circle-ir-ai 2.7.0 → 2.7.2

package/dist/cli/effective-options.d.ts

@@ -1,42 +0,0 @@
-/**
- * Effective options helper — merges CLI args with cognium.config.json and
- * .circle-ir.yaml into the values commands actually use.
- *
- * Resolution order (later wins):
- *   1. defaults
- *   2. .circle-ir.yaml (legacy taint config)
- *   3. cognium.config.json (preferred — passes, suppressions, include/exclude)
- *   4. CLI flags
- */
-import type { AnalyzerOptions } from 'circle-ir';
-import type { CliArgs } from './args.js';
-import { type CogniumConfig, type ResolvedConfig } from './config.js';
-export interface EffectiveOptions {
-    /** Glob patterns to include. */
-    include: string[];
-    /** Glob patterns to exclude. */
-    exclude: string[];
-    /** Pass names disabled (CLI ∪ cognium.config.passes ∪ trust.disabledPasses). */
-    disabledPasses: string[];
-    /** Severity threshold (CLI > config > undefined). */
-    severity: 'critical' | 'high' | 'medium' | 'low' | undefined;
-    /** Categories filter (CLI > config > []). */
-    categories: string[];
-    /** Trust-specific disabled passes (subset of disabledPasses, source-tracked). */
-    trustDisabledPasses: string[];
-    /** AnalyzerOptions for circle-ir analyze() — passOptions + disabledPasses. */
-    analyzerOptions: AnalyzerOptions | undefined;
-    /** The loaded cognium.config.json (or null). */
-    cognium: CogniumConfig | null;
-    /** The resolved .circle-ir.yaml config (always present, with defaults). */
-    circleIr: ResolvedConfig;
-}
-/**
- * Build the effective options for a command.
- *
- * @param args   parsed CliArgs
- * @param target the path the command was invoked on (used as starting dir for
- *               config search if --config wasn't given)
- */
-export declare function getEffectiveOptions(args: CliArgs, target: string): EffectiveOptions;
-//# sourceMappingURL=effective-options.d.ts.map

package/dist/cli/effective-options.d.ts.map

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package/dist/cli/effective-options.js

@@ -1,80 +0,0 @@
-/**
- * Effective options helper — merges CLI args with cognium.config.json and
- * .circle-ir.yaml into the values commands actually use.
- *
- * Resolution order (later wins):
- *   1. defaults
- *   2. .circle-ir.yaml (legacy taint config)
- *   3. cognium.config.json (preferred — passes, suppressions, include/exclude)
- *   4. CLI flags
- */
-import * as fs from 'fs';
-import * as path from 'path';
-import { loadCogniumConfig, loadConfig, convertCogniumConfigToPassOptions, } from './config.js';
-/**
- * Build the effective options for a command.
- *
- * @param args   parsed CliArgs
- * @param target the path the command was invoked on (used as starting dir for
- *               config search if --config wasn't given)
- */
-export function getEffectiveOptions(args, target) {
-    // Where to start searching for config files
-    const startDir = (() => {
-        try {
-            return fs.statSync(target).isDirectory() ? target : path.dirname(target);
-        }
-        catch {
-            return process.cwd();
-        }
-    })();
-    const cognium = loadCogniumConfig(args.config || undefined, startDir);
-    const circleIr = loadConfig(args.config || null, startDir);
-    // Include / exclude — CLI overrides config
-    const include = args.include.length > 0
-        ? args.include
-        : (cognium?.include?.length ? cognium.include : circleIr.include);
-    const exclude = args.exclude.length > 0
-        ? args.exclude
-        : (cognium?.exclude?.length ? cognium.exclude : circleIr.exclude);
-    // Disabled passes — union of CLI + cognium.passes (false) + cognium.trust.disabledPasses
-    const cogniumPasses = cognium ? convertCogniumConfigToPassOptions(cognium) : { passOptions: {}, disabledPasses: [] };
-    const trustDisabled = cognium?.trust?.disabledPasses ?? [];
-    const disabledPasses = [...new Set([
-            ...args.disablePass,
-            ...cogniumPasses.disabledPasses,
-            ...trustDisabled,
-        ])];
-    // Severity
-    const cliSeverity = args.severity ?? undefined;
-    const configSeverityRaw = cognium?.severity ?? circleIr.analysis.severity_threshold;
-    const configSeverity = configSeverityRaw === 'critical' || configSeverityRaw === 'high' ||
-        configSeverityRaw === 'medium' || configSeverityRaw === 'low'
-        ? configSeverityRaw
-        : undefined;
-    const severity = cliSeverity ?? configSeverity;
-    // Categories
-    const categories = args.categories.length > 0
-        ? args.categories
-        : (cognium?.categories ?? []);
-    // AnalyzerOptions
-    const hasPassOptions = Object.keys(cogniumPasses.passOptions).length > 0;
-    const analyzerOptions = hasPassOptions || disabledPasses.length > 0
-        ? {
-            passOptions: hasPassOptions ? cogniumPasses.passOptions : undefined,
-            disabledPasses: disabledPasses.length > 0 ? disabledPasses : undefined,
-        }
-        : undefined;
-    return {
-        include,
-        exclude,
-        disabledPasses,
-        severity,
-        categories,
-        trustDisabledPasses: [...new Set([...args.disablePass, ...trustDisabled])],
-        analyzerOptions,
-        cognium,
-        circleIr,
-    };
-}
-//# sourceMappingURL=effective-options.js.map

