circle-ir-ai 1.1.0

package/dist/cli/config.d.ts

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+/**
+ * Configuration File Loader
+ *
+ * Loads and parses .circle-ir.yaml configuration files.
+ */
+import type { TaintConfig } from 'circle-ir';
+/**
+ * User configuration file schema.
+ */
+export interface UserConfig {
+    project?: {
+        name?: string;
+        framework?: string;
+        framework_version?: string;
+    };
+    include?: string[];
+    exclude?: string[];
+    analysis?: {
+        max_files?: number;
+        timeout_ms?: number;
+        severity_threshold?: 'critical' | 'high' | 'medium' | 'low';
+    };
+    rules?: {
+        sources?: UserSourcePattern[];
+        sinks?: UserSinkPattern[];
+        sanitizers?: UserSanitizerPattern[];
+    };
+    overrides?: {
+        disable_rules?: string[];
+        severity_overrides?: Record<string, string>;
+    };
+}
+/**
+ * User-defined source pattern (simplified).
+ */
+export interface UserSourcePattern {
+    method?: string;
+    class?: string;
+    annotation?: string;
+    type: string;
+    severity?: 'critical' | 'high' | 'medium' | 'low';
+}
+/**
+ * User-defined sink pattern (simplified).
+ */
+export interface UserSinkPattern {
+    method: string;
+    class?: string;
+    type: string;
+    cwe: string;
+    severity?: 'critical' | 'high' | 'medium' | 'low';
+    arg_positions?: number[];
+}
+/**
+ * User-defined sanitizer pattern (simplified).
+ */
+export interface UserSanitizerPattern {
+    method?: string;
+    class?: string;
+    annotation?: string;
+    removes: string[];
+}
+/**
+ * Resolved configuration with all defaults applied.
+ */
+export interface ResolvedConfig {
+    project: {
+        name?: string;
+        framework?: string;
+        framework_version?: string;
+    };
+    include: string[];
+    exclude: string[];
+    analysis: {
+        max_files: number;
+        timeout_ms: number;
+        severity_threshold: 'critical' | 'high' | 'medium' | 'low';
+    };
+    taint: TaintConfig;
+    disabled_rules: Set<string>;
+    severity_overrides: Map<string, string>;
+}
+/**
+ * Find a config file by searching up from a directory.
+ */
+export declare function findConfigFile(startDir: string): string | null;
+/**
+ * Load a config file.
+ */
+export declare function loadConfigFile(configPath: string): UserConfig;
+/**
+ * Resolve configuration by merging user config with defaults.
+ */
+export declare function resolveConfig(userConfig: UserConfig | null): ResolvedConfig;
+/**
+ * Load and resolve configuration.
+ */
+export declare function loadConfig(configPath: string | null, startDir?: string): ResolvedConfig;
+/**
+ * Create an example config file.
+ */
+export declare function createExampleConfig(): string;
+//# sourceMappingURL=config.d.ts.map

