circle-ir-ai 2.7.1 → 2.7.2

package/dist/cli/commands/health.js

@@ -1,76 +0,0 @@
-/**
- * Health Score Command
- *
- * Calculates codebase health score across multiple dimensions.
- */
-import * as fs from 'fs';
-import { calculateHealthScore, formatHealthReport, } from '../../health-score/index.js';
-import { getEffectiveOptions } from '../effective-options.js';
-/**
- * Execute health score command.
- */
-export async function executeHealth(args) {
-    const targetPath = args.directory || process.cwd();
-    if (!fs.existsSync(targetPath)) {
-        console.error(`Error: Path not found: ${targetPath}`);
-        return 1;
-    }
-    if (!args.quiet) {
-        console.error(`Calculating health score for ${targetPath}...`);
-    }
-    const eff = getEffectiveOptions(args, targetPath);
-    const options = {
-        includeSecurity: args.healthSecurity,
-        includeSecrets: args.healthSecrets,
-        includeDeadCode: args.healthDeadCode,
-        includeQuality: args.healthQuality,
-        includePerformance: args.healthPerformance,
-        includePatterns: eff.include.length > 0 ? eff.include : undefined,
-        excludePatterns: eff.exclude.length > 0 ? eff.exclude : undefined,
-        onProgress: args.quiet ? undefined : (phase, progress) => {
-            console.error(`[${phase}] ${Math.round(progress * 100)}%`);
-        },
-    };
-    try {
-        const result = await calculateHealthScore(targetPath, options);
-        // Output results
-        if (args.format === 'json') {
-            const output = JSON.stringify(result, null, 2);
-            if (args.output) {
-                fs.writeFileSync(args.output, output);
-                if (!args.quiet) {
-                    console.error(`Output written to ${args.output}`);
-                }
-            }
-            else {
-                console.log(output);
-            }
-        }
-        else {
-            // Summary format
-            const report = formatHealthReport(result);
-            if (args.output) {
-                fs.writeFileSync(args.output, report);
-                if (!args.quiet) {
-                    console.error(`Output written to ${args.output}`);
-                }
-            }
-            else {
-                console.log(report);
-            }
-        }
-        // Exit with error code if health score is below configurable threshold
-        if (args.exitCode && result.overallScore < args.threshold) {
-            if (!args.quiet) {
-                console.error(`Health score ${result.overallScore} is below threshold ${args.threshold}`);
-            }
-            return 1;
-        }
-        return 0;
-    }
-    catch (error) {
-        console.error('Error:', error instanceof Error ? error.message : error);
-        return 1;
-    }
-}
-//# sourceMappingURL=health.js.map

package/dist/cli/commands/health.js.map

@@ -1 +0,0 @@
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package/dist/cli/commands/index.d.ts

@@ -1,30 +0,0 @@
-/**
- * CLI Commands Module
- *
- * Exports all CLI command implementations for use by wrapper CLIs (e.g., cognium-ai).
- * Each command takes CliArgs and returns a Promise<number> exit code.
- */
-export { parseArgs, type CliArgs, type OutputFormat, type Command, type LogLevel, type BundleType } from '../args.js';
-export { buildProgram, type ProgramHandlers, type ActionRunner, type BuildProgramOptions } from '../program.js';
-export { getEffectiveOptions, type EffectiveOptions } from '../effective-options.js';
-export { collectFiles as collectSourceFiles, type CollectedFile, type CollectOptions } from '../file-collection.js';
-export { loadConfig, loadCogniumConfig, convertCogniumConfigToPassOptions, type CogniumConfig, type Suppression, type UserConfig, type ResolvedConfig, } from '../config.js';
-export { executeScan } from './scan.js';
-export { executeTrust, runTrustAnalysis, type TrustAnalysisResult } from './trust.js';
-export { executeCompare } from './compare.js';
-export { executeQuality } from './quality.js';
-export { executeHealth } from './health.js';
-export { executeSecrets } from './secrets.js';
-export { executeDeadCode } from './dead-code.js';
-export { executeMetrics } from './metrics.js';
-export { executeUnderstand } from './understand.js';
-export { executeSpecDiff } from './spec-diff.js';
-export { executeCluster } from './cluster.js';
-export { executeGenerateSpec } from './generate-spec.js';
-export { executeBenchmark } from './benchmark.js';
-export { executeAnalyzeSkill, type AnalyzeSkillOptions } from './analyze-skill.js';
-export { runSwarmAnalysis, type SwarmOptions } from './swarm.js';
-export { runAnalysis, executeAnalyze, type AnalysisOptions } from './analyze.js';
-export { runProjectAnalysis, type ProjectOptions } from './project.js';
-export { loadBenchmarkRunner, type BenchmarkRunnerOptions, type CategoryMetrics, type BenchmarkReport, } from './benchmark-runner.js';
-//# sourceMappingURL=index.d.ts.map

package/dist/cli/commands/index.d.ts.map

@@ -1 +0,0 @@
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package/dist/cli/commands/index.js

