codeseeker 1.4.0

package/dist/cli/knowledge/graph/services/graph-utility-service.js

@@ -0,0 +1,208 @@
+"use strict";
+/**
+ * Graph Utility Service
+ * Contains helper methods and utility functions for knowledge graph operations
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.GraphUtilityService = void 0;
+const types_1 = require("../types");
+const logger_1 = require("../../../../utils/logger");
+class GraphUtilityService {
+    logger = logger_1.Logger.getInstance().child('GraphUtilityService');
+    generateNodeId(type, name, namespace) {
+        const components = [type, name];
+        if (namespace) {
+            components.push(namespace);
+        }
+        // Create a deterministic ID based on type, name, and namespace
+        const combined = components.join('::');
+        const hash = this.simpleHash(combined);
+        return `${type}_${hash}`;
+    }
+    generateTriadId(subject, predicate, object) {
+        const combined = `${subject}::${predicate}::${object}`;
+        const hash = this.simpleHash(combined);
+        return `triad_${hash}`;
+    }
+    hasConnection(nodeId1, nodeId2, triads) {
+        for (const triad of triads.values()) {
+            if ((triad.subject === nodeId1 && triad.object === nodeId2) ||
+                (triad.subject === nodeId2 && triad.object === nodeId1)) {
+                return true;
+            }
+        }
+        return false;
+    }
+    calculateClusterCoherence(nodes, triads) {
+        if (nodes.length < 2)
+            return 1.0;
+        let totalConnections = 0;
+        let possibleConnections = nodes.length * (nodes.length - 1) / 2;
+        for (let i = 0; i < nodes.length; i++) {
+            for (let j = i + 1; j < nodes.length; j++) {
+                if (this.hasConnection(nodes[i], nodes[j], triads)) {
+                    totalConnections++;
+                }
+            }
+        }
+        return possibleConnections > 0 ? totalConnections / possibleConnections : 0;
+    }
+    groupDuplicates(duplicateTriads) {
+        const groups = [];
+        const processed = new Set();
+        for (const triad of duplicateTriads) {
+            if (processed.has(triad.id))
+                continue;
+            const group = [triad.subject, triad.object];
+            processed.add(triad.id);
+            // Find related duplicates
+            for (const otherTriad of duplicateTriads) {
+                if (otherTriad.id !== triad.id && !processed.has(otherTriad.id)) {
+                    if (group.includes(otherTriad.subject) || group.includes(otherTriad.object)) {
+                        if (!group.includes(otherTriad.subject))
+                            group.push(otherTriad.subject);
+                        if (!group.includes(otherTriad.object))
+                            group.push(otherTriad.object);
+                        processed.add(otherTriad.id);
+                    }
+                }
+            }
+            if (group.length >= 2) {
+                groups.push(group);
+            }
+        }
+        return groups;
+    }
+    async dfsComponent(startNode, nodes, triads, visited) {
+        const component = [];
+        const stack = [startNode];
+        while (stack.length > 0) {
+            const nodeId = stack.pop();
+            if (visited.has(nodeId))
+                continue;
+            visited.add(nodeId);
+            component.push(nodeId);
+            // Find connected nodes
+            for (const triad of triads.values()) {
+                if (triad.subject === nodeId && !visited.has(triad.object) && nodes.has(triad.object)) {
+                    stack.push(triad.object);
+                }
+                else if (triad.object === nodeId && !visited.has(triad.subject) && nodes.has(triad.subject)) {
+                    stack.push(triad.subject);
+                }
+            }
+        }
+        return component;
+    }
+    /**
+     * Calculate clustering coefficient for the graph
+     */
+    calculateClusteringCoefficient(nodes, triads) {
+        let totalCoefficient = 0;
+        let nodeCount = 0;
+        // Build adjacency list
+        const adjacency = {};
+        for (const nodeId of nodes.keys()) {
+            adjacency[nodeId] = new Set();
+        }
+        for (const triad of triads.values()) {
+            if (adjacency[triad.subject] && adjacency[triad.object]) {
