circle-ir-ai 1.1.0

package/dist/dead-code/detector.js.map

@@ -0,0 +1 @@
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package/dist/dead-code/index.d.ts

@@ -0,0 +1,7 @@
+/**
+ * Dead Code Detection Module
+ *
+ * Provides tools for detecting unreachable code in a codebase.
+ */
+export { DeadCodeDetector, detectDeadCode, quickDeadCodeCheck, formatDeadCodeReport, type DeadCodeOptions, type DetectionProgress, type DeadCodeResult, type EntryPoint, type DeadCodeItem, type DeadCodeSummary, type CallGraphNode, } from './detector.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/dead-code/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/dead-code/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EACL,gBAAgB,EAChB,cAAc,EACd,kBAAkB,EAClB,oBAAoB,EACpB,KAAK,eAAe,EACpB,KAAK,iBAAiB,EACtB,KAAK,cAAc,EACnB,KAAK,UAAU,EACf,KAAK,YAAY,EACjB,KAAK,eAAe,EACpB,KAAK,aAAa,GACnB,MAAM,eAAe,CAAC"}

package/dist/dead-code/index.js

@@ -0,0 +1,7 @@
+/**
+ * Dead Code Detection Module
+ *
+ * Provides tools for detecting unreachable code in a codebase.
+ */
+export { DeadCodeDetector, detectDeadCode, quickDeadCodeCheck, formatDeadCodeReport, } from './detector.js';
+//# sourceMappingURL=index.js.map

package/dist/dead-code/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/dead-code/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EACL,gBAAgB,EAChB,cAAc,EACd,kBAAkB,EAClB,oBAAoB,GAQrB,MAAM,eAAe,CAAC"}

package/dist/extractors/index.d.ts

@@ -0,0 +1,15 @@
+/**
+ * Extractors Module
+ *
+ * Universal extraction layer for converting any codebase artifact to CircleIR.
+ *
+ * Supported extractors:
+ * - TreeSitterExtractor: Code files (Java, Python, TS, Rust) → CircleIR
+ * - NaturalLanguageExtractor: SKILL.md, instructions → CircleIR
+ * - Future: SchemaExtractor: JSON/YAML configs → CircleIR
+ */
+export type { CodebaseExtractor } from './types.js';
+export { ExtractorRegistry, createDefaultExtractorRegistry } from './types.js';
+export { TreeSitterExtractor } from './tree-sitter.js';
+export { NaturalLanguageExtractor } from './natural-language.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/extractors/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/extractors/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,YAAY,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AACpD,OAAO,EAAE,iBAAiB,EAAE,8BAA8B,EAAE,MAAM,YAAY,CAAC;AAC/E,OAAO,EAAE,mBAAmB,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,wBAAwB,EAAE,MAAM,uBAAuB,CAAC"}

package/dist/extractors/index.js

@@ -0,0 +1,14 @@
+/**
+ * Extractors Module
+ *
+ * Universal extraction layer for converting any codebase artifact to CircleIR.
+ *
+ * Supported extractors:
+ * - TreeSitterExtractor: Code files (Java, Python, TS, Rust) → CircleIR
+ * - NaturalLanguageExtractor: SKILL.md, instructions → CircleIR
+ * - Future: SchemaExtractor: JSON/YAML configs → CircleIR
+ */
+export { ExtractorRegistry, createDefaultExtractorRegistry } from './types.js';
+export { TreeSitterExtractor } from './tree-sitter.js';
+export { NaturalLanguageExtractor } from './natural-language.js';
+//# sourceMappingURL=index.js.map

package/dist/extractors/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/extractors/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAGH,OAAO,EAAE,iBAAiB,EAAE,8BAA8B,EAAE,MAAM,YAAY,CAAC;AAC/E,OAAO,EAAE,mBAAmB,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,wBAAwB,EAAE,MAAM,uBAAuB,CAAC"}