package/dist/cli/effective-options.js.map

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package/dist/cli/file-collection.d.ts

@@ -1,49 +0,0 @@
-/**
- * Shared file collector — used by every command that walks a directory.
- *
- * Honors:
- *   - include / exclude glob patterns (minimatch)
- *   - per-language ext filters
- *   - hard skip dirs (node_modules, .git, target, etc.)
- *   - maxFiles / depth caps
- *
- * Glob matching is performed against the path *relative to the root* with
- * forward slashes, so patterns like `**\/test\/**` work cross-platform.
- */
-export type SupportedLanguage = 'java' | 'javascript' | 'typescript' | 'python' | 'rust' | 'c' | 'cpp' | 'bash' | 'html';
-export interface CollectOptions {
-    /** Glob patterns to include (relative to root). Empty = include all matching extensions. */
-    include?: string[];
-    /** Glob patterns to exclude (relative to root). */
-    exclude?: string[];
-    /** Restrict to a subset of languages. Default: all supported. */
-    languages?: SupportedLanguage[];
-    /** Maximum number of files to return. Default: 10_000. */
-    maxFiles?: number;
-    /** Maximum walk depth. Default: 30. */
-    maxDepth?: number;
-    /** Additional directory names to never descend into (merged with defaults). */
-    extraSkipDirs?: string[];
-    /** Skip dotfiles/dotdirs. Default: true. */
-    skipDotted?: boolean;
-}
-export interface CollectedFile {
-    /** Absolute path. */
-    path: string;
-    /** Path relative to the root supplied to collectFiles(). */
-    relativePath: string;
-    /** Detected language. */
-    language: SupportedLanguage;
-}
-/**
- * Collect source files under `root`, respecting include/exclude/lang filters.
- *
- * If `root` is a single file, returns a one-element array (or empty if it
- * doesn't match the filters).
- */
-export declare function collectFiles(root: string, options?: CollectOptions): CollectedFile[];
-export declare const _internal: {
-    LANGUAGE_EXTENSIONS: Record<SupportedLanguage, readonly string[]>;
-    DEFAULT_SKIP_DIRS: Set<string>;
-};
-//# sourceMappingURL=file-collection.d.ts.map

package/dist/cli/file-collection.d.ts.map

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package/dist/cli/file-collection.js