+                adjacency[triad.subject].add(triad.object);
+                adjacency[triad.object].add(triad.subject); // Treat as undirected
+            }
+        }
+        for (const nodeId of nodes.keys()) {
+            const neighbors = Array.from(adjacency[nodeId]);
+            const k = neighbors.length;
+            if (k < 2) {
+                continue; // Clustering coefficient is 0 for nodes with < 2 neighbors
+            }
+            let triangles = 0;
+            for (let i = 0; i < neighbors.length; i++) {
+                for (let j = i + 1; j < neighbors.length; j++) {
+                    if (adjacency[neighbors[i]].has(neighbors[j])) {
+                        triangles++;
+                    }
+                }
+            }
+            const possibleTriangles = (k * (k - 1)) / 2;
+            const coefficient = triangles / possibleTriangles;
+            totalCoefficient += coefficient;
+            nodeCount++;
+        }
+        return nodeCount > 0 ? totalCoefficient / nodeCount : 0;
+    }
+    /**
+     * Check if a node is semantically similar to another
+     */
+    isSemanticallySimilar(nodeId1, nodeId2, triads, threshold = 0.7) {
+        // Look for direct similarity relationships
+        for (const triad of triads.values()) {
+            if ((triad.subject === nodeId1 && triad.object === nodeId2) ||
+                (triad.subject === nodeId2 && triad.object === nodeId1)) {
+                if (triad.predicate === types_1.RelationType.IS_SIMILAR_TO ||
+                    triad.predicate === types_1.RelationType.IS_TYPE_OF ||
+                    triad.predicate === types_1.RelationType.RELATES_TO) {
+                    return (triad.confidence || 1.0) >= threshold;
+                }
+            }
+        }
+        return false;
+    }
+    /**
+     * Find all nodes that are semantically related to a given node
+     */
+    findSemanticNeighbors(nodeId, triads, semanticRelations = [
+        types_1.RelationType.IS_SIMILAR_TO,
+        types_1.RelationType.IS_TYPE_OF,
+        types_1.RelationType.RELATES_TO,
+        types_1.RelationType.REPRESENTS
+    ]) {
+        const neighbors = [];
+        for (const triad of triads.values()) {
+            if (semanticRelations.includes(triad.predicate)) {
+                if (triad.subject === nodeId && !neighbors.includes(triad.object)) {
+                    neighbors.push(triad.object);
+                }
+                else if (triad.object === nodeId && !neighbors.includes(triad.subject)) {
+                    neighbors.push(triad.subject);
+                }
+            }
+        }
+        return neighbors;
+    }
+    /**
+     * Calculate semantic density of a subgraph
+     */
+    calculateSemanticDensity(nodeIds, triads) {
+        if (nodeIds.length < 2)
+            return 1.0;
+        const semanticRelations = [
+            types_1.RelationType.IS_SIMILAR_TO,
+            types_1.RelationType.IS_TYPE_OF,
+            types_1.RelationType.RELATES_TO,
+            types_1.RelationType.REPRESENTS
+        ];
+        let semanticConnections = 0;
+        const possibleConnections = nodeIds.length * (nodeIds.length - 1) / 2;
+        for (const triad of triads.values()) {
+            if (semanticRelations.includes(triad.predicate) &&
+                nodeIds.includes(triad.subject) &&
+                nodeIds.includes(triad.object)) {
+                semanticConnections++;
+            }
+        }
+        return possibleConnections > 0 ? semanticConnections / possibleConnections : 0;
+    }
+    simpleHash(str) {
+        let hash = 0;
+        for (let i = 0; i < str.length; i++) {
+            const char = str.charCodeAt(i);
+            hash = ((hash << 5) - hash) + char;
+            hash = hash & hash; // Convert to 32bit integer
+        }
+        return Math.abs(hash).toString(36);
+    }
+}
+exports.GraphUtilityService = GraphUtilityService;
+//# sourceMappingURL=graph-utility-service.js.map

package/dist/cli/knowledge/graph/services/graph-utility-service.js.map

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package/dist/cli/knowledge/graph/types.d.ts

@@ -0,0 +1,272 @@
+/**
+ * Semantic Knowledge Graph Types for CodeSeeker
+ *
+ * A knowledge graph representing code semantics using triads (subject-predicate-object)
+ * to capture relationships between code entities, concepts, and patterns.
