fieldLengths,
+    };
+    for (const symbol of symbols) {
+        ingestSymbol(acc, symbol);
+        index.docCount++;
+    }
+    recomputeAverages(index);
+}
+/**
+ * Synchronous build. Correct, and fine for small inputs — the tool-ranker index is ~150 entries.
+ * Do NOT use it on a repository index inside the daemon: see buildBM25IndexYielding.
+ */
+export function buildBM25Index(symbols) {
+    const acc = newAccumulator();
+    for (const symbol of symbols)
+        ingestSymbol(acc, symbol);
+    return finishBuild(acc, symbols);
+}
+/**
+ * Same index, built without monopolising the event loop.
+ *
+ * Identical work and identical output — it simply hands the loop a turn every SYMBOLS_PER_TURN
+ * symbols, so other clients keep getting answers while a large repository is indexed.
+ */
+export async function buildBM25IndexYielding(symbols) {
+    const acc = newAccumulator();
+    let sinceYield = 0;
+    for (const symbol of symbols) {
+        ingestSymbol(acc, symbol);
+        if (++sinceYield >= SYMBOLS_PER_TURN) {
+            sinceYield = 0;
+            await yieldToEventLoop();
+        }
+    }
+    return finishBuild(acc, symbols);
 }
 export function searchBM25(index, query, topK, fieldWeights) {
     if (index.docCount === 0 || !query.trim()) {

package/dist/search/bm25.js.map

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package/dist/search/embed-gate.d.ts

@@ -0,0 +1,17 @@
+/**
+ * Run `fn` with at most `limit` others.
+ *
+ * FIFO, so a batch that has waited longest goes next — a stack would starve the first arrival under
+ * sustained load, which is exactly the caller whose timeout is closest to firing.
+ */
+export declare function withEmbedSlot<T>(fn: () => Promise<T>, options?: {
+    env?: NodeJS.ProcessEnv;
+}): Promise<T>;
+/** Tests need to observe the gate rather than infer it from timing. */
+export declare function embedGateStateForTesting(): {
+    active: number;
+    waiting: number;
+};
+/** Tests need a clean slate between cases. */
+export declare function resetEmbedGateForTesting(): void;
+//# sourceMappingURL=embed-gate.d.ts.map

package/dist/search/embed-gate.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"embed-gate.d.ts","sourceRoot":"","sources":["../../src/search/embed-gate.ts"],"names":[],"mappings":"AA8BA;;;;;GAKG;AACH,wBAAsB,aAAa,CAAC,CAAC,EACnC,EAAE,EAAE,MAAM,OAAO,CAAC,CAAC,CAAC,EACpB,OAAO,CAAC,EAAE;IAAE,GAAG,CAAC,EAAE,MAAM,CAAC,UAAU,CAAA;CAAE,GACpC,OAAO,CAAC,CAAC,CAAC,CAiBZ;AAED,uEAAuE;AACvE,wBAAgB,wBAAwB,IAAI;IAAE,MAAM,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAE9E;AAED,8CAA8C;AAC9C,wBAAgB,wBAAwB,IAAI,IAAI,CAG/C"}