package/dist/extractors/natural-language.d.ts

@@ -0,0 +1,46 @@
+/**
+ * Natural Language Extractor
+ *
+ * Extracts CircleIR from natural language instructions (SKILL.md, README, etc.)
+ * using LLM semantic understanding.
+ *
+ * Key insight: Natural language instructions ARE executable code - just parsed by
+ * LLMs instead of tree-sitter. Both specify program behavior and data flows.
+ */
+import type { CircleIR } from 'circle-ir';
+import type { CodebaseExtractor } from './types.js';
+/**
+ * NaturalLanguageExtractor - Extracts CircleIR from instructions using LLM
+ *
+ * Converts natural language instructions (e.g., "Get user input and execute SQL query")
+ * into taint analysis format (sources, sinks, flows).
+ *
+ * After extraction, the SAME taint analysis engine processes this as any code file.
+ */
+export declare class NaturalLanguageExtractor implements CodebaseExtractor {
+    readonly name = "NaturalLanguageExtractor";
+    private static readonly INSTRUCTION_PATTERNS;
+    canHandle(filePath: string): boolean;
+    extract(content: string, filePath: string): Promise<CircleIR>;
+    /**
+     * Extract semantic facts from natural language using LLM
+     */
+    private extractSemanticFacts;
+    /**
+     * Map LLM extraction result to CircleIR format
+     */
+    private mapToCircleIR;
+    /**
+     * Normalize source type to valid SourceType
+     */
+    private normalizeSourceType;
+    /**
+     * Normalize sink type to valid SinkType
+     */
+    private normalizeSinkType;
+    /**
+     * Normalize severity to valid Severity
+     */
+    private normalizeSeverity;
+}
+//# sourceMappingURL=natural-language.d.ts.map

package/dist/extractors/natural-language.d.ts.map

@@ -0,0 +1 @@
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package/dist/extractors/natural-language.js

