circle-ir-ai 2.7.0 → 2.7.2

package/dist/cli/commands/analyze.js

@@ -1,303 +0,0 @@
-/**
- * Analyze command — single-file, directory swarm, or multi-agent bundle.
- *
- * Also exports the lower-level runAnalysis() helper used by other code.
- */
-import * as fs from 'fs';
-import * as path from 'path';
-import { analyze } from 'circle-ir';
-import { ensureAnalyzerInitialized } from '../../utils/analyzer-init.js';
-import { loadCogniumConfig, convertCogniumConfigToPassOptions } from '../config.js';
-import { analyzeFile } from '../../agents/mastra/workflow.js';
-import { runBundle, runBundleOnFiles, registerSecurityAgents, } from '../../agents/multi/index.js';
-import { runSwarmAnalysis } from './swarm.js';
-import { formatOutput } from '../formatters/index.js';
-export async function runAnalysis(filePath, options = {}) {
-    await ensureAnalyzerInitialized();
-    const code = fs.readFileSync(filePath, 'utf-8');
-    const ext = path.extname(filePath).toLowerCase();
-    let language = 'java';
-    if (ext === '.c' || ext === '.h')
-        language = 'c';
-    else if (['.cpp', '.cc', '.cxx', '.hpp'].includes(ext))
-        language = 'cpp';
-    return analyze(code, filePath, language, { taintConfig: options.taintConfig });
-}
-// ---------------------------------------------------------------------------
-// executeAnalyze — CLI entry for `cognium-ai <path>` (no subcommand)
-// ---------------------------------------------------------------------------
-function detectLanguageFromFile(filePath) {
-    const ext = path.extname(filePath).toLowerCase();
-    switch (ext) {
-        case '.java': return 'java';
-        case '.js':
-        case '.jsx':
-        case '.mjs':
-        case '.cjs': return 'javascript';
-        case '.ts':
-        case '.tsx':
-        case '.mts':
-        case '.cts': return 'typescript';
-        case '.py': return 'python';
-        case '.rs': return 'rust';
-        case '.c':
-        case '.h': return 'c';
-        case '.cpp':
-        case '.cc':
-        case '.cxx':
-        case '.hpp':
-        case '.hxx': return 'cpp';
-        default: return 'java';
-    }
-}
-function collectJavaFiles(dir, include, exclude) {
-    const files = [];
-    const walk = (d) => {
-        for (const entry of fs.readdirSync(d, { withFileTypes: true })) {
-            const fullPath = path.join(d, entry.name);
-            if (entry.isDirectory()) {
-                const relPath = path.relative(dir, fullPath);
-                if (exclude.some(p => relPath.includes(p) || entry.name === p))
-                    continue;
-                walk(fullPath);
-            }
-            else if (entry.name.endsWith('.java')) {
-                const relPath = path.relative(dir, fullPath);
-                if (include.length > 0 && !include.some(p => relPath.includes(p) || entry.name.includes(p)))
-                    continue;
-                if (exclude.some(p => relPath.includes(p) || entry.name === p))
-                    continue;
-                files.push(fullPath);
-            }
-        }
-    };
-    walk(dir);
-    return files;
-}
-function getSeverityIcon(severity) {
-    switch (severity) {
-        case 'CRITICAL': return '🔴';
-        case 'HIGH': return '🟠';
-        case 'MEDIUM': return '🟡';
-        case 'LOW': return '🟢';
-        default: return 'ℹ️';
-    }
-}
-function formatBundleResult(result) {
-    const lines = [];
-    lines.push('═══════════════════════════════════════════════════════════════');
-    lines.push('                    MULTI-AGENT ANALYSIS RESULTS');
-    lines.push('═══════════════════════════════════════════════════════════════');
-    lines.push('');
-    lines.push(`Files analyzed: ${result.summary.totalFiles}`);
-    lines.push(`Total findings: ${result.summary.totalFindings}`);
-    lines.push(`Total time: ${(result.totalTimeMs / 1000).toFixed(2)}s`);
-    lines.push('');
-    lines.push('Findings by category:');
-    for (const [cat, count] of Object.entries(result.summary.byCategory)) {
-        if (count > 0)
-            lines.push(`  ${cat}: ${count}`);
-    }
-    lines.push('');
-    const filesWithFindings = result.results.filter(r => r.summary.totalFindings > 0);
-    if (filesWithFindings.length > 0) {
-        lines.push('───────────────────────────────────────────────────────────────');
