burhan-mop 0.1.0

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Files changed (382) hide show
  1. package/.agents/AGENTS.md +54 -0
  2. package/.agents/skills/auto-deploy/SKILL.md +48 -0
  3. package/.agents/skills/autosycn/SKILL.md +75 -0
  4. package/.agents/skills/mop-help/SKILL.md +35 -0
  5. package/.agents/skills/ruflo-core/SKILL.md +35 -0
  6. package/.claude/agents/analysis/analyze-code-quality.md +179 -0
  7. package/.claude/agents/analysis/code-analyzer.md +210 -0
  8. package/.claude/agents/analysis/code-review/analyze-code-quality.md +179 -0
  9. package/.claude/agents/architecture/arch-system-design.md +157 -0
  10. package/.claude/agents/architecture/system-design/arch-system-design.md +155 -0
  11. package/.claude/agents/browser/browser-agent.yaml +182 -0
  12. package/.claude/agents/consensus/byzantine-coordinator.md +63 -0
  13. package/.claude/agents/consensus/crdt-synchronizer.md +997 -0
  14. package/.claude/agents/consensus/gossip-coordinator.md +63 -0
  15. package/.claude/agents/consensus/performance-benchmarker.md +851 -0
  16. package/.claude/agents/consensus/quorum-manager.md +823 -0
  17. package/.claude/agents/consensus/raft-manager.md +63 -0
  18. package/.claude/agents/consensus/security-manager.md +622 -0
  19. package/.claude/agents/core/planner.md +375 -0
  20. package/.claude/agents/custom/test-long-runner.md +44 -0
  21. package/.claude/agents/data/data-ml-model.md +445 -0
  22. package/.claude/agents/data/ml/data-ml-model.md +193 -0
  23. package/.claude/agents/development/backend/dev-backend-api.md +142 -0
  24. package/.claude/agents/development/dev-backend-api.md +345 -0
  25. package/.claude/agents/devops/ci-cd/ops-cicd-github.md +164 -0
  26. package/.claude/agents/devops/ops-cicd-github.md +165 -0
  27. package/.claude/agents/documentation/api-docs/docs-api-openapi.md +174 -0
  28. package/.claude/agents/documentation/docs-api-openapi.md +355 -0
  29. package/.claude/agents/flow-nexus/app-store.md +88 -0
  30. package/.claude/agents/flow-nexus/authentication.md +69 -0
  31. package/.claude/agents/flow-nexus/challenges.md +81 -0
  32. package/.claude/agents/flow-nexus/neural-network.md +88 -0
  33. package/.claude/agents/flow-nexus/payments.md +83 -0
  34. package/.claude/agents/flow-nexus/sandbox.md +76 -0
  35. package/.claude/agents/flow-nexus/swarm.md +76 -0
  36. package/.claude/agents/flow-nexus/user-tools.md +96 -0
  37. package/.claude/agents/flow-nexus/workflow.md +84 -0
  38. package/.claude/agents/github/code-review-swarm.md +377 -0
  39. package/.claude/agents/github/github-modes.md +173 -0
  40. package/.claude/agents/github/issue-tracker.md +576 -0
  41. package/.claude/agents/github/multi-repo-swarm.md +553 -0
  42. package/.claude/agents/github/pr-manager.md +438 -0
  43. package/.claude/agents/github/project-board-sync.md +509 -0
  44. package/.claude/agents/github/release-manager.md +605 -0
  45. package/.claude/agents/github/release-swarm.md +583 -0
  46. package/.claude/agents/github/repo-architect.md +398 -0
  47. package/.claude/agents/github/swarm-issue.md +573 -0
  48. package/.claude/agents/github/swarm-pr.md +428 -0
  49. package/.claude/agents/github/sync-coordinator.md +452 -0
  50. package/.claude/agents/github/workflow-automation.md +903 -0
  51. package/.claude/agents/goal/agent.md +816 -0
  52. package/.claude/agents/optimization/benchmark-suite.md +665 -0
  53. package/.claude/agents/optimization/load-balancer.md +431 -0
  54. package/.claude/agents/optimization/performance-monitor.md +672 -0
  55. package/.claude/agents/optimization/resource-allocator.md +674 -0
  56. package/.claude/agents/optimization/topology-optimizer.md +808 -0
  57. package/.claude/agents/payments/agentic-payments.md +126 -0
  58. package/.claude/agents/sona/sona-learning-optimizer.md +74 -0
  59. package/.claude/agents/sparc/architecture.md +699 -0
  60. package/.claude/agents/sparc/pseudocode.md +520 -0
  61. package/.claude/agents/sparc/refinement.md +802 -0
  62. package/.claude/agents/sparc/specification.md +478 -0
  63. package/.claude/agents/specialized/mobile/spec-mobile-react-native.md +225 -0
  64. package/.claude/agents/specialized/spec-mobile-react-native.md +227 -0
  65. package/.claude/agents/sublinear/consensus-coordinator.md +338 -0
  66. package/.claude/agents/sublinear/matrix-optimizer.md +185 -0
  67. package/.claude/agents/sublinear/pagerank-analyzer.md +299 -0
  68. package/.claude/agents/sublinear/performance-optimizer.md +368 -0
  69. package/.claude/agents/sublinear/trading-predictor.md +246 -0