@@ -1,36 +0,0 @@
-/**
- * CLI Commands Module
- *
- * Exports all CLI command implementations for use by wrapper CLIs (e.g., cognium-ai).
- * Each command takes CliArgs and returns a Promise<number> exit code.
- */
-// Re-export args types and parser
-export { parseArgs } from '../args.js';
-// Re-export Commander program builder (used by wrapper CLIs to inherit
-// per-command help, LLM defaults, exclude/config wiring).
-export { buildProgram } from '../program.js';
-export { getEffectiveOptions } from '../effective-options.js';
-export { collectFiles as collectSourceFiles } from '../file-collection.js';
-// Re-export config utilities
-export { loadConfig, loadCogniumConfig, convertCogniumConfigToPassOptions, } from '../config.js';
-// Core commands
-export { executeScan } from './scan.js';
-export { executeTrust, runTrustAnalysis } from './trust.js';
-export { executeCompare } from './compare.js';
-export { executeQuality } from './quality.js';
-export { executeHealth } from './health.js';
-export { executeSecrets } from './secrets.js';
-export { executeDeadCode } from './dead-code.js';
-export { executeMetrics } from './metrics.js';
-export { executeUnderstand } from './understand.js';
-export { executeSpecDiff } from './spec-diff.js';
-export { executeCluster } from './cluster.js';
-export { executeGenerateSpec } from './generate-spec.js';
-export { executeBenchmark } from './benchmark.js';
-export { executeAnalyzeSkill } from './analyze-skill.js';
-// Utility functions (for advanced use cases)
-export { runSwarmAnalysis } from './swarm.js';
-export { runAnalysis, executeAnalyze } from './analyze.js';
-export { runProjectAnalysis } from './project.js';
-export { loadBenchmarkRunner, } from './benchmark-runner.js';
-//# sourceMappingURL=index.js.map

package/dist/cli/commands/index.js.map

@@ -1 +0,0 @@
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package/dist/cli/commands/metrics.d.ts

@@ -1,12 +0,0 @@
-/**
- * Metrics Command
- *
- * Computes software metrics using circle-ir's MetricRunner:
- * CK suite (CBO, RFC, LCOM, DIT, NOC, WMC), Halstead, composites (MI, CQI, Bug Hotspot, Refactoring ROI).
- */
-import type { CliArgs } from '../args.js';
-/**
- * Execute metrics command.
- */
-export declare function executeMetrics(args: CliArgs): Promise<number>;
-//# sourceMappingURL=metrics.d.ts.map

package/dist/cli/commands/metrics.d.ts.map

@@ -1 +0,0 @@
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package/dist/cli/commands/metrics.js