+ */
+export interface KnowledgeNode {
+    id: string;
+    type: NodeType;
+    name?: string;
+    namespace?: string;
+    sourceLocation?: SourceLocation;
+    metadata: NodeMetadata;
+    confidence?: number;
+    createdAt: Date;
+    updatedAt: Date;
+}
+export interface KnowledgeTriad {
+    id: string;
+    subject: string;
+    predicate: RelationType;
+    object: string;
+    confidence?: number;
+    source: TriadSource;
+    evidenceType?: string;
+    metadata?: TriadMetadata;
+    createdAt: Date;
+}
+export declare enum NodeType {
+    CLASS = "class",
+    FUNCTION = "function",
+    METHOD = "method",
+    INTERFACE = "interface",
+    VARIABLE = "variable",
+    CONSTANT = "constant",
+    TYPE = "type",
+    ENUM = "enum",
+    NAMESPACE = "namespace",
+    MODULE = "module",
+    PACKAGE = "package",
+    SERVICE = "service",
+    COMPONENT = "component",
+    REPOSITORY = "repository",
+    CONTROLLER = "controller",
+    MODEL = "model",
+    PATTERN = "pattern",
+    CONCEPT = "concept",
+    FEATURE = "feature",
+    BUSINESS_RULE = "business_rule",
+    REQUIREMENT = "requirement",
+    DATABASE_TABLE = "database_table",
+    API_ENDPOINT = "api_endpoint",
+    CONFIGURATION = "configuration",
+    DEPENDENCY = "dependency"
+}
+export declare enum RelationType {
+    EXTENDS = "extends",
+    IMPLEMENTS = "implements",
+    INHERITS_FROM = "inherits_from",
+    CONTAINS = "contains",
+    COMPOSED_OF = "composed_of",
+    PART_OF = "part_of",
+    HAS_METHOD = "has_method",
+    HAS_FIELD = "has_field",
+    CALLS = "calls",
+    INVOKES = "invokes",
+    RETURNS = "returns",
+    ACCEPTS = "accepts",
+    THROWS = "throws",
+    HANDLES = "handles",
+    READS_FROM = "reads_from",
+    WRITES_TO = "writes_to",
+    TRANSFORMS = "transforms",
+    PRODUCES = "produces",
+    CONSUMES = "consumes",
+    DEPENDS_ON = "depends_on",
+    USES = "uses",
+    IMPORTS = "imports",
+    EXPORTS = "exports",
+    REQUIRES = "requires",
+    PROVIDES = "provides",
+    FOLLOWS_PATTERN = "follows_pattern",
+    IMPLEMENTS_PATTERN = "implements_pattern",
+    VIOLATES_PATTERN = "violates_pattern",
+    IS_SIMILAR_TO = "is_similar_to",
+    IS_OPPOSITE_OF = "is_opposite_of",
+    IS_TYPE_OF = "is_type_of",
+    IS_INSTANCE_OF = "is_instance_of",
+    REPRESENTS = "represents",
+    RELATES_TO = "relates_to",
+    SATISFIES = "satisfies",
+    VALIDATES = "validates",
+    ENFORCES = "enforces",
+    TRIGGERS = "triggers",
+    DUPLICATES = "duplicates",
+    REFACTORS = "refactors",
+    REPLACES = "replaces",
+    IMPROVES = "improves"
+}
+export interface SourceLocation {
+    filePath: string;
+    startLine: number;
+    endLine: number;
+    startColumn?: number;
+    endColumn?: number;
+    repository?: string;
+    commit?: string;
+}
+export interface NodeMetadata {
+    complexity?: number;
+    importance?: number;
+    stability?: number;
+    testCoverage?: number;
+    documentation?: string;
+    tags: string[];
+    visibility?: 'public' | 'private' | 'protected' | 'internal';
+    [key: string]: any;
+}
+export interface TriadMetadata {
+    strength?: number;
+    frequency?: number;
+    context?: string;
+    evidence?: Evidence[];
+    [key: string]: any;
+}
+export interface Evidence {
+    type: EvidenceType;
+    source: string;
+    location?: SourceLocation;
+    confidence: number;