package/dist/search/embed-gate.js

@@ -0,0 +1,64 @@
+/**
+ * Cap on how many embedding requests are in flight at once.
+ *
+ * Nothing limited them, and the remote does: `OLLAMA_NUM_PARALLEL=4` on the tailnet host this
+ * machine embeds against. So the daemon fired unbounded concurrent batches at a server that serves
+ * four, everything past the fourth queued until it exceeded the client's timeout, and
+ * `embedBatchWithStallRetry` answered each timeout by splitting the batch in two — producing MORE
+ * requests against the same queue. That is a congestion collapse we cause ourselves, and it is what
+ * filled `daemon.err.log` with hundreds of `embed batch of N stalled … retrying as N/2+N/2` lines
+ * and left the daemon unable to answer /health for fifteen minutes after a restart.
+ *
+ * A gate does not make embedding slower: the work was already serialised by the remote. It makes
+ * the QUEUE visible to us instead of hidden behind timeouts, so a batch waits rather than failing
+ * and multiplying.
+ *
+ * Default 4 to match the common Ollama setting. `CODESIFT_EMBED_CONCURRENCY` overrides it — a
+ * bigger GPU host or a hosted provider can take more, and a value of 0 or less disables the gate
+ * for callers who know their provider is unmetered.
+ */
+const DEFAULT_CONCURRENCY = 4;
+function configuredLimit(env) {
+    const raw = Number(env["CODESIFT_EMBED_CONCURRENCY"]);
+    if (Number.isFinite(raw))
+        return Math.floor(raw);
+    return DEFAULT_CONCURRENCY;
+}
+let active = 0;
+const waiting = [];
+/**
+ * Run `fn` with at most `limit` others.
+ *
+ * FIFO, so a batch that has waited longest goes next — a stack would starve the first arrival under
+ * sustained load, which is exactly the caller whose timeout is closest to firing.
+ */
+export async function withEmbedSlot(fn, options) {
+    const limit = configuredLimit(options?.env ?? process.env);
+    if (limit <= 0)
+        return fn();
+    if (active >= limit) {
+        await new Promise((resolve) => waiting.push(resolve));
+    }
+    active++;
+    try {
+        return await fn();
+    }
+    finally {
+        active--;
+        // Release in arrival order. `shift()` on an array this short costs nothing, and the ordering is
+        // the property that matters.
+        const next = waiting.shift();
+        if (next)
+            next();
+    }
+}
+/** Tests need to observe the gate rather than infer it from timing. */
+export function embedGateStateForTesting() {
+    return { active, waiting: waiting.length };
+}
+/** Tests need a clean slate between cases. */
+export function resetEmbedGateForTesting() {
+    active = 0;
+    waiting.length = 0;
+}
+//# sourceMappingURL=embed-gate.js.map

package/dist/search/embed-gate.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"embed-gate.js","sourceRoot":"","sources":["../../src/search/embed-gate.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AACH,MAAM,mBAAmB,GAAG,CAAC,CAAC;AAE9B,SAAS,eAAe,CAAC,GAAsB;IAC7C,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,4BAA4B,CAAC,CAAC,CAAC;IACtD,IAAI,MAAM,CAAC,QAAQ,CAAC,GAAG,CAAC;QAAE,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;IACjD,OAAO,mBAAmB,CAAC;AAC7B,CAAC;AAED,IAAI,MAAM,GAAG,CAAC,CAAC;AACf,MAAM,OAAO,GAAsB,EAAE,CAAC;AAEtC;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,aAAa,CACjC,EAAoB,EACpB,OAAqC;IAErC,MAAM,KAAK,GAAG,eAAe,CAAC,OAAO,EAAE,GAAG,IAAI,OAAO,CAAC,GAAG,CAAC,CAAC;IAC3D,IAAI,KAAK,IAAI,CAAC;QAAE,OAAO,EAAE,EAAE,CAAC;IAE5B,IAAI,MAAM,IAAI,KAAK,EAAE,CAAC;QACpB,MAAM,IAAI,OAAO,CAAO,CAAC,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC;IAC9D,CAAC;IACD,MAAM,EAAE,CAAC;IACT,IAAI,CAAC;QACH,OAAO,MAAM,EAAE,EAAE,CAAC;IACpB,CAAC;YAAS,CAAC;QACT,MAAM,EAAE,CAAC;QACT,gGAAgG;QAChG,6BAA6B;QAC7B,MAAM,IAAI,GAAG,OAAO,CAAC,KAAK,EAAE,CAAC;QAC7B,IAAI,IAAI;YAAE,IAAI,EAAE,CAAC;IACnB,CAAC;AACH,CAAC;AAED,uEAAuE;AACvE,MAAM,UAAU,wBAAwB;IACtC,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC;AAC7C,CAAC;AAED,8CAA8C;AAC9C,MAAM,UAAU,wBAAwB;IACtC,MAAM,GAAG,CAAC,CAAC;IACX,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC;AACrB,CAAC"}

package/dist/search/semantic.d.ts.map

@@ -1 +1 @@
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package/dist/search/semantic.js