@@ -0,0 +1,228 @@
+/**
+ * Natural Language Extractor
+ *
+ * Extracts CircleIR from natural language instructions (SKILL.md, README, etc.)
+ * using LLM semantic understanding.
+ *
+ * Key insight: Natural language instructions ARE executable code - just parsed by
+ * LLMs instead of tree-sitter. Both specify program behavior and data flows.
+ */
+import { getAxLLMClient } from '../llm/ax-client.js';
+/**
+ * NaturalLanguageExtractor - Extracts CircleIR from instructions using LLM
+ *
+ * Converts natural language instructions (e.g., "Get user input and execute SQL query")
+ * into taint analysis format (sources, sinks, flows).
+ *
+ * After extraction, the SAME taint analysis engine processes this as any code file.
+ */
+export class NaturalLanguageExtractor {
+    name = 'NaturalLanguageExtractor';
+    static INSTRUCTION_PATTERNS = [
+        'SKILL.md',
+        'skill.md',
+        'INSTRUCTIONS.md',
+        'instructions.md',
+        'README.md', // Common for instruction-only skills
+    ];
+    canHandle(filePath) {
+        const fileName = filePath.split('/').pop() || '';
+        // Check exact matches
+        if (NaturalLanguageExtractor.INSTRUCTION_PATTERNS.includes(fileName)) {
+            return true;
+        }
+        // Check if filename contains "skill" or "instruction"
+        const lowerName = fileName.toLowerCase();
+        if (lowerName.includes('skill') || lowerName.includes('instruction')) {
+            return lowerName.endsWith('.md') || lowerName.endsWith('.txt');
+        }
+        return false;
+    }
+    async extract(content, filePath) {
+        // Extract semantic facts via LLM
+        const extractionResult = await this.extractSemanticFacts(content);
+        // Map to CircleIR format
+        return this.mapToCircleIR(extractionResult, content, filePath);
+    }
+    /**
+     * Extract semantic facts from natural language using LLM
+     */
+    async extractSemanticFacts(content) {
+        const llm = getAxLLMClient();
+        const systemPrompt = `You are a security analyst extracting taint analysis facts from AI skill instructions.
+
+Your task: Convert natural language instructions into structured taint analysis format.
+
+**Extract:**
+
+1. **Sources** - Where does data enter the system?
+   - User input (form fields, parameters, prompts)
+   - HTTP requests (API calls, webhooks)
+   - File reads (config files, user uploads)
+   - Environment variables (API keys, secrets)
+   - MCP tool inputs (data from Claude/LLM)
+   - Database reads
+
+2. **Sinks** - What dangerous operations are performed?
+   - SQL execution (database queries, ORM calls)
+   - Command execution (shell commands, subprocess)
+   - File writes (creating/modifying files)
+   - HTTP requests (external API calls)
+   - Code execution (eval, exec, dynamic imports)
+   - Log writes (sensitive data exposure)
+
+3. **Data flows** - How does data move from sources to sinks?
+   - Direct: "Take user input and execute as SQL"
+   - Indirect: "Store user input in variable, then use in command"
+
+**Output format:** JSON with sources, sinks, and flows arrays.
+
+**Be precise:**
+- Only extract what is EXPLICITLY stated in the instructions
+- Assign confidence 0.9+ for explicit statements
+- Assign confidence 0.6-0.8 for implicit/inferred behavior
+- Assign appropriate CWE codes for sinks
+- Use standard severity levels: critical, high, medium, low`;
+        const userPrompt = `Extract taint sources, sinks, and flows from these instructions:
+
+\`\`\`markdown
+${content}
+\`\`\`
+
+Return JSON:
+{
+  "sources": [
+    {
+      "type": "user_input" | "http_request" | "file_read" | "env_var" | "mcp_tool_input" | "database_read",
+      "location": "step number, line reference, or description of where in instructions",
+      "description": "what the instruction says (quote relevant text)",
+      "severity": "high" | "medium" | "low",
+      "confidence": 0.0-1.0
+    }
+  ],
+  "sinks": [
+    {
+      "type": "sql_execution" | "command_execution" | "file_write" | "http_request" | "code_execution" | "log_write",
+      "cwe": "CWE-XX" (assign appropriate CWE code),
+      "location": "step number, line reference, or description",
+      "description": "what dangerous operation (quote relevant text)",
+      "severity": "critical" | "high" | "medium" | "low",
+      "confidence": 0.0-1.0
+    }
+  ],
+  "flows": [
+    {
+      "from": source_index (0-based),
+      "to": sink_index (0-based),
+      "description": "how data flows from source to sink"
+    }
+  ]
+}
+
+If no sources/sinks found, return empty arrays.`;
+        try {
+            const result = await llm.chatJSON(systemPrompt, userPrompt, 'enrichment');
+            if (!result) {
+                // Return empty result if LLM fails
+                return { sources: [], sinks: [], flows: [] };
+            }
+            return result;
+        }
+        catch (error) {
+            console.error('LLM extraction failed:', error);
+            // Return empty result on error
+            return { sources: [], sinks: [], flows: [] };
+        }
+    }
+    /**
+     * Map LLM extraction result to CircleIR format
+     */
+    mapToCircleIR(extraction, content, filePath) {
+        // Map sources
+        const sources = extraction.sources.map((s, index) => ({
+            type: this.normalizeSourceType(s.type),
+            location: s.location + ' | ' + s.description,
+            line: index + 1, // Approximate line number
+            severity: this.normalizeSeverity(s.severity),
+            confidence: s.confidence,
+        }));
+        // Map sinks
+        const sinks = extraction.sinks.map((s, index) => ({
+            type: this.normalizeSinkType(s.type),
+            cwe: s.cwe,
+            location: s.location + ' | ' + s.description,
+            line: index + 1, // Approximate line number
+            confidence: s.confidence,
+        }));
+        // Return CircleIR
+        return {
+            meta: {
+                circle_ir: '3.0',
+                file: filePath,
+                language: 'javascript', // Use javascript as placeholder (will be filtered later)
+                loc: content.split('\n').length,
+                hash: '0000000000000000', // Placeholder hash (16 chars)
+            },
+            taint: {
+                sources,
+                sinks,
+            },
+            types: [],
+            calls: [],
+            cfg: { blocks: [], edges: [] },
+            dfg: { defs: [], uses: [] },
+            imports: [],
+            exports: [],
+            unresolved: [],
+            enriched: {},
+        };
+    }
+    /**
+     * Normalize source type to valid SourceType
+     */
+    normalizeSourceType(type) {
+        const normalized = type.toLowerCase().replace(/-/g, '_');
+        // Map to valid SourceType values from circle-ir
+        const mapping = {
+            user_input: 'http_param',
+            http_request: 'http_header',
+            file_read: 'file_input',
+            env_var: 'env_input',
+            mcp_tool_input: 'http_param', // MCP input is user-controlled
+            database_read: 'db_input',
+        };
+        return mapping[normalized] || 'http_param';
+    }
+    /**
+     * Normalize sink type to valid SinkType
+     */
+    normalizeSinkType(type) {
+        const normalized = type.toLowerCase().replace(/_/g, '_');
+        // Map to valid SinkType values
+        const mapping = {
+            sql_execution: 'sql_injection',
+            command_execution: 'command_injection',
+            file_write: 'path_traversal',
+            http_request: 'ssrf',
+            code_execution: 'code_injection',
+            log_write: 'log_injection',
+        };
+        return mapping[normalized] || 'sql_injection';
+    }
+    /**
+     * Normalize severity to valid Severity
+     */
+    normalizeSeverity(severity) {
+        const normalized = severity.toLowerCase();
+        if (normalized === 'critical' || normalized === 'high') {
+            return 'high';
+        }
+        else if (normalized === 'medium') {
+            return 'medium';
+        }
+        else {
+            return 'low';
+        }
+    }
+}
+//# sourceMappingURL=natural-language.js.map