  70. package/.claude/agents/swarm/adaptive-coordinator.md +1127 -0
  71. package/.claude/agents/swarm/hierarchical-coordinator.md +710 -0
  72. package/.claude/agents/swarm/mesh-coordinator.md +963 -0
  73. package/.claude/agents/templates/automation-smart-agent.md +205 -0
  74. package/.claude/agents/templates/base-template-generator.md +289 -0
  75. package/.claude/agents/templates/coordinator-swarm-init.md +90 -0
  76. package/.claude/agents/templates/github-pr-manager.md +177 -0
  77. package/.claude/agents/templates/implementer-sparc-coder.md +259 -0
  78. package/.claude/agents/templates/memory-coordinator.md +187 -0
  79. package/.claude/agents/templates/orchestrator-task.md +139 -0
  80. package/.claude/agents/templates/performance-analyzer.md +199 -0
  81. package/.claude/agents/templates/sparc-coordinator.md +514 -0
  82. package/.claude/agents/testing/production-validator.md +395 -0
  83. package/.claude/agents/testing/tdd-london-swarm.md +244 -0
  84. package/.claude/agents/v3/aidefence-guardian.md +282 -0
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  92. package/.claude/agents/v3/security-architect-aidefence.md +410 -0
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  94. package/.claude/agents/v3/swarm-memory-manager.md +157 -0
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  96. package/.claude/commands/agents/README.md +50 -0
  97. package/.claude/commands/agents/agent-capabilities.md +140 -0
  98. package/.claude/commands/agents/agent-coordination.md +28 -0
  99. package/.claude/commands/agents/agent-spawning.md +28 -0
  100. package/.claude/commands/agents/agent-types.md +216 -0
  101. package/.claude/commands/agents/health.md +139 -0
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  103. package/.claude/commands/agents/logs.md +130 -0
  104. package/.claude/commands/agents/metrics.md +122 -0
  105. package/.claude/commands/agents/pool.md +127 -0
  106. package/.claude/commands/agents/spawn.md +140 -0
  107. package/.claude/commands/agents/status.md +115 -0
  108. package/.claude/commands/agents/stop.md +102 -0
  109. package/.claude/commands/analysis/COMMAND_COMPLIANCE_REPORT.md +54 -0
  110. package/.claude/commands/analysis/README.md +9 -0
  111. package/.claude/commands/analysis/bottleneck-detect.md +162 -0
  112. package/.claude/commands/analysis/performance-bottlenecks.md +59 -0
  113. package/.claude/commands/analysis/performance-report.md +25 -0
  114. package/.claude/commands/analysis/token-efficiency.md +45 -0
  115. package/.claude/commands/analysis/token-usage.md +25 -0
  116. package/.claude/commands/automation/README.md +9 -0
  117. package/.claude/commands/automation/auto-agent.md +122 -0
  118. package/.claude/commands/automation/self-healing.md +106 -0
  119. package/.claude/commands/automation/session-memory.md +90 -0
  120. package/.claude/commands/automation/smart-agents.md +73 -0
  121. package/.claude/commands/automation/smart-spawn.md +25 -0
  122. package/.claude/commands/automation/workflow-select.md +25 -0
  123. package/.claude/commands/claude-flow-help.md +103 -0
  124. package/.claude/commands/claude-flow-memory.md +107 -0
  125. package/.claude/commands/claude-flow-swarm.md +205 -0
  126. package/.claude/commands/coordination/README.md +9 -0
  127. package/.claude/commands/coordination/agent-spawn.md +25 -0
  128. package/.claude/commands/coordination/init.md +44 -0
  129. package/.claude/commands/coordination/orchestrate.md +43 -0
  130. package/.claude/commands/coordination/spawn.md +45 -0
  131. package/.claude/commands/coordination/swarm-init.md +85 -0
  132. package/.claude/commands/coordination/task-orchestrate.md +25 -0
  133. package/.claude/commands/github/README.md +11 -0
  134. package/.claude/commands/github/code-review-swarm.md +514 -0
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  136. package/.claude/commands/github/github-modes.md +147 -0
  137. package/.claude/commands/github/github-swarm.md +121 -0
  138. package/.claude/commands/github/issue-tracker.md +292 -0
  139. package/.claude/commands/github/issue-triage.md +25 -0
  140. package/.claude/commands/github/multi-repo-swarm.md +519 -0
  141. package/.claude/commands/github/pr-enhance.md +26 -0
  142. package/.claude/commands/github/pr-manager.md +170 -0
  143. package/.claude/commands/github/project-board-sync.md +471 -0
  144. package/.claude/commands/github/release-manager.md +340 -0
  145. package/.claude/commands/github/release-swarm.md +544 -0
  146. package/.claude/commands/github/repo-analyze.md +25 -0