@@ -1,3 +1,4 @@
+import { withEmbedSlot } from "./embed-gate.js";
 import { importTransformers, localEmbeddingRemedy } from "./optional-transformers.js";
 import { StaticEmbeddingProvider } from "./static-embedding-provider.js";
 const MAX_SYMBOL_SOURCE_CHARS = 200;
@@ -232,12 +233,14 @@ export class OllamaProvider {
         // /api/embeddings once per text — 90K sequential HTTP round-trips for a big
         // repo, which throws away most of the GPU speedup Ollama gives on Apple
         // Silicon. /api/embed embeds the whole array in one request.
-        const response = await fetch(`${this.baseUrl}/api/embed`, {
+        // Through the gate: the remote serves a fixed number at a time, and firing more than that at it
+        // turns queueing into timeouts, and timeouts into retries that queue again. See embed-gate.ts.
+        const response = await withEmbedSlot(() => fetch(`${this.baseUrl}/api/embed`, {
             method: "POST",
             headers: { "Content-Type": "application/json" },
             body: JSON.stringify({ model: this.model, input: capped }),
             signal: AbortSignal.timeout(embeddingTimeoutMs(capped)),
-        });
+        }));
         if (!response.ok) {
             // SEC-004: log raw body to stderr only — do not forward to the MCP client.
             const body = await response.text();

package/dist/search/semantic.js.map

@@ -1 +1 @@
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package/dist/server-helpers/health-vitals.d.ts

@@ -0,0 +1,45 @@
+/**
+ * What `/health` has to be able to say.
+ *
+ * Three separate incidents in one week produced the SAME symptom at the client — sessions reporting
+ * "CODESIFT UNAVAILABLE" — and had three unrelated causes: CPU starvation at load 235, an OOM
+ * crash-loop (15.1 GB → 16.0 GB → restart → repeat), and disk saturation at 50,835 IOPS with the
+ * process in uninterruptible I/O. Each took its own investigation to separate.
+ *
+ * `/health` answered `{"status":"ok"}` throughout all three. It reported liveness, which was never
+ * the question: the daemon was alive every time. The question is whether it can SERVE, and the two
+ * differ exactly when it matters.
+ *
+ * So this reports the quantities that actually moved, and nothing that did not:
+ *
+ *   - event-loop lag: the one number that captures "answering slowly" whatever the cause, because
+ *     every one of the three ended with requests queued behind a blocked thread;
+ *   - heap against the ceiling, which is what an OOM loop walks up before each crash and what no
+ *     liveness check can see;
+ *   - uptime, because a crash-loop is invisible in a snapshot — a fresh process looks healthy, and
+ *     only a resetting uptime says it is the fourth one this hour.
+ */
+export interface Vitals {
+    /** Milliseconds the event loop was late on a timer it should have run immediately. */
+    event_loop_lag_ms: number;
+    heap_used_mb: number;
+    heap_limit_mb: number;
+    heap_used_pct: number;
+    rss_mb: number;
+    uptime_s: number;
+}
+/**
+ * Sample the loop's lateness continuously, because measuring it inside the request would measure a
+ * loop that has, by definition, just reached our handler. The interesting value is how late the
+ * loop was while nobody was asking.
+ */
+export declare function startVitals(intervalMs?: number): void;
+export declare function stopVitals(): void;
+/** Exported for tests, which cannot wait 500 ms per case. */
+export declare function setEventLoopLagForTesting(ms: number): void;
+export declare function readVitals(): Vitals;
+export declare function classifyVitals(v: Vitals): {
+    status: "ok" | "busy";
+    reasons: string[];
+};
+//# sourceMappingURL=health-vitals.d.ts.map

package/dist/server-helpers/health-vitals.d.ts.map

@@ -0,0 +1 @@
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package/dist/server-helpers/health-vitals.js