package/dist/cli/config.d.ts.map

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package/dist/cli/config.js

@@ -0,0 +1,307 @@
+/**
+ * Configuration File Loader
+ *
+ * Loads and parses .circle-ir.yaml configuration files.
+ */
+import * as fs from 'fs';
+import * as path from 'path';
+import { DEFAULT_SOURCES, DEFAULT_SINKS, DEFAULT_SANITIZERS } from 'circle-ir';
+/**
+ * Default config file names to search for.
+ */
+const CONFIG_FILE_NAMES = [
+    '.circle-ir.yaml',
+    '.circle-ir.yml',
+    '.circle-ir.json',
+    'circle-ir.config.yaml',
+    'circle-ir.config.yml',
+    'circle-ir.config.json',
+];
+/**
+ * Find a config file by searching up from a directory.
+ */
+export function findConfigFile(startDir) {
+    let currentDir = path.resolve(startDir);
+    const root = path.parse(currentDir).root;
+    while (currentDir !== root) {
+        for (const configName of CONFIG_FILE_NAMES) {
+            const configPath = path.join(currentDir, configName);
+            if (fs.existsSync(configPath)) {
+                return configPath;
+            }
+        }
+        currentDir = path.dirname(currentDir);
+    }
+    return null;
+}
+/**
+ * Load a config file.
+ */
+export function loadConfigFile(configPath) {
+    const content = fs.readFileSync(configPath, 'utf-8');
+    const ext = path.extname(configPath).toLowerCase();
+    if (ext === '.json') {
+        return JSON.parse(content);
+    }
+    // Parse YAML (simple implementation for common cases)
+    return parseSimpleYaml(content);
+}
+/**
+ * Simple YAML parser for configuration files.
+ * Handles basic key-value pairs, arrays, and nested objects.
+ */
+function parseSimpleYaml(content) {
+    const lines = content.split('\n');
+    const result = {};
+    const stack = [{ obj: result, indent: -1 }];
+    for (let i = 0; i < lines.length; i++) {
+        const line = lines[i];
+        // Skip empty lines and comments
+        if (!line.trim() || line.trim().startsWith('#')) {
+            continue;
+        }
+        const indent = line.search(/\S/);
+        const trimmed = line.trim();
+        // Pop stack until we find the right parent
+        while (stack.length > 1 && stack[stack.length - 1].indent >= indent) {
+            stack.pop();
+        }
+        const parent = stack[stack.length - 1].obj;
+        // Array item
+        if (trimmed.startsWith('- ')) {
+            const value = trimmed.substring(2).trim();
+            if (!Array.isArray(parent)) {
+                // Find the array we're adding to
+                const keys = Object.keys(parent);
+                const lastKey = keys[keys.length - 1];
+                if (lastKey && !Array.isArray(parent[lastKey])) {
+                    parent[lastKey] = [];
+                }
+                if (value.includes(':')) {
+                    // Object in array
+                    const obj = {};
+                    parseInlineObject(value, obj);
+                    parent[lastKey].push(obj);
+                }
+                else {
+                    parent[lastKey].push(parseValue(value));
+                }
+            }
+            else {
+                parent.push(parseValue(value));
+            }
+            continue;
+        }
+        // Key-value pair
+        const colonIndex = trimmed.indexOf(':');
+        if (colonIndex > 0) {
+            const key = trimmed.substring(0, colonIndex).trim();
+            const valueStr = trimmed.substring(colonIndex + 1).trim();
+            if (valueStr === '' || valueStr === '|' || valueStr === '>') {
+                // Nested object or multiline string
+                parent[key] = {};
+                stack.push({ obj: parent[key], indent });
+            }
+            else {
+                parent[key] = parseValue(valueStr);
+            }
+        }
+    }
+    return result;
+}
+/**
+ * Parse inline object like "method: foo, class: Bar".
+ */
+function parseInlineObject(str, obj) {
+    const parts = str.split(',');
+    for (const part of parts) {
+        const colonIdx = part.indexOf(':');
+        if (colonIdx > 0) {
+            const key = part.substring(0, colonIdx).trim();
+            const value = part.substring(colonIdx + 1).trim();
+            obj[key] = parseValue(value);
+        }
+    }
+}
+/**
+ * Parse a YAML value.
+ */
+function parseValue(str) {
+    if (str === 'true')
+        return true;
+    if (str === 'false')
+        return false;
+    if (str === 'null')
+        return null;
+    if (/^-?\d+$/.test(str))
+        return parseInt(str, 10);
+    if (/^-?\d+\.\d+$/.test(str))
+        return parseFloat(str);
+    // Remove quotes
+    if ((str.startsWith('"') && str.endsWith('"')) ||
+        (str.startsWith("'") && str.endsWith("'"))) {
+        return str.slice(1, -1);
+    }
+    // Array notation