  147. package/.claude/commands/github/repo-architect.md +367 -0
  148. package/.claude/commands/github/swarm-issue.md +485 -0
  149. package/.claude/commands/github/swarm-pr.md +288 -0
  150. package/.claude/commands/github/sync-coordinator.md +303 -0
  151. package/.claude/commands/github/workflow-automation.md +442 -0
  152. package/.claude/commands/hive-mind/README.md +17 -0
  153. package/.claude/commands/hive-mind/hive-mind-consensus.md +8 -0
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  320. package/.claude/skills/github-code-review/SKILL.md +1125 -0
  321. package/.claude/skills/github-multi-repo/SKILL.md +862 -0
  322. package/.claude/skills/github-project-management/SKILL.md +1262 -0
  323. package/.claude/skills/github-release-management/SKILL.md +1064 -0
  324. package/.claude/skills/github-workflow-automation/SKILL.md +1047 -0
  325. package/.claude/skills/hooks-automation/SKILL.md +1201 -0
  326. package/.claude/skills/mop-help/SKILL.md +35 -0
  327. package/.claude/skills/pair-programming/SKILL.md +1202 -0
  328. package/.claude/skills/reasoningbank-agentdb/SKILL.md +446 -0
  329. package/.claude/skills/reasoningbank-intelligence/SKILL.md +201 -0
  330. package/.claude/skills/skill-builder/SKILL.md +910 -0
  331. package/.claude/skills/sparc-methodology/SKILL.md +1106 -0
  332. package/.claude/skills/stream-chain/SKILL.md +560 -0
  333. package/.claude/skills/swarm-advanced/SKILL.md +970 -0
  334. package/.claude/skills/swarm-orchestration/SKILL.md +179 -0
  335. package/.claude/skills/v3-cli-modernization/SKILL.md +872 -0
  336. package/.claude/skills/v3-core-implementation/SKILL.md +797 -0
  337. package/.claude/skills/v3-ddd-architecture/SKILL.md +442 -0
  338. package/.claude/skills/v3-integration-deep/SKILL.md +241 -0
  339. package/.claude/skills/v3-mcp-optimization/SKILL.md +777 -0
  340. package/.claude/skills/v3-memory-unification/SKILL.md +174 -0
  341. package/.claude/skills/v3-performance-optimization/SKILL.md +390 -0
  342. package/.claude/skills/v3-security-overhaul/SKILL.md +82 -0
  343. package/.claude/skills/v3-swarm-coordination/SKILL.md +340 -0
  344. package/.claude/skills/verification-quality/SKILL.md +691 -0
  345. package/.claude-flow/CAPABILITIES.md +403 -0
  346. package/.claude-flow/config.yaml +43 -0
  347. package/.claude-flow/metrics/learning.json +17 -0
  348. package/.claude-flow/metrics/swarm-activity.json +18 -0
  349. package/.claude-flow/metrics/v3-progress.json +26 -0
  350. package/.claude-flow/security/audit-status.json +8 -0
  351. package/.codex/config.toml +39 -0
  352. package/.gemini/settings.json +49 -0
  353. package/.mcp.json +55 -0
  354. package/.memoryofplanet/PROTOCOL.md +436 -0
  355. package/.memoryofplanet/STATE.json +561 -0
  356. package/.memoryofplanet/config/defaults.json +46 -0
  357. package/.memoryofplanet/config/team.json +7 -0
  358. package/.memoryofplanet/scripts/burhan-mop.mjs +124 -0
  359. package/.memoryofplanet/scripts/mop-auto-deploy.mjs +153 -0
  360. package/.memoryofplanet/scripts/mop-autosycn.mjs +617 -0
  361. package/.memoryofplanet/scripts/mop-core.mjs +774 -0
  362. package/.memoryofplanet/scripts/mop-workflow.mjs +348 -0
  363. package/.memoryofplanet/templates/artifacts/adversarial-review.md +33 -0
  364. package/.memoryofplanet/templates/artifacts/architecture.md +28 -0
  365. package/.memoryofplanet/templates/artifacts/decision-log.md +21 -0
  366. package/.memoryofplanet/templates/artifacts/handoff.md +21 -0
  367. package/.memoryofplanet/templates/artifacts/implementation-notes.md +21 -0
  368. package/.memoryofplanet/templates/artifacts/prd.md +29 -0
  369. package/.memoryofplanet/templates/artifacts/product-brief.md +30 -0
  370. package/.memoryofplanet/templates/artifacts/readiness-report.md +25 -0
  371. package/.memoryofplanet/templates/artifacts/release-notes.md +21 -0
  372. package/.memoryofplanet/templates/artifacts/review.md +21 -0
  373. package/.memoryofplanet/templates/artifacts/story.md +25 -0
  374. package/.memoryofplanet/templates/artifacts/ux-spec.md +32 -0
  375. package/AGENTS.md +126 -0
  376. package/CLAUDE.md +235 -0
  377. package/GEMINI.md +19 -0
  378. package/README.md +1096 -0
  379. package/bin/burhan-mop.mjs +2 -0
  380. package/bin/mop-core.mjs +2 -0
  381. package/bin/mop-workflow.mjs +2 -0
  382. package/package.json +66 -0
@@ -0,0 +1,1031 @@
1
+ #!/usr/bin/env node
2
+ /**
3
+ * Intelligence Layer (ADR-050)
4
+ *
5
+ * Closes the intelligence loop by wiring PageRank-ranked memory into
6
+ * the hook system. Pure CJS — no ESM imports of @claude-flow/memory.