package/dist/extractors/natural-language.js.map

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package/dist/extractors/tree-sitter.d.ts

@@ -0,0 +1,33 @@
+/**
+ * Tree-sitter Extractor
+ *
+ * Wraps circle-ir's existing analyze() function to conform to CodebaseExtractor interface.
+ * Handles code files: Java, JavaScript, TypeScript, Python, Rust.
+ */
+import { type CircleIR } from 'circle-ir';
+import type { CodebaseExtractor } from './types.js';
+/**
+ * TreeSitterExtractor - Extracts CircleIR from code files using tree-sitter
+ *
+ * This is a thin wrapper around circle-ir's analyze() function.
+ * No changes to circle-ir core - purely additive.
+ */
+export declare class TreeSitterExtractor implements CodebaseExtractor {
+    readonly name = "TreeSitterExtractor";
+    private static readonly SUPPORTED_EXTENSIONS;
+    canHandle(filePath: string): boolean;
+    extract(content: string, filePath: string): Promise<CircleIR>;
+    /**
+     * Detect language from file extension
+     */
+    private detectLanguage;
+    /**
+     * Check if a language is supported
+     */
+    static isLanguageSupported(language: string): boolean;
+    /**
+     * Get all supported extensions
+     */
+    static getSupportedExtensions(): string[];
+}
+//# sourceMappingURL=tree-sitter.d.ts.map

package/dist/extractors/tree-sitter.d.ts.map

@@ -0,0 +1 @@
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package/dist/extractors/tree-sitter.js