+    if (str.startsWith('[') && str.endsWith(']')) {
+        const inner = str.slice(1, -1).trim();
+        if (!inner)
+            return [];
+        return inner.split(',').map(s => parseValue(s.trim()));
+    }
+    return str;
+}
+/**
+ * Resolve configuration by merging user config with defaults.
+ */
+export function resolveConfig(userConfig) {
+    const sources = [...DEFAULT_SOURCES];
+    const sinks = [...DEFAULT_SINKS];
+    const sanitizers = [...DEFAULT_SANITIZERS];
+    // Add user-defined rules
+    if (userConfig?.rules?.sources) {
+        for (const source of userConfig.rules.sources) {
+            sources.push({
+                method: source.method,
+                class: source.class,
+                annotation: source.annotation,
+                type: source.type,
+                severity: (source.severity || 'high'),
+                return_tainted: source.method ? true : undefined,
+                param_tainted: source.annotation ? true : undefined,
+            });
+        }
+    }
+    if (userConfig?.rules?.sinks) {
+        for (const sink of userConfig.rules.sinks) {
+            sinks.push({
+                method: sink.method,
+                class: sink.class,
+                type: sink.type,
+                cwe: sink.cwe,
+                severity: (sink.severity || 'high'),
+                arg_positions: sink.arg_positions || [0],
+            });
+        }
+    }
+    if (userConfig?.rules?.sanitizers) {
+        for (const sanitizer of userConfig.rules.sanitizers) {
+            sanitizers.push({
+                method: sanitizer.method,
+                class: sanitizer.class,
+                annotation: sanitizer.annotation,
+                removes: sanitizer.removes,
+            });
+        }
+    }
+    // Build disabled rules set
+    const disabled_rules = new Set(userConfig?.overrides?.disable_rules || []);
+    // Filter out disabled sinks
+    const filteredSinks = sinks.filter(s => !disabled_rules.has(s.cwe));
+    // Build severity overrides map
+    const severity_overrides = new Map(Object.entries(userConfig?.overrides?.severity_overrides || {}));
+    return {
+        project: {
+            name: userConfig?.project?.name,
+            framework: userConfig?.project?.framework,
+            framework_version: userConfig?.project?.framework_version,
+        },
+        include: userConfig?.include || [],
+        exclude: userConfig?.exclude || [],
+        analysis: {
+            max_files: userConfig?.analysis?.max_files || 10000,
+            timeout_ms: userConfig?.analysis?.timeout_ms || 300000,
+            severity_threshold: userConfig?.analysis?.severity_threshold || 'low',
+        },
+        taint: {
+            sources,
+            sinks: filteredSinks,
+            sanitizers,
+        },
+        disabled_rules,
+        severity_overrides,
+    };
+}
+/**
+ * Load and resolve configuration.
+ */
+export function loadConfig(configPath, startDir = process.cwd()) {
+    let userConfig = null;
+    if (configPath) {
+        // Explicit config file
+        if (!fs.existsSync(configPath)) {
+            throw new Error(`Config file not found: ${configPath}`);
+        }
+        userConfig = loadConfigFile(configPath);
+    }
+    else {
+        // Search for config file
+        const foundConfig = findConfigFile(startDir);
+        if (foundConfig) {
+            userConfig = loadConfigFile(foundConfig);
+        }
+    }
+    return resolveConfig(userConfig);
+}
+/**
+ * Create an example config file.
+ */
+export function createExampleConfig() {
+    return `# Circle-IR Configuration File
+# Place this file as .circle-ir.yaml in your project root
+
+# Project metadata
+project:
+  name: my-project
+  framework: spring
+  framework_version: "5.3"
+
+# File discovery patterns
+include:
+  - "src/main/**/*.java"
+exclude:
+  - "**/test/**"
+  - "**/generated/**"
+
+# Analysis settings
+analysis:
+  max_files: 1000
+  timeout_ms: 300000
+  severity_threshold: medium
+
+# Custom security rules
+rules:
+  # Custom sources (where tainted data enters)
+  sources:
+    - method: getUnsafeInput
+      class: CustomInput
+      type: custom_input
+      severity: high
+
+  # Custom sinks (dangerous operations)
+  sinks:
+    - method: unsafeOperation
+      class: DangerousClass
+      type: custom_vulnerability
+      cwe: CWE-1234
+      severity: critical
+      arg_positions: [0, 1]
+
+  # Custom sanitizers
+  sanitizers:
+    - method: sanitizeInput
+      class: SecurityUtils
+      removes: [sql_injection, xss]
+
+# Rule overrides
+overrides:
+  # Disable specific rules by CWE ID
+  disable_rules:
+    - CWE-79  # Disable XSS checks
+
+  # Override severity for specific rules
+  severity_overrides:
+    CWE-89: critical  # Make SQL injection critical
+`;
+}
+//# sourceMappingURL=config.js.map