7
+ *
8
+ * Data files (all under .claude-flow/data/):
9
+ * auto-memory-store.json — written by auto-memory-hook.mjs
10
+ * graph-state.json — serialized graph (nodes + edges + pageRanks)
11
+ * ranked-context.json — pre-computed ranked entries for fast lookup
12
+ * pending-insights.jsonl — append-only edit/task log
13
+ */
14
+
15
+ 'use strict';
16
+
17
+ const fs = require('fs');
18
+ const path = require('path');
19
+
20
+ const DATA_DIR = path.join(process.cwd(), '.claude-flow', 'data');
21
+ const STORE_PATH = path.join(DATA_DIR, 'auto-memory-store.json');
22
+ const GRAPH_PATH = path.join(DATA_DIR, 'graph-state.json');
23
+ const RANKED_PATH = path.join(DATA_DIR, 'ranked-context.json');
24
+ const PENDING_PATH = path.join(DATA_DIR, 'pending-insights.jsonl');
25
+ const SESSION_DIR = path.join(process.cwd(), '.claude-flow', 'sessions');
26
+ const SESSION_FILE = path.join(SESSION_DIR, 'current.json');
27
+
28
+ // ── Safety limits (fixes #1530, #1531) ─────────────────────────────────────
29
+ const MAX_DATA_FILE_SIZE = 10 * 1024 * 1024; // 10 MB — skip files larger than this
30
+ const MAX_GRAPH_NODES = 5000; // skip PageRank if graph exceeds this
31
+
32
+ // ── Stop words for trigram matching ──────────────────────────────────────────
33
+
34
+ const STOP_WORDS = new Set([
35
+ 'the', 'a', 'an', 'is', 'are', 'was', 'were', 'be', 'been', 'being',
36
+ 'have', 'has', 'had', 'do', 'does', 'did', 'will', 'would', 'could',
37
+ 'should', 'may', 'might', 'shall', 'can', 'to', 'of', 'in', 'for',
38
+ 'on', 'with', 'at', 'by', 'from', 'as', 'into', 'through', 'during',
39
+ 'before', 'after', 'and', 'but', 'or', 'nor', 'not', 'so', 'yet',
40
+ 'both', 'either', 'neither', 'each', 'every', 'all', 'any', 'few',
41
+ 'more', 'most', 'other', 'some', 'such', 'no', 'only', 'own', 'same',
42
+ 'than', 'too', 'very', 'just', 'because', 'if', 'when', 'which',
43
+ 'who', 'whom', 'this', 'that', 'these', 'those', 'it', 'its',
44
+ ]);
45
+
46
+ // ── Helpers ──────────────────────────────────────────────────────────────────
47
+
48
+ function ensureDataDir() {
49
+ if (!fs.existsSync(DATA_DIR)) fs.mkdirSync(DATA_DIR, { recursive: true });
50
+ }
51
+
52
+ function readJSON(filePath) {
53
+ // Safety: skip files exceeding MAX_DATA_FILE_SIZE (#1531)
54
+ try {
55
+ const stat = fs.statSync(filePath);
56
+ if (stat.size > MAX_DATA_FILE_SIZE) {
57
+ process.stderr.write("[INTELLIGENCE] WARN: Skipping " + path.basename(filePath) + " (" + Math.round(stat.size / 1048576) + "MB exceeds 10MB limit)\n");
58
+ return null;
59
+ }
60
+ } catch { /* file may not exist yet */ }
61
+ try {
62
+ if (fs.existsSync(filePath)) return JSON.parse(fs.readFileSync(filePath, 'utf-8'));
63
+ } catch { /* corrupt file — start fresh */ }
64
+ return null;
65
+ }
66
+
67
+ function writeJSON(filePath, data) {
68
+ ensureDataDir();
69
+ fs.writeFileSync(filePath, JSON.stringify(data, null, 2), 'utf-8');
70
+ }
71
+
72
+ function tokenize(text) {
73
+ if (!text) return [];
74
+ return text.toLowerCase()
75
+ .replace(/[^a-z0-9\s-]/g, ' ')
76
+ .split(/\s+/)
77
+ .filter(w => w.length > 2 && !STOP_WORDS.has(w));
78
+ }
79
+
80
+ function trigrams(words) {
81
+ const t = new Set();
82
+ for (const w of words) {
83
+ for (let i = 0; i <= w.length - 3; i++) t.add(w.slice(i, i + 3));
84
+ }
85
+ return t;
86
+ }
87
+
88
+ function jaccardSimilarity(setA, setB) {
89
+ if (setA.size === 0 && setB.size === 0) return 0;
90
+ let intersection = 0;
91
+ for (const item of setA) { if (setB.has(item)) intersection++; }
92
+ return intersection / (setA.size + setB.size - intersection);
93
+ }
94
+
95
+ // ── Deduplication helper (fixes #1518) ──────────────────────────────────────
96
+
97
+ function deduplicateById(entries) {
98
+ if (!entries || !Array.isArray(entries)) return entries;
99
+ const seen = new Map();
100
+ for (const entry of entries) {
101
+ const id = entry.id || entry.key;
102
+ if (id) {
103
+ seen.set(id, entry);
104
+ } else {
105
+ seen.set(`__no_id_${seen.size}`, entry);
106
+ }
107
+ }
108
+ return Array.from(seen.values());
109
+ }
110
+
111
+ // ADR-095 G6 — content-hash dedup. The April audit measured 5,706 entries
112
+ // in the auto-memory store with only ~20 unique by content; 5,686 dupes
113
+ // were the same MEMORY.md sections imported from sibling project dirs
114
+ // with different IDs. deduplicateById can't catch these (the IDs really
115
+ // are different); we need a content fingerprint.
116
+ //
117
+ // Fast non-cryptographic fingerprint — collisions on 64-bit FNV-1a are
118
+ // vanishingly rare for human prose at the scale of an auto-memory store.
119
+ // Whitespace-normalized so trivially-different formatting doesn't bypass dedup.