-        lines.push('FILES WITH FINDINGS');
-        lines.push('───────────────────────────────────────────────────────────────');
-        for (const fileResult of filesWithFindings) {
-            lines.push('');
-            lines.push(`📁 ${fileResult.filePath}`);
-            for (const agentResult of fileResult.results) {
-                for (const f of agentResult.findings) {
-                    const sev = (f.severity ?? 'INFO').toUpperCase();
-                    const loc = f.location;
-                    const line = loc?.line ?? '?';
-                    const msg = f.message ?? f.type;
-                    const cwe = f.cwe ? ` [${f.cwe}]` : '';
-                    lines.push(`  ${getSeverityIcon(sev)} Line ${line}: ${msg}${cwe}`);
-                }
-            }
-        }
-    }
-    lines.push('');
-    lines.push('═══════════════════════════════════════════════════════════════');
-    return lines.join('\n');
-}
-export async function executeAnalyze(args) {
-    const targetPath = args.file || args.directory;
-    if (!targetPath) {
-        console.error('Error: No file or directory specified');
-        console.error('Usage: cognium-ai <file|directory> [options]');
-        return 1;
-    }
-    if (!fs.existsSync(targetPath)) {
-        console.error(`Error: Path not found: ${targetPath}`);
-        return 1;
-    }
-    const isDirectory = fs.statSync(targetPath).isDirectory();
-    // Merge cognium.config.json into pass-disable list
-    const cogniumConfig = loadCogniumConfig(args.config || undefined, targetPath);
-    let configDisabledPasses = [];
-    if (cogniumConfig) {
-        const { disabledPasses } = convertCogniumConfigToPassOptions(cogniumConfig);
-        configDisabledPasses = disabledPasses;
-    }
-    const mergedDisabledPasses = [...new Set([...configDisabledPasses, ...args.disablePass])];
-    // Effective include/exclude (CLI overrides config)
-    const include = args.include.length > 0 ? args.include : (cogniumConfig?.include ?? []);
-    const exclude = args.exclude.length > 0 ? args.exclude : (cogniumConfig?.exclude ?? []);
-    try {
-        if (args.bundle) {
-            registerSecurityAgents();
-            if (isDirectory) {
-                const files = collectJavaFiles(targetPath, include, exclude);
-                const fileInputs = files.map(f => ({
-                    path: f,
-                    content: fs.readFileSync(f, 'utf-8'),
-                    language: 'java',
-                }));
-                if (!args.quiet) {
-                    console.error(`Running ${args.bundle} bundle on ${fileInputs.length} files...`);
-                }
-                const bundleResult = await runBundleOnFiles(args.bundle, fileInputs, {
-                    maxConcurrency: args.threads,
-                    onFileComplete: args.quiet ? undefined : (file, i, total) => {
-                        console.error(`[${i}/${total}] ${path.basename(file)}`);
-                    },
-                });
-                const output = args.format === 'json'
-                    ? JSON.stringify(bundleResult, null, 2)
-                    : formatBundleResult(bundleResult);
-                if (args.output) {
-                    fs.writeFileSync(args.output, output);
-                    if (!args.quiet)
-                        console.error(`Output written to ${args.output}`);
-                }
-                else {
-                    console.log(output);
-                }
-                if (args.exitCode && bundleResult.summary.totalFindings > 0)
-                    return 1;
-            }
-            else {
-                const sourceCode = fs.readFileSync(targetPath, 'utf-8');
-                const detectedLang = detectLanguageFromFile(targetPath);
-                const bundleLang = (['java', 'c', 'cpp'].includes(detectedLang) ? detectedLang : 'java');
-                const bundleResult = await runBundle(args.bundle, sourceCode, targetPath, {
-                    language: bundleLang,
-                });
-                const output = args.format === 'json'
-                    ? JSON.stringify(bundleResult, null, 2)
-                    : formatBundleResult({
-                        results: [bundleResult],
-                        totalTimeMs: bundleResult.totalTimeMs,
-                        summary: { totalFiles: 1, ...bundleResult.summary },