@@ -1,231 +0,0 @@
-/**
- * Metrics Command
- *
- * Computes software metrics using circle-ir's MetricRunner:
- * CK suite (CBO, RFC, LCOM, DIT, NOC, WMC), Halstead, composites (MI, CQI, Bug Hotspot, Refactoring ROI).
- */
-import * as fs from 'fs';
-import * as path from 'path';
-import { isAnalyzerInitialized, analyze, } from 'circle-ir';
-import { ensureAnalyzerInitialized } from '../../utils/analyzer-init.js';
-import { collectFiles } from '../file-collection.js';
-import { getEffectiveOptions } from '../effective-options.js';
-// Language extensions are owned by file-collection.ts; we keep a local
-// detectLanguage for the rare single-file case.
-function detectLanguage(filePath) {
-    const ext = path.extname(filePath).toLowerCase();
-    if (['.java'].includes(ext))
-        return 'java';
-    if (['.c', '.h'].includes(ext))
-        return 'c';
-    if (['.cpp', '.cc', '.cxx', '.hpp', '.hxx'].includes(ext))
-        return 'cpp';
-    if (['.js', '.jsx', '.mjs', '.cjs'].includes(ext))
-        return 'javascript';
-    if (['.ts', '.tsx', '.mts', '.cts'].includes(ext))
-        return 'typescript';
-    if (['.py'].includes(ext))
-        return 'python';
-    if (['.rs'].includes(ext))
-        return 'rust';
-    if (['.sh', '.bash'].includes(ext))
-        return 'bash';
-    if (['.html', '.htm'].includes(ext))
-        return 'html';
-    return 'java';
-}
-/**
- * Execute metrics command.
- */
-export async function executeMetrics(args) {
-    const targetPath = args.file || args.directory || process.cwd();
-    if (!fs.existsSync(targetPath)) {
-        console.error(`Error: Path not found: ${targetPath}`);
-        return 1;
-    }
-    if (!args.quiet) {
-        console.error(`Computing metrics for ${targetPath}...`);
-    }
-    if (!isAnalyzerInitialized()) {
-        await ensureAnalyzerInitialized();
-    }
-    try {
-        const eff = getEffectiveOptions(args, targetPath);
-        const isDir = fs.statSync(targetPath).isDirectory();
-        const files = isDir
-            ? collectFiles(targetPath, {
-                include: eff.include,
-                exclude: eff.exclude,
-                maxFiles: args.maxFiles ?? 1000,
-            }).map(f => f.path)
-            : [targetPath];
-        const results = [];
-        const basePath = isDir ? targetPath : path.dirname(targetPath);
-        for (let i = 0; i < files.length; i++) {
-            const filePath = files[i];
-            const relativePath = path.relative(basePath, filePath);
-            if (!args.quiet) {
-                console.error(`[${i + 1}/${files.length}] ${relativePath}`);
-            }
-            try {
-                const content = fs.readFileSync(filePath, 'utf-8');
-                const language = detectLanguage(filePath);
-                const ir = await analyze(content, path.basename(filePath), language);
-                if (ir.metrics && ir.metrics.metrics.length > 0) {
-                    // Filter by metric category if requested
-                    let metrics = ir.metrics.metrics;
-                    if (args.metricCategory.length > 0) {
-                        const allowed = new Set(args.metricCategory);
-                        metrics = metrics.filter(m => allowed.has(m.category));
-                    }
-                    if (metrics.length > 0) {
-                        results.push({
-                            file: relativePath,
-                            language,
-                            metrics,
-                        });
-                    }
-                }
-            }
-            catch {
-                // Skip files that fail to analyze
-            }
-        }
-        // Build summary
-        const byCategory = {};
-        let totalMetrics = 0;
-        for (const r of results) {
-            for (const m of r.metrics) {
-                byCategory[m.category] = (byCategory[m.category] || 0) + 1;
-                totalMetrics++;
-            }
-        }
-        const report = {
-            files: results,
-            summary: {
-                totalFiles: results.length,
-                totalMetrics,
-                byCategory,
-            },
-        };
-        // Output
-        if (args.format === 'json') {
-            const output = JSON.stringify(report, null, 2);
-            if (args.output) {
-                fs.writeFileSync(args.output, output);
-                if (!args.quiet)
-                    console.error(`Output written to ${args.output}`);
-            }
-            else {