120
+ function fingerprintContent(text) {
121
+ if (typeof text !== 'string' || text.length === 0) return '0';
122
+ const norm = text.replace(/\s+/g, ' ').trim().toLowerCase();
123
+ // FNV-1a 64-bit (split into 32-bit halves to stay within Number safe int)
124
+ let h1 = 0x811c9dc5, h2 = 0xcbf29ce4;
125
+ for (let i = 0; i < norm.length; i++) {
126
+ const c = norm.charCodeAt(i);
127
+ h1 ^= c; h1 = Math.imul(h1, 0x01000193) >>> 0;
128
+ h2 ^= c; h2 = Math.imul(h2, 0x100000001b3 & 0xffffffff) >>> 0;
129
+ }
130
+ return `${h1.toString(16)}_${h2.toString(16)}_${norm.length}`;
131
+ }
132
+
133
+ function deduplicateByContent(entries) {
134
+ if (!entries || !Array.isArray(entries)) return entries;
135
+ const seen = new Map();
136
+ for (const entry of entries) {
137
+ const content = entry.content || entry.summary || entry.value || '';
138
+ const fp = fingerprintContent(typeof content === 'string' ? content : JSON.stringify(content));
139
+ if (!seen.has(fp)) {
140
+ seen.set(fp, entry);
141
+ } else {
142
+ // Keep the entry with the higher accessCount or earlier createdAt
143
+ const existing = seen.get(fp);
144
+ const existingAccess = existing.accessCount || 0;
145
+ const candidateAccess = entry.accessCount || 0;
146
+ if (candidateAccess > existingAccess) seen.set(fp, entry);
147
+ }
148
+ }
149
+ return Array.from(seen.values());
150
+ }
151
+
152
+ // ── Session state helpers ────────────────────────────────────────────────────
153
+
154
+ function sessionGet(key) {
155
+ try {
156
+ if (!fs.existsSync(SESSION_FILE)) return null;
157
+ const session = JSON.parse(fs.readFileSync(SESSION_FILE, 'utf-8'));
158
+ return key ? (session.context || {})[key] : session.context;
159
+ } catch { return null; }
160
+ }
161
+
162
+ function sessionSet(key, value) {
163
+ try {
164
+ if (!fs.existsSync(SESSION_DIR)) fs.mkdirSync(SESSION_DIR, { recursive: true });
165
+ let session = {};
166
+ if (fs.existsSync(SESSION_FILE)) {
167
+ session = JSON.parse(fs.readFileSync(SESSION_FILE, 'utf-8'));
168
+ }
169
+ if (!session.context) session.context = {};
170
+ session.context[key] = value;
171
+ session.updatedAt = new Date().toISOString();
172
+ fs.writeFileSync(SESSION_FILE, JSON.stringify(session, null, 2), 'utf-8');
173
+ } catch { /* best effort */ }
174
+ }
175
+
176
+ // ── PageRank ─────────────────────────────────────────────────────────────────
177
+
178
+ function computePageRank(nodes, edges, damping, maxIter) {
179
+ damping = damping || 0.85;
180
+ maxIter = maxIter || 30;
181
+
182
+ const ids = Object.keys(nodes);
183
+ const n = ids.length;
184
+ if (n === 0) return {};
185
+
186
+ // Build adjacency: outgoing edges per node
187
+ const outLinks = {};
188
+ const inLinks = {};
189
+ for (const id of ids) { outLinks[id] = []; inLinks[id] = []; }
190
+ for (const edge of edges) {
191
+ if (outLinks[edge.sourceId]) outLinks[edge.sourceId].push(edge.targetId);
192
+ if (inLinks[edge.targetId]) inLinks[edge.targetId].push(edge.sourceId);
193
+ }
194
+
195
+ // Initialize ranks
196
+ const ranks = {};
197
+ for (const id of ids) ranks[id] = 1 / n;
198
+
199
+ // Power iteration (with dangling node redistribution)
200
+ for (let iter = 0; iter < maxIter; iter++) {
201
+ const newRanks = {};
202
+ let diff = 0;
203
+
204
+ // Collect rank from dangling nodes (no outgoing edges)
205
+ let danglingSum = 0;
206
+ for (const id of ids) {
207
+ if (outLinks[id].length === 0) danglingSum += ranks[id];
208
+ }
209
+
210
+ for (const id of ids) {
211
+ let sum = 0;
212
+ for (const src of inLinks[id]) {
213
+ const outCount = outLinks[src].length;
214
+ if (outCount > 0) sum += ranks[src] / outCount;
215
+ }
216
+ // Dangling rank distributed evenly + teleport
217
+ newRanks[id] = (1 - damping) / n + damping * (sum + danglingSum / n);
218
+ diff += Math.abs(newRanks[id] - ranks[id]);
219
+ }
220
+
221
+ for (const id of ids) ranks[id] = newRanks[id];
222
+ if (diff < 1e-6) break; // converged
223
+ }
224
+
225
+ return ranks;
226
+ }
227
+
228
+ // ── Edge building ────────────────────────────────────────────────────────────
229
+
230
+ function buildEdges(entries) {
231
+ const edges = [];
232
+ const byCategory = {};
233
+
234
+ for (const entry of entries) {
235
+ const cat = entry.category || entry.namespace || 'default';
236
+ if (!byCategory[cat]) byCategory[cat] = [];
237
+ byCategory[cat].push(entry);
238
+ }
239
+
240
+ // Temporal edges: entries from same sourceFile
241
+ const byFile = {};
242
+ for (const entry of entries) {
243
+ const file = (entry.metadata && entry.metadata.sourceFile) || null;
244
+ if (file) {
245
+ if (!byFile[file]) byFile[file] = [];
246
+ byFile[file].push(entry);
247
+ }
248
+ }
249
+ for (const file of Object.keys(byFile)) {
250
+ const group = byFile[file];
251
+ for (let i = 0; i < group.length - 1; i++) {
252
+ edges.push({
253
+ sourceId: group[i].id,
254
+ targetId: group[i + 1].id,
255
+ type: 'temporal',
256
+ weight: 0.5,
257
+ });
258
+ }
259
+ }
260
+
261
+ // Similarity edges within categories (Jaccard > 0.3).