@@ -1,142 +0,0 @@
-/**
- * Shared file collector — used by every command that walks a directory.
- *
- * Honors:
- *   - include / exclude glob patterns (minimatch)
- *   - per-language ext filters
- *   - hard skip dirs (node_modules, .git, target, etc.)
- *   - maxFiles / depth caps
- *
- * Glob matching is performed against the path *relative to the root* with
- * forward slashes, so patterns like `**\/test\/**` work cross-platform.
- */
-import * as fs from 'fs';
-import * as path from 'path';
-import { minimatch } from 'minimatch';
-const LANGUAGE_EXTENSIONS = {
-    java: ['.java'],
-    javascript: ['.js', '.jsx', '.mjs', '.cjs'],
-    typescript: ['.ts', '.tsx', '.mts', '.cts'],
-    python: ['.py'],
-    rust: ['.rs'],
-    c: ['.c', '.h'],
-    cpp: ['.cpp', '.cc', '.cxx', '.hpp', '.hh', '.hxx'],
-    bash: ['.sh', '.bash'],
-    html: ['.html', '.htm'],
-};
-const DEFAULT_SKIP_DIRS = new Set([
-    'node_modules',
-    '.git',
-    '.svn',
-    '.hg',
-    'dist',
-    'build',
-    'target',
-    'out',
-    'bin',
-    '.idea',
-    '.vscode',
-    '.next',
-    '.gradle',
-    '.m2',
-    'vendor',
-    'coverage',
-    '__pycache__',
-    '.tsbuildinfo',
-]);
-function detectLanguage(ext) {
-    for (const [lang, exts] of Object.entries(LANGUAGE_EXTENSIONS)) {
-        if (exts.includes(ext))
-            return lang;
-    }
-    return null;
-}
-function toForwardSlash(p) {
-    return p.split(path.sep).join('/');
-}
-function matchAny(relPath, patterns) {
-    if (patterns.length === 0)
-        return false;
-    const slashed = toForwardSlash(relPath);
-    return patterns.some(pat => minimatch(slashed, pat, { dot: true, matchBase: true }));
-}
-/**
- * Collect source files under `root`, respecting include/exclude/lang filters.
- *
- * If `root` is a single file, returns a one-element array (or empty if it
- * doesn't match the filters).
- */
-export function collectFiles(root, options = {}) {
-    const include = options.include ?? [];
-    const exclude = options.exclude ?? [];
-    const languages = options.languages ?? Object.keys(LANGUAGE_EXTENSIONS);
-    const maxFiles = options.maxFiles ?? 10_000;
-    const maxDepth = options.maxDepth ?? 30;
-    const skipDotted = options.skipDotted !== false;
-    const skipDirs = new Set([...DEFAULT_SKIP_DIRS, ...(options.extraSkipDirs ?? [])]);
-    const allowedExts = new Set();
-    for (const lang of languages) {
-        for (const ext of LANGUAGE_EXTENSIONS[lang])
-            allowedExts.add(ext);
-    }
-    const out = [];
-    let stat;
-    try {
-        stat = fs.statSync(root);
-    }
-    catch {
-        return out;
-    }
-    if (stat.isFile()) {
-        const ext = path.extname(root).toLowerCase();
-        const lang = detectLanguage(ext);
-        if (lang && languages.includes(lang)) {
-            out.push({ path: root, relativePath: path.basename(root), language: lang });
-        }
-        return out;
-    }
-    const rootResolved = path.resolve(root);
-    const walk = (dir, depth) => {
-        if (out.length >= maxFiles || depth > maxDepth)
-            return;
-        let entries;
-        try {
-            entries = fs.readdirSync(dir, { withFileTypes: true });
-        }
-        catch {
-            return;
-        }
-        for (const entry of entries) {
-            if (out.length >= maxFiles)
-                return;
-            const full = path.join(dir, entry.name);
-            const rel = path.relative(rootResolved, full);
-            if (entry.isDirectory()) {
-                if (skipDirs.has(entry.name))
-                    continue;
-                if (skipDotted && entry.name.startsWith('.'))
-                    continue;
-                if (matchAny(rel, exclude))
-                    continue;
-                walk(full, depth + 1);
-            }
-            else if (entry.isFile()) {
-                const ext = path.extname(entry.name).toLowerCase();
-                if (!allowedExts.has(ext))
-                    continue;
-                const lang = detectLanguage(ext);
-                if (!lang)
-                    continue;
-                if (matchAny(rel, exclude))
-                    continue;
-                if (include.length > 0 && !matchAny(rel, include))
-                    continue;
-                out.push({ path: full, relativePath: rel, language: lang });
-            }
-        }
-    };
-    walk(rootResolved, 0);
-    return out;
-}
-export const _internal = { LANGUAGE_EXTENSIONS, DEFAULT_SKIP_DIRS };
-//# sourceMappingURL=file-collection.js.map

package/dist/cli/file-collection.js.map

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package/dist/cli/formatters/index.d.ts

@@ -1,15 +0,0 @@
-/**
- * Output Formatters
- */
-import type { CircleIR, ProjectAnalysis } from 'circle-ir';
-import type { TwoPhaseProjectAnalysis } from '../../project/index.js';
-import type { OutputFormat } from '../args.js';
-/**
- * Format single-file analysis output based on requested format.
- */
-export declare function formatOutput(result: CircleIR, format: OutputFormat, filePath: string): string;
-/**
- * Format project analysis output based on requested format.
- */
-export declare function formatProjectOutput(result: ProjectAnalysis | TwoPhaseProjectAnalysis, format: OutputFormat): string;
-//# sourceMappingURL=index.d.ts.map

package/dist/cli/formatters/index.d.ts.map

@@ -1 +0,0 @@
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package/dist/cli/formatters/index.js