+    description: string;
+}
+export declare enum EvidenceType {
+    STATIC_ANALYSIS = "static_analysis",
+    DYNAMIC_ANALYSIS = "dynamic_analysis",
+    PATTERN_MATCHING = "pattern_matching",
+    SEMANTIC_SIMILARITY = "semantic_similarity",
+    DOCUMENTATION = "documentation",
+    TEST_ANALYSIS = "test_analysis",
+    USER_ANNOTATION = "user_annotation"
+}
+export declare enum TriadSource {
+    STATIC_ANALYZER = "static_analyzer",
+    AST_PARSER = "ast_parser",
+    DEPENDENCY_ANALYZER = "dependency_analyzer",
+    PATTERN_DETECTOR = "pattern_detector",
+    SEMANTIC_ANALYZER = "semantic_analyzer",
+    USER_INPUT = "user_input",
+    MACHINE_LEARNING = "machine_learning",
+    GIT_ANALYSIS = "git_analysis"
+}
+export interface GraphQuery {
+    nodes?: NodeQuery;
+    triads?: TriadQuery;
+    traversal?: TraversalQuery;
+    limit?: number;
+    offset?: number;
+    nodeType?: string;
+    subject?: string;
+    predicate?: RelationType;
+    object?: string;
+    evidenceType?: string;
+    confidence?: number;
+    metadata?: Record<string, any>;
+}
+export interface NodeQuery {
+    types?: NodeType[];
+    names?: string[];
+    namespaces?: string[];
+    metadata?: Record<string, any>;
+    sourceLocation?: SourceLocationQuery;
+}
+export interface TriadQuery {
+    subjects?: string[];
+    predicates?: RelationType[];
+    objects?: string[];
+    confidence?: {
+        min?: number;
+        max?: number;
+    };
+    sources?: TriadSource[];
+}
+export interface TraversalQuery {
+    startNodes: string[];
+    relations: RelationType[];
+    direction: 'incoming' | 'outgoing' | 'both';
+    maxDepth?: number;
+    filters?: NodeQuery;
+}
+export interface SourceLocationQuery {
+    filePath?: string;
+    filePattern?: string;
+    lineRange?: {
+        start: number;
+        end: number;
+    };
+}
+export interface GraphAnalysis {
+    nodeCount: number;
+    triadCount: number;
+    relationshipDistribution: Record<RelationType, number>;
+    nodeTypeDistribution: Record<NodeType, number>;
+    centralityScores: Record<string, number>;
+    clusteringCoefficient: number;
+    stronglyConnectedComponents: string[][];
+}
+export interface SemanticCluster {
+    id: string;
+    nodes: string[];
+    triads: string[];
+    semanticScore: number;
+    density: number;
+    name?: string;
+    coherenceScore?: number;
+    representativeTriads?: KnowledgeTriad[];
+    description?: string;
+}
+export interface ArchitecturalInsight {
+    type: string;
+    pattern?: string;
+    confidence: number;
+    description: string;
+    nodes: string[];
+    reasoning?: string;
+    recommendation: string;
+    impact: 'low' | 'medium' | 'high';
+    affectedNodes?: string[];
+    recommendations?: string[];
+    evidence?: Evidence[];
+}
+export declare enum InsightType {
+    DESIGN_PATTERN_DETECTED = "design_pattern_detected",
+    ANTI_PATTERN_DETECTED = "anti_pattern_detected",
+    ARCHITECTURAL_VIOLATION = "architectural_violation",
+    COUPLING_ISSUE = "coupling_issue",
+    COHESION_OPPORTUNITY = "cohesion_opportunity",
+    REFACTORING_OPPORTUNITY = "refactoring_opportunity",
+    DUPLICATE_LOGIC = "duplicate_logic",
+    MISSING_ABSTRACTION = "missing_abstraction"
+}
+export interface GraphMutation {
+    addNodes?: KnowledgeNode[];
+    addTriads?: KnowledgeTriad[];