262
+ // ADR-095 G6 perf: hoist the trigram computation outside the inner
263
+ // loop. Previously we re-tokenized + re-trigrammed group[j] for every
264
+ // i — O(n²) extra work for nothing. Now compute once per entry.
265
+ for (const cat of Object.keys(byCategory)) {
266
+ const group = byCategory[cat];
267
+ if (group.length < 2) continue;
268
+
269
+ // Cache trigram sets for every entry in the group.
270
+ const triCache = new Array(group.length);
271
+ for (let i = 0; i < group.length; i++) {
272
+ triCache[i] = trigrams(tokenize(group[i].content || group[i].summary || ''));
273
+ }
274
+
275
+ for (let i = 0; i < group.length; i++) {
276
+ const triA = triCache[i];
277
+ for (let j = i + 1; j < group.length; j++) {
278
+ const sim = jaccardSimilarity(triA, triCache[j]);
279
+ if (sim > 0.3) {
280
+ edges.push({
281
+ sourceId: group[i].id,
282
+ targetId: group[j].id,
283
+ type: 'similar',
284
+ weight: sim,
285
+ });
286
+ }
287
+ }
288
+ }
289
+ }
290
+
291
+ return edges;
292
+ }
293
+
294
+ // ── Bootstrap from MEMORY.md files ───────────────────────────────────────────
295
+
296
+ /**
297
+ * If auto-memory-store.json is empty, bootstrap by parsing MEMORY.md and
298
+ * topic files from the auto-memory directory. This removes the dependency
299
+ * on @claude-flow/memory for the initial seed.
300
+ */
301
+ function bootstrapFromMemoryFiles() {
302
+ const entries = [];
303
+ const cwd = process.cwd();
304
+
305
+ // Search for auto-memory directories
306
+ const candidates = [
307
+ // Claude Code auto-memory (project-scoped)
308
+ path.join(require('os').homedir(), '.claude', 'projects'),
309
+ // Local project memory
310
+ path.join(cwd, '.claude-flow', 'memory'),
311
+ path.join(cwd, '.claude', 'memory'),
312
+ ];
313
+
314
+ // Find MEMORY.md in project-scoped dirs
315
+ for (const base of candidates) {
316
+ if (!fs.existsSync(base)) continue;
317
+
318
+ // For the projects dir, scope to CURRENT project only (not all 51+ dirs)
319
+ if (base.endsWith('projects')) {
320
+ try {
321
+ const projectSlug = cwd.replace(/^\//, '').replace(/\//g, '-');
322
+ const memDir = path.join(base, projectSlug, 'memory');
323
+ if (fs.existsSync(memDir)) {
324
+ parseMemoryDir(memDir, entries);
325
+ }
326
+ } catch { /* skip */ }
327
+ } else if (fs.existsSync(base)) {
328
+ parseMemoryDir(base, entries);
329
+ }
330
+ }
331
+
332
+ return entries;
333
+ }
334
+
335
+ function parseMemoryDir(dir, entries) {
336
+ try {
337
+ const files = fs.readdirSync(dir).filter(f => f.endsWith('.md'));
338
+ for (const file of files) {
339
+ const filePath = path.join(dir, file);
340
+ const content = fs.readFileSync(filePath, 'utf-8');
341
+ if (!content.trim()) continue;
342
+
343
+ // Parse markdown sections as separate entries
344
+ const sections = content.split(/^##?\s+/m).filter(Boolean);
345
+ for (let sIdx = 0; sIdx < sections.length; sIdx++) {
346
+ const section = sections[sIdx];
347
+ const lines = section.trim().split('\n');
348
+ const title = lines[0].trim();
349
+ const body = lines.slice(1).join('\n').trim();
350
+ if (!body || body.length < 10) continue;
351
+
352
+ const id = `mem-${file.replace('.md', '')}-${title.replace(/[^a-z0-9]/gi, '-').toLowerCase().slice(0, 30)}-${sIdx}`;
353
+ entries.push({
354
+ id,
355
+ key: title.toLowerCase().replace(/[^a-z0-9]+/g, '-').slice(0, 50),
356
+ content: body.slice(0, 500),
357
+ summary: title,
358
+ namespace: file === 'MEMORY.md' ? 'core' : file.replace('.md', ''),
359
+ type: 'semantic',
360
+ metadata: { sourceFile: filePath, bootstrapped: true },
361
+ createdAt: Date.now(),
362
+ });
363
+ }
364
+ }
365
+ } catch { /* skip unreadable dirs */ }
366
+ }
367
+
368
+ // ── Exported functions ───────────────────────────────────────────────────────
369
+
370
+ /**
371
+ * init() — Called from session-restore. Budget: <200ms.
372
+ * Reads auto-memory-store.json, builds graph, computes PageRank, writes caches.
373
+ * If store is empty, bootstraps from MEMORY.md files directly.
374
+ */
375
+ function init() {
376
+ ensureDataDir();
377
+
378
+ // Check if graph-state.json is fresh (within 60s of store)
379
+ const graphState = readJSON(GRAPH_PATH);
380
+ let store = readJSON(STORE_PATH);
381
+
382
+ // Bootstrap from MEMORY.md files if store is empty
383
+ if (!store || !Array.isArray(store) || store.length === 0) {
384
+ const bootstrapped = bootstrapFromMemoryFiles();
385
+ if (bootstrapped.length > 0) {
386
+ store = bootstrapped;
387
+ writeJSON(STORE_PATH, store);
388
+ } else {
389
+ return { nodes: 0, edges: 0, message: 'No memory entries to index' };
390
+ }
391
+ }
392
+
393
+ // Deduplicate store entries by ID (fixes #1518 — 194MB → ~79KB)
394
+ let deduped = deduplicateById(store);
395
+ // ADR-095 G6: also dedupe by content fingerprint. The April audit
396
+ // measured 5,706 entries with only ~20 unique by content because the
397
+ // same MEMORY.md sections get imported from sibling project dirs with
398
+ // different IDs. deduplicateById can't catch that; deduplicateByContent
399
+ // can. Cuts the graph from O(n²) over near-identical duplicates down
400
+ // to O(unique²), which is the difference between a 100MB graph-state
401
+ // and a kilobytes-scale one for typical workloads.