@@ -1,51 +0,0 @@
-/**
- * Output Formatters
- */
-import { formatJson } from './json.js';
-import { formatSummary } from './summary.js';
-import { formatSarif } from './sarif.js';
-import { formatProjectJson } from './project-json.js';
-import { formatProjectSummary } from './project-summary.js';
-import { formatProjectSarif } from './project-sarif.js';
-import { formatTwoPhaseProjectSummary } from './two-phase-summary.js';
-/**
- * Format single-file analysis output based on requested format.
- */
-export function formatOutput(result, format, filePath) {
-    switch (format) {
-        case 'json':
-            return formatJson(result);
-        case 'summary':
-            return formatSummary(result, filePath);
-        case 'sarif':
-            return formatSarif(result, filePath);
-        default:
-            return formatSummary(result, filePath);
-    }
-}
-/**
- * Check if result is a two-phase analysis result.
- */
-function isTwoPhaseResult(result) {
-    return 'enrichedFiles' in result && 'crossFileFlows' in result;
-}
-/**
- * Format project analysis output based on requested format.
- */
-export function formatProjectOutput(result, format) {
-    // Use two-phase formatter if applicable
-    if (isTwoPhaseResult(result) && format === 'summary') {
-        return formatTwoPhaseProjectSummary(result);
-    }
-    switch (format) {
-        case 'json':
-            return formatProjectJson(result);
-        case 'summary':
-            return formatProjectSummary(result);
-        case 'sarif':
-            return formatProjectSarif(result);
-        default:
-            return formatProjectSummary(result);
-    }
-}
-//# sourceMappingURL=index.js.map

package/dist/cli/formatters/index.js.map

@@ -1 +0,0 @@
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package/dist/cli/formatters/json.d.ts

@@ -1,11 +0,0 @@
-/**
- * JSON Formatter
- *
- * Outputs the full Circle-IR JSON.
- */
-import type { CircleIR } from 'circle-ir';
-/**
- * Format result as JSON.
- */
-export declare function formatJson(result: CircleIR): string;
-//# sourceMappingURL=json.d.ts.map

package/dist/cli/formatters/json.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"json.d.ts","sourceRoot":"","sources":["../../../src/cli/formatters/json.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AAE1C;;GAEG;AACH,wBAAgB,UAAU,CAAC,MAAM,EAAE,QAAQ,GAAG,MAAM,CAEnD"}

package/dist/cli/formatters/json.js

@@ -1,12 +0,0 @@
-/**
- * JSON Formatter
- *
- * Outputs the full Circle-IR JSON.
- */
-/**
- * Format result as JSON.
- */
-export function formatJson(result) {
-    return JSON.stringify(result, null, 2);
-}
-//# sourceMappingURL=json.js.map

package/dist/cli/formatters/json.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"json.js","sourceRoot":"","sources":["../../../src/cli/formatters/json.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAIH;;GAEG;AACH,MAAM,UAAU,UAAU,CAAC,MAAgB;IACzC,OAAO,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;AACzC,CAAC"}

package/dist/cli/formatters/project-json.d.ts

@@ -1,11 +0,0 @@
-/**
- * Project JSON Formatter
- *
- * Outputs the full project analysis as JSON.
- */
-import type { ProjectAnalysis } from 'circle-ir';
-/**
- * Format project result as JSON.
- */
-export declare function formatProjectJson(result: ProjectAnalysis): string;
-//# sourceMappingURL=project-json.d.ts.map

package/dist/cli/formatters/project-json.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"project-json.d.ts","sourceRoot":"","sources":["../../../src/cli/formatters/project-json.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,WAAW,CAAC;AAEjD;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,eAAe,GAAG,MAAM,CAEjE"}

package/dist/cli/formatters/project-json.js

@@ -1,12 +0,0 @@
-/**
- * Project JSON Formatter
- *
- * Outputs the full project analysis as JSON.
- */
-/**
- * Format project result as JSON.
- */
-export function formatProjectJson(result) {
-    return JSON.stringify(result, null, 2);
-}
-//# sourceMappingURL=project-json.js.map

package/dist/cli/formatters/project-json.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"project-json.js","sourceRoot":"","sources":["../../../src/cli/formatters/project-json.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAIH;;GAEG;AACH,MAAM,UAAU,iBAAiB,CAAC,MAAuB;IACvD,OAAO,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;AACzC,CAAC"}

package/dist/cli/formatters/project-sarif.d.ts

@@ -1,11 +0,0 @@
-/**
- * Project SARIF Formatter
- *
- * Outputs project analysis results in SARIF format.
- */
-import type { ProjectAnalysis } from 'circle-ir';
-/**
- * Format project result as SARIF.
- */
-export declare function formatProjectSarif(result: ProjectAnalysis): string;
-//# sourceMappingURL=project-sarif.d.ts.map