+    updateNodes?: Partial<KnowledgeNode>[];
+    updateTriads?: Partial<KnowledgeTriad>[];
+    removeNodes?: string[];
+    removeTriads?: string[];
+}
+export interface GraphSnapshot {
+    timestamp: Date;
+    nodeCount: number;
+    triadCount: number;
+    hash: string;
+    metadata: Record<string, any>;
+}
+export interface GraphDiff {
+    fromSnapshot: string;
+    toSnapshot: string;
+    addedNodes: KnowledgeNode[];
+    removedNodes: KnowledgeNode[];
+    addedTriads: KnowledgeTriad[];
+    removedTriads: KnowledgeTriad[];
+    modifiedNodes: Array<{
+        before: KnowledgeNode;
+        after: KnowledgeNode;
+    }>;
+    modifiedTriads: Array<{
+        before: KnowledgeTriad;
+        after: KnowledgeTriad;
+    }>;
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/cli/knowledge/graph/types.d.ts.map

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package/dist/cli/knowledge/graph/types.js

@@ -0,0 +1,127 @@
+"use strict";
+/**
+ * Semantic Knowledge Graph Types for CodeSeeker
+ *
+ * A knowledge graph representing code semantics using triads (subject-predicate-object)
+ * to capture relationships between code entities, concepts, and patterns.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.InsightType = exports.TriadSource = exports.EvidenceType = exports.RelationType = exports.NodeType = void 0;
+var NodeType;
+(function (NodeType) {
+    // Code Entities
+    NodeType["CLASS"] = "class";
+    NodeType["FUNCTION"] = "function";
+    NodeType["METHOD"] = "method";
+    NodeType["INTERFACE"] = "interface";
+    NodeType["VARIABLE"] = "variable";
+    NodeType["CONSTANT"] = "constant";
+    NodeType["TYPE"] = "type";
+    NodeType["ENUM"] = "enum";
+    NodeType["NAMESPACE"] = "namespace";
+    NodeType["MODULE"] = "module";
+    NodeType["PACKAGE"] = "package";
+    // Architectural Entities
+    NodeType["SERVICE"] = "service";
+    NodeType["COMPONENT"] = "component";
+    NodeType["REPOSITORY"] = "repository";
+    NodeType["CONTROLLER"] = "controller";
+    NodeType["MODEL"] = "model";
+    // Conceptual Entities
+    NodeType["PATTERN"] = "pattern";
+    NodeType["CONCEPT"] = "concept";
+    NodeType["FEATURE"] = "feature";
+    NodeType["BUSINESS_RULE"] = "business_rule";
+    NodeType["REQUIREMENT"] = "requirement";
+    // Infrastructure
+    NodeType["DATABASE_TABLE"] = "database_table";
+    NodeType["API_ENDPOINT"] = "api_endpoint";
+    NodeType["CONFIGURATION"] = "configuration";
+    NodeType["DEPENDENCY"] = "dependency";
+})(NodeType || (exports.NodeType = NodeType = {}));
+var RelationType;
+(function (RelationType) {
+    // Structural Relationships
+    RelationType["EXTENDS"] = "extends";
+    RelationType["IMPLEMENTS"] = "implements";
+    RelationType["INHERITS_FROM"] = "inherits_from";
+    RelationType["CONTAINS"] = "contains";
+    RelationType["COMPOSED_OF"] = "composed_of";
+    RelationType["PART_OF"] = "part_of";
+    RelationType["HAS_METHOD"] = "has_method";
+    RelationType["HAS_FIELD"] = "has_field";
+    // Behavioral Relationships
+    RelationType["CALLS"] = "calls";
+    RelationType["INVOKES"] = "invokes";
+    RelationType["RETURNS"] = "returns";
+    RelationType["ACCEPTS"] = "accepts";
+    RelationType["THROWS"] = "throws";
+    RelationType["HANDLES"] = "handles";
+    // Data Flow Relationships
+    RelationType["READS_FROM"] = "reads_from";