402
+ const beforeContentDedup = deduped.length;
403
+ deduped = deduplicateByContent(deduped);
404
+ if (deduped.length < store.length) {
405
+ process.stderr.write(
406
+ `[INTELLIGENCE] Deduped store: ${store.length} -> ${deduped.length} entries ` +
407
+ `(by-id: ${store.length - beforeContentDedup} dropped, by-content: ${beforeContentDedup - deduped.length} dropped)\n`
408
+ );
409
+ writeJSON(STORE_PATH, deduped);
410
+ }
411
+
412
+ // Skip rebuild if graph is fresh and store hasn't changed
413
+ if (graphState && graphState.nodeCount === deduped.length) {
414
+ const age = Date.now() - (graphState.updatedAt || 0);
415
+ if (age < 60000) {
416
+ return {
417
+ nodes: graphState.nodeCount || Object.keys(graphState.nodes || {}).length,
418
+ edges: (graphState.edges || []).length,
419
+ message: 'Graph cache hit',
420
+ };
421
+ }
422
+ }
423
+
424
+ // Build nodes from deduped entries
425
+ const nodes = {};
426
+ for (const entry of deduped) {
427
+ const id = entry.id || entry.key || `entry-${Math.random().toString(36).slice(2, 8)}`;
428
+ nodes[id] = {
429
+ id,
430
+ category: entry.namespace || entry.type || 'default',
431
+ confidence: (entry.metadata && entry.metadata.confidence) || 0.5,
432
+ accessCount: (entry.metadata && entry.metadata.accessCount) || 0,
433
+ createdAt: entry.createdAt || Date.now(),
434
+ };
435
+ // Ensure entry has id for edge building
436
+ entry.id = id;
437
+ }
438
+
439
+ // Build edges
440
+ const edges = buildEdges(deduped);
441
+
442
+ // Compute PageRank (skip if graph too large — #1531)
443
+ const nodeCount = Object.keys(nodes).length;
444
+ let pageRanks = {};
445
+ if (nodeCount > MAX_GRAPH_NODES) {
446
+ process.stderr.write("[INTELLIGENCE] WARN: Graph has " + nodeCount + " nodes (>" + MAX_GRAPH_NODES + "), skipping PageRank\n");
447
+ for (const id of Object.keys(nodes)) pageRanks[id] = 1 / nodeCount;
448
+ } else {
449
+ pageRanks = computePageRank(nodes, edges, 0.85, 30);
450
+ }
451
+
452
+ // Write graph state
453
+ const graph = {
454
+ version: 1,
455
+ updatedAt: Date.now(),
456
+ nodeCount: Object.keys(nodes).length,
457
+ nodes,
458
+ edges,
459
+ pageRanks,
460
+ };
461
+ writeJSON(GRAPH_PATH, graph);
462
+
463
+ // Build ranked context for fast lookup
464
+ const rankedEntries = deduped.map(entry => {
465
+ const id = entry.id;
466
+ const content = entry.content || entry.value || '';
467
+ const summary = entry.summary || entry.key || '';
468
+ const words = tokenize(content + ' ' + summary);
469
+ return {
470
+ id,
471
+ content,
472
+ summary,
473
+ category: entry.namespace || entry.type || 'default',
474
+ confidence: nodes[id] ? nodes[id].confidence : 0.5,
475
+ pageRank: pageRanks[id] || 0,
476
+ accessCount: nodes[id] ? nodes[id].accessCount : 0,
477
+ words,
478
+ };
479
+ }).sort((a, b) => {
480
+ const scoreA = 0.6 * a.pageRank + 0.4 * a.confidence;
481
+ const scoreB = 0.6 * b.pageRank + 0.4 * b.confidence;
482
+ return scoreB - scoreA;
483
+ });
484
+
485
+ const ranked = {
486
+ version: 1,
487
+ computedAt: Date.now(),
488
+ entries: rankedEntries,
489
+ };
490
+ writeJSON(RANKED_PATH, ranked);
491
+
492
+ return {
493
+ nodes: Object.keys(nodes).length,
494
+ edges: edges.length,
495
+ message: 'Graph built and ranked',
496
+ };
497
+ }
498
+
499
+ /**
500
+ * getContext(prompt) — Called from route. Budget: <15ms.
501
+ * Matches prompt to ranked entries, returns top-5 formatted context.