-                    });
-                if (args.output) {
-                    fs.writeFileSync(args.output, output);
-                    if (!args.quiet)
-                        console.error(`Output written to ${args.output}`);
-                }
-                else {
-                    console.log(output);
-                }
-                if (args.exitCode && bundleResult.summary.totalFindings > 0)
-                    return 1;
-            }
-            return 0;
-        }
-        if (isDirectory) {
-            const result = await runSwarmAnalysis({
-                directory: targetPath,
-                include,
-                exclude,
-                quiet: args.quiet,
-                maxConcurrency: args.threads,
-                enableEnrichment: args.llmEnrich,
-                enableVerification: args.llmVerify,
-                cacheEnabled: args.cache,
-                cacheDir: args.cacheDir ?? undefined,
-                clearCache: args.clearCache,
-                streamOutput: args.streamOutput ?? undefined,
-                memoryEfficient: args.memoryEfficient,
-                disabledPasses: mergedDisabledPasses.length > 0 ? mergedDisabledPasses : undefined,
-            });
-            if (args.output) {
-                fs.writeFileSync(args.output, JSON.stringify(result, null, 2));
-                if (!args.quiet)
-                    console.error(`Output written to ${args.output}`);
-            }
-            else if (args.format === 'json') {
-                console.log(JSON.stringify(result, null, 2));
-            }
-            if (args.exitCode && result.summary.totalVulnerabilities > 0)
-                return 1;
-            return 0;
-        }
-        // Single-file path
-        const sourceCode = fs.readFileSync(targetPath, 'utf-8');
-        const detectedLang = detectLanguageFromFile(targetPath);
-        const mastraResult = await analyzeFile(targetPath, sourceCode, {
-            language: detectedLang,
-            enableEnrichment: args.llmEnrich,
-            enableVerification: args.llmVerify,
-            disabledPasses: mergedDisabledPasses.length > 0 ? mergedDisabledPasses : undefined,
-        });
-        const result = {
-            meta: {
-                file_path: targetPath,
-                language: detectedLang,
-                loc: sourceCode.split('\n').length,
-                parse_time_ms: 0,
-                analysis_time_ms: mastraResult.stats.totalTimeMs || 0,
-            },
-            types: [],
-            imports: [],
-            exports: [],
-            calls: [],
-            cfg: { blocks: [], edges: [] },
-            dfg: { definitions: [], uses: [] },
-            taint: {
-                sources: mastraResult.vulnerabilities.map((v) => {
-                    const src = v.source;
-                    return {
-                        line: src?.line ?? 0,
-                        type: src?.type ?? 'unknown',
-                        location: `Line ${src?.line ?? 0}`,
-                        severity: v.severity ?? 'medium',
-                    };
-                }),
-                sinks: mastraResult.vulnerabilities.map((v) => {
-                    const sink = v.sink;
-                    return {
-                        line: sink?.line ?? 0,
-                        type: sink?.type ?? 'unknown',
-                        cwe: v.cwe ?? 'CWE-Unknown',
-                        location: `Line ${sink?.line ?? 0}`,
-                    };
-                }),
-                sanitizers: [],
-                flows: [],
-            },
-            unresolved: [],
-            enriched: { llm_sources: [], llm_sinks: [], llm_verified: [] },
-        };
-        const output = formatOutput(result, args.format, targetPath);
-        if (args.output) {
-            fs.writeFileSync(args.output, output);
-            if (!args.quiet)
-                console.error(`Output written to ${args.output}`);
-        }
-        else {
-            console.log(output);
-        }
-        if (args.exitCode && result.taint.sinks.length > 0)
-            return 1;
-        return 0;
-    }
-    catch (error) {
-        console.error('Error:', error instanceof Error ? error.message : error);
-        return 1;
-    }
-}
-//# sourceMappingURL=analyze.js.map