package/dist/cli/config.js.map

@@ -0,0 +1 @@
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package/dist/cli/discovery.d.ts

@@ -0,0 +1,31 @@
+/**
+ * File Discovery Module
+ *
+ * Discovers source files in directories for project-level analysis.
+ */
+export interface DiscoveryOptions {
+    include?: string[];
+    exclude?: string[];
+    maxFiles?: number;
+}
+export interface DiscoveredFile {
+    path: string;
+    relativePath: string;
+    language: 'java' | 'c' | 'cpp' | 'javascript' | 'typescript' | 'rust' | 'python';
+}
+/**
+ * Discover source files in a directory.
+ */
+export declare function discoverFiles(directory: string, options?: DiscoveryOptions): DiscoveredFile[];
+/**
+ * Read file contents.
+ */
+export declare function readFileContent(filePath: string): string;
+/**
+ * Get project statistics.
+ */
+export declare function getProjectStats(files: DiscoveredFile[]): {
+    total: number;
+    byLanguage: Record<string, number>;
+};
+//# sourceMappingURL=discovery.d.ts.map

package/dist/cli/discovery.d.ts.map

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package/dist/cli/discovery.js

@@ -0,0 +1,212 @@
+/**
+ * File Discovery Module
+ *
+ * Discovers source files in directories for project-level analysis.
+ */
+import * as fs from 'fs';
+import * as path from 'path';
+// Default file extensions by language
+const LANGUAGE_EXTENSIONS = {
+    java: ['.java'],
+    c: ['.c', '.h'],
+    cpp: ['.cpp', '.cc', '.cxx', '.hpp', '.hh', '.hxx'],
+    javascript: ['.js', '.jsx', '.mjs', '.cjs'],
+    typescript: ['.ts', '.tsx', '.mts', '.cts'],
+    rust: ['.rs'],
+    python: ['.py'],
+};
+// Default directories to exclude
+const DEFAULT_EXCLUDES = [
+    'node_modules',
+    '.git',
+    '.svn',
+    '.hg',
+    'build',
+    'dist',
+    'target',
+    'out',
+    'bin',
+    '.idea',
+    '.vscode',
+    '__pycache__',
+    '.gradle',
+    '.m2',
+    'vendor',
+    'test',
+    'tests',
+    '**/test/**',
+    '**/tests/**',
+];
+/**
+ * Discover source files in a directory.
+ */
+export function discoverFiles(directory, options = {}) {
+    const files = [];
+    const excludePatterns = [...DEFAULT_EXCLUDES, ...(options.exclude || [])];
+    const includePatterns = options.include || [];
+    const maxFiles = options.maxFiles || 10000;
+    // Get all supported extensions
+    const allExtensions = new Set();
+    for (const exts of Object.values(LANGUAGE_EXTENSIONS)) {
+        for (const ext of exts) {
+            allExtensions.add(ext);
+        }
+    }
+    // Recursively scan directory
+    scanDirectory(directory, directory, files, allExtensions, excludePatterns, includePatterns, maxFiles);
+    return files;
+}
+/**
+ * Recursively scan a directory for source files.
+ */
+function scanDirectory(rootDir, currentDir, files, extensions, excludePatterns, includePatterns, maxFiles) {
+    if (files.length >= maxFiles) {
+        return;
+    }
+    let entries;
+    try {
+        entries = fs.readdirSync(currentDir, { withFileTypes: true });
+    }
+    catch {
+        // Directory not readable, skip
+        return;
+    }
+    for (const entry of entries) {
+        if (files.length >= maxFiles) {
+            return;
+        }
+        const fullPath = path.join(currentDir, entry.name);
+        const relativePath = path.relative(rootDir, fullPath);
+        // Check excludes
+        if (shouldExclude(relativePath, entry.name, excludePatterns)) {
+            continue;
+        }
+        if (entry.isDirectory()) {