-                console.log(output);
-            }
-        }
-        else {
-            const output = formatMetricsText(report, { top: args.top ?? undefined });
-            if (args.output) {
-                fs.writeFileSync(args.output, output);
-                if (!args.quiet)
-                    console.error(`Output written to ${args.output}`);
-            }
-            else {
-                console.log(output);
-            }
-        }
-        return 0;
-    }
-    catch (error) {
-        console.error('Error:', error instanceof Error ? error.message : error);
-        return 1;
-    }
-}
-function formatMetricsText(report, opts = {}) {
-    const top = opts.top ?? Number.POSITIVE_INFINITY;
-    const lines = [];
-    lines.push('═'.repeat(70));
-    lines.push('SOFTWARE METRICS REPORT');
-    lines.push('═'.repeat(70));
-    lines.push('');
-    lines.push(`Files analyzed: ${report.summary.totalFiles}`);
-    lines.push(`Total metrics:  ${report.summary.totalMetrics}`);
-    lines.push('');
-    // Category breakdown
-    lines.push('─'.repeat(40));
-    lines.push('METRICS BY CATEGORY');
-    lines.push('─'.repeat(40));
-    for (const [cat, count] of Object.entries(report.summary.byCategory).sort()) {
-        lines.push(`  ${cat}: ${count}`);
-    }
-    lines.push('');
-    // Composite scores across all files
-    const compositeNames = ['maintainability_index', 'code_quality_index', 'bug_hotspot_score', 'refactoring_roi'];
-    const composites = {};
-    for (const name of compositeNames)
-        composites[name] = [];
-    for (const file of report.files) {
-        for (const m of file.metrics) {
-            if (compositeNames.includes(m.name)) {
-                composites[m.name].push(m.value);
-            }
-        }
-    }
-    const hasComposites = Object.values(composites).some(arr => arr.length > 0);
-    if (hasComposites) {
-        lines.push('─'.repeat(40));
-        lines.push('COMPOSITE SCORES (avg across files)');
-        lines.push('─'.repeat(40));
-        for (const [name, values] of Object.entries(composites)) {
-            if (values.length === 0)
-                continue;
-            const avg = values.reduce((a, b) => a + b, 0) / values.length;
-            const label = name.replace(/_/g, ' ').replace(/\b\w/g, c => c.toUpperCase());
-            lines.push(`  ${label}: ${avg.toFixed(1)}`);
-        }
-        lines.push('');
-    }
-    // CK suite per-file (sorted by total CK weight, truncated by --top)
-    const ckNames = ['CBO', 'RFC', 'LCOM', 'DIT', 'NOC', 'WMC'];
-    const filesWithCk = report.files
-        .map(file => {
-        const ckMetrics = file.metrics.filter(m => ckNames.includes(m.name) || ckNames.includes(m.name.split('_')[0]));
-        const weight = ckMetrics.reduce((s, m) => s + (typeof m.value === 'number' ? m.value : 0), 0);
-        return { file, ckMetrics, weight };
-    })
-        .filter(x => x.ckMetrics.length > 0)
-        .sort((a, b) => b.weight - a.weight);
-    if (filesWithCk.length > 0) {
-        lines.push('─'.repeat(40));
-        lines.push(top < filesWithCk.length ? `CK SUITE (top ${top} of ${filesWithCk.length} files by total weight)` : 'CK SUITE (per file)');
-        lines.push('─'.repeat(40));
-        for (const { file, ckMetrics } of filesWithCk.slice(0, top)) {
-            lines.push(`  ${file.file}:`);
-            for (const m of ckMetrics) {
-                lines.push(`    ${m.name}: ${typeof m.value === 'number' ? m.value.toFixed(2) : m.value}`);
-            }
-        }
-        if (filesWithCk.length > top) {
-            lines.push(`  ... and ${filesWithCk.length - top} more (use --top <n> to adjust)`);
-        }
-        lines.push('');
-    }
-    // Top bug hotspots
-    const hotspots = [];
-    for (const file of report.files) {
-        const hs = file.metrics.find(m => m.name === 'bug_hotspot_score');
-        if (hs)
-            hotspots.push({ file: file.file, score: hs.value });
-    }
-    hotspots.sort((a, b) => b.score - a.score);
-    if (hotspots.length > 0) {
-        const hotspotLimit = Math.min(top, 10);
-        lines.push('─'.repeat(40));
-        lines.push(`TOP BUG HOTSPOTS (${Math.min(hotspotLimit, hotspots.length)} of ${hotspots.length})`);
-        lines.push('─'.repeat(40));
-        for (const h of hotspots.slice(0, hotspotLimit)) {
-            lines.push(`  ${h.file}: ${h.score.toFixed(1)}`);
-        }
-        lines.push('');
-    }
-    lines.push('═'.repeat(70));
-    return lines.join('\n');
-}
-//# sourceMappingURL=metrics.js.map