package/dist/cli/commands/analyze.js.map

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package/dist/cli/commands/benchmark-runner.d.ts

@@ -1,42 +0,0 @@
-/**
- * Re-export benchmark runner for use in CLI.
- *
- * The benchmark runner lives in benchmarks/lib/ (outside src/),
- * so we use a dynamic import to avoid rootDir violations at compile time.
- */
-export interface BenchmarkRunnerOptions {
-    benchmarkDir: string;
-    expectedResultsPath: string;
-    categories?: string[];
-    limit?: number;
-    verbose?: boolean;
-    parallelism?: number;
-    llmEnrich?: boolean;
-    llmVerify?: boolean;
-    llmBaseUrl?: string;
-    llmApiKey?: string;
-}
-export interface CategoryMetrics {
-    category: string;
-    truePositives: number;
-    falsePositives: number;
-    falseNegatives: number;
-    trueNegatives: number;
-}
-export interface BenchmarkReport {
-    categoryMetrics: CategoryMetrics[];
-    overallMetrics: {
-        truePositives: number;
-        falsePositives: number;
-        falseNegatives: number;
-        trueNegatives: number;
-    };
-}
-/**
- * Dynamically import and run the benchmark runner.
- * This avoids rootDir issues since the import happens at runtime.
- */
-export declare function loadBenchmarkRunner(): Promise<{
-    runBenchmark: (options: BenchmarkRunnerOptions) => Promise<BenchmarkReport>;
-}>;
-//# sourceMappingURL=benchmark-runner.d.ts.map

package/dist/cli/commands/benchmark-runner.d.ts.map

@@ -1 +0,0 @@
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package/dist/cli/commands/benchmark-runner.js

@@ -1,18 +0,0 @@
-/**
- * Re-export benchmark runner for use in CLI.
- *
- * The benchmark runner lives in benchmarks/lib/ (outside src/),
- * so we use a dynamic import to avoid rootDir violations at compile time.
- */
-/**
- * Dynamically import and run the benchmark runner.
- * This avoids rootDir issues since the import happens at runtime.
- */
-export async function loadBenchmarkRunner() {
-    // Use dynamic import to load from benchmarks directory at runtime
-    // The path is constructed to avoid static analysis by tsc
-    const benchmarkPath = ['..', '..', '..', 'benchmarks', 'lib', 'runner.js'].join('/');
-    const runner = await import(/* @vite-ignore */ benchmarkPath);
-    return { runBenchmark: runner.runBenchmark };
-}
-//# sourceMappingURL=benchmark-runner.js.map

package/dist/cli/commands/benchmark-runner.js.map

@@ -1 +0,0 @@
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package/dist/cli/commands/benchmark.d.ts

@@ -1,11 +0,0 @@
-/**
- * Benchmark command
- *
- * Runs OWASP Benchmark tests against Circle-IR.
- */
-import type { CliArgs } from '../args.js';
-/**
- * Execute OWASP Benchmark tests.
- */
-export declare function executeBenchmark(args: CliArgs): Promise<number>;
-//# sourceMappingURL=benchmark.d.ts.map

package/dist/cli/commands/benchmark.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"benchmark.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/benchmark.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AAG1C;;GAEG;AACH,wBAAsB,gBAAgB,CAAC,IAAI,EAAE,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,CA4FrE"}