@@ -0,0 +1,69 @@
+/**
+ * Tree-sitter Extractor
+ *
+ * Wraps circle-ir's existing analyze() function to conform to CodebaseExtractor interface.
+ * Handles code files: Java, JavaScript, TypeScript, Python, Rust.
+ */
+import * as path from 'path';
+import { analyze, initAnalyzer, isAnalyzerInitialized, } from 'circle-ir';
+/**
+ * TreeSitterExtractor - Extracts CircleIR from code files using tree-sitter
+ *
+ * This is a thin wrapper around circle-ir's analyze() function.
+ * No changes to circle-ir core - purely additive.
+ */
+export class TreeSitterExtractor {
+    name = 'TreeSitterExtractor';
+    static SUPPORTED_EXTENSIONS = new Map([
+        ['.java', 'java'],
+        ['.js', 'javascript'],
+        ['.jsx', 'javascript'],
+        ['.mjs', 'javascript'],
+        ['.cjs', 'javascript'],
+        ['.ts', 'typescript'],
+        ['.tsx', 'typescript'],
+        ['.mts', 'typescript'],
+        ['.cts', 'typescript'],
+        ['.py', 'python'],
+        ['.rs', 'rust'],
+    ]);
+    canHandle(filePath) {
+        const ext = path.extname(filePath).toLowerCase();
+        return TreeSitterExtractor.SUPPORTED_EXTENSIONS.has(ext);
+    }
+    async extract(content, filePath) {
+        // Ensure analyzer is initialized
+        if (!isAnalyzerInitialized()) {
+            await initAnalyzer();
+        }
+        // Detect language from file extension
+        const language = this.detectLanguage(filePath);
+        // Use existing circle-ir analyzer (NO CHANGES to circle-ir!)
+        return await analyze(content, filePath, language);
+    }
+    /**
+     * Detect language from file extension
+     */
+    detectLanguage(filePath) {
+        const ext = path.extname(filePath).toLowerCase();
+        const language = TreeSitterExtractor.SUPPORTED_EXTENSIONS.get(ext);
+        if (!language) {
+            throw new Error(`Unsupported file extension: ${ext} (${filePath})`);
+        }
+        return language;
+    }
+    /**
+     * Check if a language is supported
+     */
+    static isLanguageSupported(language) {
+        const validLanguages = ['java', 'javascript', 'typescript', 'python', 'rust'];
+        return validLanguages.includes(language);
+    }
+    /**
+     * Get all supported extensions
+     */
+    static getSupportedExtensions() {
+        return Array.from(TreeSitterExtractor.SUPPORTED_EXTENSIONS.keys());
+    }
+}
+//# sourceMappingURL=tree-sitter.js.map

package/dist/extractors/tree-sitter.js.map

@@ -0,0 +1 @@
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package/dist/extractors/types.d.ts

@@ -0,0 +1,62 @@
+/**
+ * Extractor Types
+ *
+ * Universal extraction interface for all codebase artifacts.
+ * Enables unified analysis of code, natural language, and configuration files.
+ */
+import type { CircleIR } from 'circle-ir';
+/**
+ * CodebaseExtractor - Universal interface for extracting CircleIR from any artifact
+ *
+ * Each extractor converts a different artifact type to the universal CircleIR format:
+ * - TreeSitterExtractor: Code files (Java, Python, TS) → CircleIR
+ * - NaturalLanguageExtractor: SKILL.md, instructions → CircleIR
+ * - SchemaExtractor: JSON/YAML configs → CircleIR
+ *
+ * After extraction, ALL artifacts go through the SAME taint analysis engine.
+ */
+export interface CodebaseExtractor {
+    /**
+     * Check if this extractor can handle the given file
+     */
+    canHandle(filePath: string): boolean;
+    /**
+     * Extract CircleIR from file content
+     *
+     * @param content - Raw file content
+     * @param filePath - File path (for language detection and metadata)
+     * @returns CircleIR representation of the artifact
+     */
+    extract(content: string, filePath: string): Promise<CircleIR>;
+    /**
+     * Extractor name (for logging/debugging)
+     */
+    readonly name: string;
+}
+/**
+ * Extractor registry for managing multiple extractors
+ */
+export declare class ExtractorRegistry {
+    private extractors;
+    /**
+     * Register an extractor
+     */
+    register(extractor: CodebaseExtractor): void;
+    /**
+     * Find extractor for a given file path
+     */
+    findExtractor(filePath: string): CodebaseExtractor | undefined;
+    /**
+     * Extract CircleIR from a file using appropriate extractor
+     */
+    extract(content: string, filePath: string): Promise<CircleIR>;
+    /**
+     * Get all registered extractors
+     */
+    getExtractors(): CodebaseExtractor[];
+}
+/**
+ * Create default extractor registry with all built-in extractors
+ */
+export declare function createDefaultExtractorRegistry(): Promise<ExtractorRegistry>;
+//# sourceMappingURL=types.d.ts.map

package/dist/extractors/types.d.ts.map

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