package/dist/cli/formatters/project-sarif.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"project-sarif.d.ts","sourceRoot":"","sources":["../../../src/cli/formatters/project-sarif.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,eAAe,EAAW,MAAM,WAAW,CAAC;AAa1D;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,eAAe,GAAG,MAAM,CAqBlE"}

package/dist/cli/formatters/project-sarif.js

@@ -1,127 +0,0 @@
-/**
- * Project SARIF Formatter
- *
- * Outputs project analysis results in SARIF format.
- */
-import { getRuleInfo, getSarifLevel, SARIF_SCHEMA, SARIF_VERSION, TOOL_INFO, } from './sarif-shared.js';
-/**
- * Format project result as SARIF.
- */
-export function formatProjectSarif(result) {
-    const rules = buildRules(result.findings);
-    const results = buildResults(result);
-    const sarif = {
-        $schema: SARIF_SCHEMA,
-        version: SARIF_VERSION,
-        runs: [
-            {
-                tool: {
-                    driver: {
-                        ...TOOL_INFO,
-                        rules,
-                    },
-                },
-                results,
-            },
-        ],
-    };
-    return JSON.stringify(sarif, null, 2);
-}
-/**
- * Build SARIF rules from findings.
- */
-function buildRules(findings) {
-    const ruleMap = new Map();
-    for (const finding of findings) {
-        if (!ruleMap.has(finding.cwe)) {
-            ruleMap.set(finding.cwe, buildRule(finding));
-        }
-    }
-    return Array.from(ruleMap.values());
-}
-/**
- * Build a SARIF rule from a finding.
- */
-function buildRule(finding) {
-    const ruleInfo = getRuleInfo(finding.type, finding.cwe);
-    return {
-        id: finding.cwe,
-        name: ruleInfo.name,
-        shortDescription: { text: ruleInfo.shortDescription },
-        fullDescription: { text: ruleInfo.fullDescription },
-        help: { text: finding.remediation },
-        properties: {
-            tags: ['security', finding.type],
-            security_severity: ruleInfo.severity,
-        },
-    };
-}
-/**
- * Build SARIF results from project analysis.
- */
-function buildResults(result) {
-    const sarifResults = [];
-    for (const finding of result.findings) {
-        const sarifResult = {
-            ruleId: finding.cwe,
-            level: getSarifLevel(finding.severity),
-            message: {
-                text: finding.explanation,
-            },
-            locations: [
-                {
-                    physicalLocation: {
-                        artifactLocation: {
-                            uri: finding.sink.file,
-                        },
-                        region: {
-                            startLine: finding.sink.line,
-                        },
-                    },
-                },
-            ],
-        };
-        // Add code flow if we have path information
-        if (finding.path && finding.path.length > 0) {
-            sarifResult.codeFlows = [
-                {
-                    threadFlows: [
-                        {
-                            locations: [
-                                // Source
-                                {
-                                    location: buildLocation(finding.source.file, finding.source.line),
-                                    state: { kind: 'source' },
-                                },
-                                // Intermediate hops
-                                ...finding.path.map(hop => ({
-                                    location: buildLocation(hop.file, hop.line),
-                                    state: { kind: 'passthrough' },
-                                })),
-                                // Sink
-                                {
-                                    location: buildLocation(finding.sink.file, finding.sink.line),
-                                    state: { kind: 'sink' },
-                                },
-                            ],
-                        },
-                    ],
-                },
-            ];
-        }
-        sarifResults.push(sarifResult);
-    }
-    return sarifResults;
-}
-/**
- * Build a SARIF location.
- */
-function buildLocation(uri, line) {
-    return {
-        physicalLocation: {
-            artifactLocation: { uri },
-            region: { startLine: line },
-        },
-    };
-}
-//# sourceMappingURL=project-sarif.js.map

package/dist/cli/formatters/project-sarif.js.map

@@ -1 +0,0 @@
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package/dist/cli/formatters/project-summary.d.ts

@@ -1,11 +0,0 @@
-/**
- * Project Summary Formatter
- *
- * Outputs a human-readable summary of project-level analysis.
- */
-import type { ProjectAnalysis } from 'circle-ir';
-/**
- * Format project analysis as human-readable summary.
- */
-export declare function formatProjectSummary(result: ProjectAnalysis): string;
-//# sourceMappingURL=project-summary.d.ts.map

package/dist/cli/formatters/project-summary.d.ts.map

@@ -1 +0,0 @@
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