package/dist/cli/commands/benchmark.js

@@ -1,90 +0,0 @@
-/**
- * Benchmark command
- *
- * Runs OWASP Benchmark tests against Circle-IR.
- */
-import * as fs from 'fs';
-import { loadBenchmarkRunner } from './benchmark-runner.js';
-/**
- * Execute OWASP Benchmark tests.
- */
-export async function executeBenchmark(args) {
-    const testDir = args.directory;
-    const expectedFile = args.expectedResults;
-    if (!testDir) {
-        console.error('Error: No test directory specified');
-        console.error('Usage: cognium-ai benchmark <directory> --expected <file>');
-        return 1;
-    }
-    if (!fs.existsSync(testDir)) {
-        console.error(`Error: Directory not found: ${testDir}`);
-        return 1;
-    }
-    if (!expectedFile) {
-        console.error('Error: No expected results file specified');
-        console.error('Usage: cognium-ai benchmark <directory> --expected <file>');
-        return 1;
-    }
-    if (!fs.existsSync(expectedFile)) {
-        console.error(`Error: Expected results file not found: ${expectedFile}`);
-        return 1;
-    }
-    // Dynamically load the benchmark runner (lives outside src/)
-    const { runBenchmark } = await loadBenchmarkRunner();
-    // Run benchmark using the existing runner
-    const report = await runBenchmark({
-        benchmarkDir: testDir,
-        expectedResultsPath: expectedFile,
-        categories: args.categories.length > 0 ? args.categories : undefined,
-        limit: args.limit || undefined,
-        verbose: !args.quiet,
-        parallelism: args.parallel || 1,
-        llmEnrich: args.llmEnrich,
-        llmVerify: args.llmVerify,
-        llmBaseUrl: args.llmBaseUrl || undefined,
-        llmApiKey: args.llmApiKey || undefined,
-    });
-    // Output results
-    if (args.format === 'json') {
-        console.log(JSON.stringify(report, null, 2));
-    }
-    else {
-        // Summary format
-        console.log();
-        console.log('Results by Category');
-        console.log('-'.repeat(70));
-        console.log('Category'.padEnd(20) + 'Total'.padEnd(8) + 'TP'.padEnd(8) + 'FP'.padEnd(8) + 'FN'.padEnd(8) + 'Score');
-        console.log('-'.repeat(70));
-        for (const metrics of report.categoryMetrics) {
-            const total = metrics.truePositives + metrics.falseNegatives;
-            const score = total > 0 ? ((metrics.truePositives / total) * 100).toFixed(1) : 'N/A';
-            console.log(metrics.category.padEnd(20) +
-                total.toString().padEnd(8) +
-                metrics.truePositives.toString().padEnd(8) +
-                metrics.falsePositives.toString().padEnd(8) +
-                metrics.falseNegatives.toString().padEnd(8) +
-                score + '%');
-        }
-        console.log('-'.repeat(70));
-        const om = report.overallMetrics;
-        const totalTests = om.truePositives + om.falseNegatives;
-        const overallScore = totalTests > 0
-            ? ((om.truePositives / totalTests) * 100).toFixed(1)
-            : 'N/A';
-        console.log('TOTAL'.padEnd(20) +
-            totalTests.toString().padEnd(8) +
-            om.truePositives.toString().padEnd(8) +
-            om.falsePositives.toString().padEnd(8) +
-            om.falseNegatives.toString().padEnd(8) +
-            overallScore + '%');
-        console.log();
-        console.log(`OWASP Benchmark Score: ${overallScore}%`);
-    }
-    // Write output file if specified
-    if (args.output) {
-        fs.writeFileSync(args.output, JSON.stringify(report, null, 2));
-        console.log(`Report written to ${args.output}`);
-    }
-    return 0;
-}
-//# sourceMappingURL=benchmark.js.map

package/dist/cli/commands/benchmark.js.map

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package/dist/cli/commands/cluster.d.ts

@@ -1,12 +0,0 @@
-/**
- * Cluster Command
- *
- * Wires existing src/components/ analyzeComponents() to CLI.
- * Performs two-phase component enrichment and clustering.
- *
- * Usage:
- *   cognium-ai cluster <path> [--format json] [--llm]
- */
-import type { CliArgs } from '../args.js';
-export declare function executeCluster(args: CliArgs): Promise<number>;
-//# sourceMappingURL=cluster.d.ts.map

package/dist/cli/commands/cluster.d.ts.map

@@ -1 +0,0 @@
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