+    RelationType["WRITES_TO"] = "writes_to";
+    RelationType["TRANSFORMS"] = "transforms";
+    RelationType["PRODUCES"] = "produces";
+    RelationType["CONSUMES"] = "consumes";
+    // Dependency Relationships
+    RelationType["DEPENDS_ON"] = "depends_on";
+    RelationType["USES"] = "uses";
+    RelationType["IMPORTS"] = "imports";
+    RelationType["EXPORTS"] = "exports";
+    RelationType["REQUIRES"] = "requires";
+    RelationType["PROVIDES"] = "provides";
+    // Pattern Relationships
+    RelationType["FOLLOWS_PATTERN"] = "follows_pattern";
+    RelationType["IMPLEMENTS_PATTERN"] = "implements_pattern";
+    RelationType["VIOLATES_PATTERN"] = "violates_pattern";
+    // Semantic Relationships
+    RelationType["IS_SIMILAR_TO"] = "is_similar_to";
+    RelationType["IS_OPPOSITE_OF"] = "is_opposite_of";
+    RelationType["IS_TYPE_OF"] = "is_type_of";
+    RelationType["IS_INSTANCE_OF"] = "is_instance_of";
+    RelationType["REPRESENTS"] = "represents";
+    RelationType["RELATES_TO"] = "relates_to";
+    // Business Logic Relationships
+    RelationType["SATISFIES"] = "satisfies";
+    RelationType["VALIDATES"] = "validates";
+    RelationType["ENFORCES"] = "enforces";
+    RelationType["TRIGGERS"] = "triggers";
+    // Quality Relationships
+    RelationType["DUPLICATES"] = "duplicates";
+    RelationType["REFACTORS"] = "refactors";
+    RelationType["REPLACES"] = "replaces";
+    RelationType["IMPROVES"] = "improves";
+})(RelationType || (exports.RelationType = RelationType = {}));
+var EvidenceType;
+(function (EvidenceType) {
+    EvidenceType["STATIC_ANALYSIS"] = "static_analysis";
+    EvidenceType["DYNAMIC_ANALYSIS"] = "dynamic_analysis";
+    EvidenceType["PATTERN_MATCHING"] = "pattern_matching";
+    EvidenceType["SEMANTIC_SIMILARITY"] = "semantic_similarity";
+    EvidenceType["DOCUMENTATION"] = "documentation";
+    EvidenceType["TEST_ANALYSIS"] = "test_analysis";
+    EvidenceType["USER_ANNOTATION"] = "user_annotation";
+})(EvidenceType || (exports.EvidenceType = EvidenceType = {}));
+var TriadSource;
+(function (TriadSource) {
+    TriadSource["STATIC_ANALYZER"] = "static_analyzer";
+    TriadSource["AST_PARSER"] = "ast_parser";
+    TriadSource["DEPENDENCY_ANALYZER"] = "dependency_analyzer";
+    TriadSource["PATTERN_DETECTOR"] = "pattern_detector";
+    TriadSource["SEMANTIC_ANALYZER"] = "semantic_analyzer";
+    TriadSource["USER_INPUT"] = "user_input";
+    TriadSource["MACHINE_LEARNING"] = "machine_learning";
+    TriadSource["GIT_ANALYSIS"] = "git_analysis";
+})(TriadSource || (exports.TriadSource = TriadSource = {}));
+var InsightType;
+(function (InsightType) {
+    InsightType["DESIGN_PATTERN_DETECTED"] = "design_pattern_detected";
+    InsightType["ANTI_PATTERN_DETECTED"] = "anti_pattern_detected";
+    InsightType["ARCHITECTURAL_VIOLATION"] = "architectural_violation";
+    InsightType["COUPLING_ISSUE"] = "coupling_issue";
+    InsightType["COHESION_OPPORTUNITY"] = "cohesion_opportunity";
+    InsightType["REFACTORING_OPPORTUNITY"] = "refactoring_opportunity";
+    InsightType["DUPLICATE_LOGIC"] = "duplicate_logic";
+    InsightType["MISSING_ABSTRACTION"] = "missing_abstraction";
+})(InsightType || (exports.InsightType = InsightType = {}));
+//# sourceMappingURL=types.js.map

package/dist/cli/knowledge/graph/types.js.map

@@ -0,0 +1 @@
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