package/dist/cli/commands/metrics.js.map

@@ -1 +0,0 @@
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package/dist/cli/commands/project.d.ts

@@ -1,21 +0,0 @@
-/**
- * Project-level analysis command
- */
-import { type ProjectAnalysis, type TwoPhaseProjectAnalysis } from '../../project/index.js';
-export interface ProjectOptions {
-    directory: string;
-    include?: string[];
-    exclude?: string[];
-    quiet?: boolean;
-    discoverPatterns?: boolean;
-    patternThreshold?: number;
-    twoPhase?: boolean;
-    maxConcurrency?: number;
-    llmBaseUrl?: string;
-    llmApiKey?: string;
-}
-/**
- * Run project-level analysis.
- */
-export declare function runProjectAnalysis(options: ProjectOptions): Promise<ProjectAnalysis | TwoPhaseProjectAnalysis>;
-//# sourceMappingURL=project.d.ts.map

package/dist/cli/commands/project.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"project.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/project.ts"],"names":[],"mappings":"AAAA;;GAEG;AAIH,OAAO,EAGL,KAAK,eAAe,EACpB,KAAK,uBAAuB,EAC7B,MAAM,wBAAwB,CAAC;AAEhC,MAAM,WAAW,cAAc;IAC7B,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAC3B,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAiDD;;GAEG;AACH,wBAAsB,kBAAkB,CACtC,OAAO,EAAE,cAAc,GACtB,OAAO,CAAC,eAAe,GAAG,uBAAuB,CAAC,CAuDpD"}

package/dist/cli/commands/project.js

@@ -1,92 +0,0 @@
-/**
- * Project-level analysis command
- */
-import * as fs from 'fs';
-import * as path from 'path';
-import { analyzeProject, analyzeProjectTwoPhase, } from '../../project/index.js';
-/**
- * Find all source files in a directory.
- */
-function findSourceFiles(dir, include = ['**/*.java'], exclude = ['**/test/**', '**/node_modules/**']) {
-    const files = [];
-    function walk(currentDir) {
-        const entries = fs.readdirSync(currentDir, { withFileTypes: true });
-        for (const entry of entries) {
-            const fullPath = path.join(currentDir, entry.name);
-            const relativePath = path.relative(dir, fullPath);
-            // Check exclusions
-            const isExcluded = exclude.some(pattern => {
-                if (pattern.includes('**')) {
-                    const regex = new RegExp(pattern.replace(/\*\*/g, '.*').replace(/\*/g, '[^/]*'));
-                    return regex.test(relativePath);
-                }
-                return relativePath.includes(pattern.replace(/\*/g, ''));
-            });
-            if (isExcluded)
-                continue;
-            if (entry.isDirectory()) {
-                walk(fullPath);
-            }
-            else if (entry.isFile()) {
-                // Check if file matches include patterns
-                const ext = path.extname(entry.name).toLowerCase();
-                const isIncluded = ['.java', '.c', '.h', '.cpp', '.cc', '.cxx', '.hpp'].includes(ext);
-                if (isIncluded) {
-                    const content = fs.readFileSync(fullPath, 'utf-8');
-                    files.push({ path: fullPath, content });
-                }
-            }
-        }
-    }
-    walk(dir);
-    return files;
-}
-/**
- * Run project-level analysis.
- */
-export async function runProjectAnalysis(options) {
-    const files = findSourceFiles(options.directory, options.include, options.exclude);
-    if (!options.quiet) {
-        console.error(`Found ${files.length} source files`);
-    }
-    // Detect language from first file
-    const firstFile = files[0];
-    let language = 'java';
-    if (firstFile) {
-        const ext = path.extname(firstFile.path).toLowerCase();
-        if (ext === '.c' || ext === '.h') {
-            language = 'c';
-        }
-        else if (['.cpp', '.cc', '.cxx', '.hpp'].includes(ext)) {
-            language = 'cpp';
-        }
-    }
-    // Use two-phase analyzer if enabled
-    if (options.twoPhase) {
-        if (!options.quiet) {
-            console.error('Running two-phase LLM-enhanced analysis...');
-        }
-        let filesProcessed = 0;
-        const result = await analyzeProjectTwoPhase(files, {
-            language,
-            enableEnrichment: true,
-            parallelPhase1: true,
-            maxConcurrency: options.maxConcurrency || 10,
-            enablePhase2: true,
-            onFileComplete: options.quiet
-                ? undefined
-                : (_file, i, total) => {
-                    filesProcessed = i;
-                    process.stderr.write(`\rPhase 1: ${i}/${total} files...`);
-                },
-        });
-        if (!options.quiet) {
-            console.error(''); // New line after progress
-            console.error(`Phase 2 complete. Found ${result.crossFileFlows.length} cross-file flows.`);
-        }
-        return result;
-    }
-    const result = await analyzeProject(files, { language });
-    return result;
-}
-//# sourceMappingURL=project.js.map

package/dist/cli/commands/project.js.map

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package/dist/cli/commands/quality.d.ts

@@ -1,15 +0,0 @@
-/**
- * Quality Score Command
- *
- * Calculates a quality score for a codebase using 5 quality passes:
- * code-complexity, test-coverage, documentation-coverage,
- * maintainability-index, and performance-patterns.
- *
- * Usage:
- *   cognium-ai quality <path>
- *   cognium-ai quality <path> --format json
- *   cognium-ai quality <path> --format markdown -o quality-badge.svg
- */
-import type { CliArgs } from '../args.js';
-export declare function executeQuality(args: CliArgs): Promise<number>;
-//# sourceMappingURL=quality.d.ts.map

package/dist/cli/commands/quality.d.ts.map

@@ -1 +0,0 @@
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