@@ -0,0 +1,77 @@
+import { totalmem } from "node:os";
+import { memoryUsage } from "node:process";
+let lagMs = 0;
+let timer = null;
+const SAMPLE_INTERVAL_MS = 500;
+/**
+ * Sample the loop's lateness continuously, because measuring it inside the request would measure a
+ * loop that has, by definition, just reached our handler. The interesting value is how late the
+ * loop was while nobody was asking.
+ */
+export function startVitals(intervalMs = SAMPLE_INTERVAL_MS) {
+    if (timer)
+        return;
+    let expected = Date.now() + intervalMs;
+    timer = setInterval(() => {
+        const now = Date.now();
+        lagMs = Math.max(0, now - expected);
+        expected = now + intervalMs;
+    }, intervalMs);
+    // Must never hold the process open: a daemon told to exit exits.
+    timer.unref();
+}
+export function stopVitals() {
+    if (timer)
+        clearTimeout(timer);
+    timer = null;
+    lagMs = 0;
+}
+/** Exported for tests, which cannot wait 500 ms per case. */
+export function setEventLoopLagForTesting(ms) {
+    lagMs = ms;
+}
+function heapLimitMb() {
+    // The ceiling this process was actually started with, not a guess: the LaunchAgent passes
+    // --max-old-space-size, and reading it back is the only way the percentage below means anything.
+    const flag = process.execArgv.find((a) => a.startsWith("--max-old-space-size="));
+    const parsed = flag ? Number.parseInt(flag.split("=")[1] ?? "", 10) : Number.NaN;
+    if (Number.isFinite(parsed) && parsed > 0)
+        return parsed;
+    // No flag: V8's default is derived from system memory and is what the OOM crash-loop hit on this
+    // machine (4288 MB on 128 GB of RAM). Approximating it is better than reporting a percentage of
+    // nothing, and the value is only ever used to say "how close are we".
+    return Math.min(4096, Math.max(2048, Math.round(totalmem() / 1024 ** 2 / 32)));
+}
+export function readVitals() {
+    const mem = memoryUsage();
+    const limit = heapLimitMb();
+    const usedMb = mem.heapUsed / 1024 ** 2;
+    return {
+        event_loop_lag_ms: Math.round(lagMs),
+        heap_used_mb: Math.round(usedMb),
+        heap_limit_mb: limit,
+        heap_used_pct: Math.round((usedMb / limit) * 100),
+        rss_mb: Math.round(mem.rss / 1024 ** 2),
+        uptime_s: Math.round(process.uptime()),
+    };
+}
+/**
+ * Degraded is NOT the same as dead, and conflating them is what made every one of those incidents
+ * look like "CodeSift is down" to an agent that could still have used it.
+ *
+ * `busy` keeps the 200: tool calls will be slow, the session should still load its tools and work.
+ * Only `stale` — code replaced under a running process, where every call genuinely fails — is a 503.
+ */
+const LAG_BUSY_MS = 2_000;
+const HEAP_BUSY_PCT = 85;
+export function classifyVitals(v) {
+    const reasons = [];
+    if (v.event_loop_lag_ms >= LAG_BUSY_MS) {
+        reasons.push(`event loop ${v.event_loop_lag_ms} ms late — requests are queueing behind blocking work`);
+    }
+    if (v.heap_used_pct >= HEAP_BUSY_PCT) {
+        reasons.push(`heap ${v.heap_used_mb}/${v.heap_limit_mb} MB (${v.heap_used_pct}%) — an OOM restart drops every in-flight call`);
+    }
+    return reasons.length > 0 ? { status: "busy", reasons } : { status: "ok", reasons };
+}
+//# sourceMappingURL=health-vitals.js.map

package/dist/server-helpers/health-vitals.js.map

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