+            scanDirectory(rootDir, fullPath, files, extensions, excludePatterns, includePatterns, maxFiles);
+        }
+        else if (entry.isFile()) {
+            const ext = path.extname(entry.name).toLowerCase();
+            if (extensions.has(ext)) {
+                // Check includes if specified
+                if (includePatterns.length > 0 && !matchesAnyPattern(relativePath, includePatterns)) {
+                    continue;
+                }
+                const language = detectLanguage(ext);
+                if (language) {
+                    files.push({
+                        path: fullPath,
+                        relativePath,
+                        language,
+                    });
+                }
+            }
+        }
+    }
+}
+/**
+ * Check if a path should be excluded.
+ */
+function shouldExclude(relativePath, name, patterns) {
+    for (const pattern of patterns) {
+        // Simple pattern matching
+        if (pattern.includes('*')) {
+            // Glob-like pattern
+            const regex = patternToRegex(pattern);
+            if (regex.test(relativePath) || regex.test(name)) {
+                return true;
+            }
+        }
+        else {
+            // Exact match or path contains
+            if (name === pattern || relativePath.includes(pattern)) {
+                return true;
+            }
+        }
+    }
+    return false;
+}
+/**
+ * Check if path matches any include pattern.
+ */
+function matchesAnyPattern(relativePath, patterns) {
+    for (const pattern of patterns) {
+        if (pattern.includes('*')) {
+            const regex = patternToRegex(pattern);
+            if (regex.test(relativePath)) {
+                return true;
+            }
+        }
+        else {
+            if (relativePath.includes(pattern)) {
+                return true;
+            }
+        }
+    }
+    return false;
+}
+/**
+ * Convert glob pattern to regex.
+ */
+function patternToRegex(pattern) {
+    const escaped = pattern
+        .replace(/[.+^${}()|[\]\\]/g, '\\$&')
+        .replace(/\*\*/g, '{{GLOBSTAR}}')
+        .replace(/\*/g, '[^/]*')
+        .replace(/{{GLOBSTAR}}/g, '.*');
+    return new RegExp(escaped);
+}
+/**
+ * Detect language from file extension.
+ */
+function detectLanguage(ext) {
+    if (LANGUAGE_EXTENSIONS.java.includes(ext)) {
+        return 'java';
+    }
+    if (LANGUAGE_EXTENSIONS.c.includes(ext)) {
+        return 'c';
+    }
+    if (LANGUAGE_EXTENSIONS.cpp.includes(ext)) {
+        return 'cpp';
+    }
+    if (LANGUAGE_EXTENSIONS.javascript.includes(ext)) {
+        return 'javascript';
+    }
+    if (LANGUAGE_EXTENSIONS.typescript.includes(ext)) {
+        return 'typescript';
+    }
+    if (LANGUAGE_EXTENSIONS.rust.includes(ext)) {
+        return 'rust';
+    }
+    if (LANGUAGE_EXTENSIONS.python.includes(ext)) {
+        return 'python';
+    }
+    return null;
+}
+/**
+ * Read file contents.
+ */
+export function readFileContent(filePath) {
+    return fs.readFileSync(filePath, 'utf-8');
+}
+/**
+ * Get project statistics.
+ */
+export function getProjectStats(files) {
+    const byLanguage = {
+        java: 0,
+        c: 0,
+        cpp: 0,
+        javascript: 0,
+        typescript: 0,
+        rust: 0,
+        python: 0,
+    };
+    for (const file of files) {
+        byLanguage[file.language]++;
+    }
+    return {
+        total: files.length,
+        byLanguage,
+    };
+}
+//# sourceMappingURL=discovery.js.map

package/dist/cli/discovery.js.map

@@ -0,0 +1 @@
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