502
+ */
503
+ function getContext(prompt) {
504
+ if (!prompt) return null;
505
+
506
+ const ranked = readJSON(RANKED_PATH);
507
+ if (!ranked || !ranked.entries || ranked.entries.length === 0) return null;
508
+
509
+ const promptWords = tokenize(prompt);
510
+ if (promptWords.length === 0) return null;
511
+ const promptTrigrams = trigrams(promptWords);
512
+
513
+ const ALPHA = 0.6; // content match weight
514
+ const MIN_THRESHOLD = 0.05;
515
+ const TOP_K = 5;
516
+
517
+ // Score each entry
518
+ const scored = [];
519
+ for (const entry of ranked.entries) {
520
+ const entryTrigrams = trigrams(entry.words || []);
521
+ const contentMatch = jaccardSimilarity(promptTrigrams, entryTrigrams);
522
+ const score = ALPHA * contentMatch + (1 - ALPHA) * (entry.pageRank || 0);
523
+ if (score >= MIN_THRESHOLD) {
524
+ scored.push({ ...entry, score });
525
+ }
526
+ }
527
+
528
+ if (scored.length === 0) return null;
529
+
530
+ // Sort by score descending, take top-K
531
+ scored.sort((a, b) => b.score - a.score);
532
+ const topEntries = scored.slice(0, TOP_K);
533
+
534
+ // Boost previously matched patterns (implicit success: user continued working)
535
+ const prevMatched = sessionGet('lastMatchedPatterns');
536
+
537
+ // Store NEW matched IDs in session state for feedback
538
+ const matchedIds = topEntries.map(e => e.id);
539
+ sessionSet('lastMatchedPatterns', matchedIds);
540
+
541
+ // Only boost previous if they differ from current (avoid double-boosting)
542
+ if (prevMatched && Array.isArray(prevMatched)) {
543
+ const newSet = new Set(matchedIds);
544
+ const toBoost = prevMatched.filter(id => !newSet.has(id));
545
+ if (toBoost.length > 0) boostConfidence(toBoost, 0.03);
546
+ }
547
+
548
+ // Format output
549
+ const lines = ['[INTELLIGENCE] Relevant patterns for this task:'];
550
+ for (let i = 0; i < topEntries.length; i++) {
551
+ const e = topEntries[i];
552
+ const display = (e.summary || e.content || '').slice(0, 80);
553
+ const accessed = e.accessCount || 0;
554
+ lines.push(` * (${e.score.toFixed(2)}) ${display} [rank #${i + 1}, ${accessed}x accessed]`);
555
+ }
556
+
557
+ return lines.join('\n');
558
+ }
559
+
560
+ /**
561
+ * recordEdit(file) — Called from post-edit. Budget: <2ms.
562
+ * Appends to pending-insights.jsonl.
563
+ */
564
+ function recordEdit(file) {
565
+ ensureDataDir();
566
+ const entry = JSON.stringify({
567
+ type: 'edit',
568
+ file: file || 'unknown',
569
+ timestamp: Date.now(),
570
+ sessionId: sessionGet('sessionId') || null,
571
+ });
572
+ fs.appendFileSync(PENDING_PATH, entry + '\n', 'utf-8');
573
+ }
574
+
575
+ /**
576
+ * feedback(success) — Called from post-task. Budget: <10ms.
577
+ * Boosts or decays confidence for last-matched patterns.
578
+ */
579
+ function feedback(success) {
580
+ const matchedIds = sessionGet('lastMatchedPatterns');
581
+ if (!matchedIds || !Array.isArray(matchedIds)) return;
582
+
583
+ const amount = success ? 0.05 : -0.02;
584
+ boostConfidence(matchedIds, amount);
585
+ }
586
+
587
+ function boostConfidence(ids, amount) {
588
+ const ranked = readJSON(RANKED_PATH);
589
+ if (!ranked || !ranked.entries) return;
590
+
591
+ let changed = false;
592
+ for (const entry of ranked.entries) {
593
+ if (ids.includes(entry.id)) {
594
+ entry.confidence = Math.max(0, Math.min(1, (entry.confidence || 0.5) + amount));
595
+ entry.accessCount = (entry.accessCount || 0) + 1;
596
+ changed = true;
597
+ }
598
+ }
599
+
600
+ if (changed) writeJSON(RANKED_PATH, ranked);
601
+
602
+ // Also update graph-state confidence
603
+ const graph = readJSON(GRAPH_PATH);
604
+ if (graph && graph.nodes) {
605
+ for (const id of ids) {
606
+ if (graph.nodes[id]) {
607
+ graph.nodes[id].confidence = Math.max(0, Math.min(1, (graph.nodes[id].confidence || 0.5) + amount));
608
+ graph.nodes[id].accessCount = (graph.nodes[id].accessCount || 0) + 1;
609
+ }
610
+ }
611
+ writeJSON(GRAPH_PATH, graph);
612
+ }
613
+ }
614
+
615
+ /**
616
+ * consolidate() — Called from session-end. Budget: <500ms.
617
+ * Processes pending insights, rebuilds edges, recomputes PageRank.
618
+ */
619
+ function consolidate() {
620
+ ensureDataDir();
621
+
622
+ let store = readJSON(STORE_PATH);
623
+ if (!store || !Array.isArray(store)) {
624
+ return { entries: 0, edges: 0, newEntries: 0, message: 'No store to consolidate' };
625
+ }
626
+
627
+ // Deduplicate store entries by ID before processing (fixes #1518)
628
+ const preDedupCount = store.length;
629
+ store = deduplicateById(store);
630
+
631
+ // 1. Process pending insights
632
+ let newEntries = 0;
633
+ if (fs.existsSync(PENDING_PATH)) {
634
+ const lines = fs.readFileSync(PENDING_PATH, 'utf-8').trim().split('\n').filter(Boolean);
635
+ const editCounts = {};
636
+ for (const line of lines) {
637
+ try {
638
+ const insight = JSON.parse(line);
639
+ if (insight.file) {
640
+ editCounts[insight.file] = (editCounts[insight.file] || 0) + 1;
641
+ }
642
+ } catch { /* skip malformed */ }
643
+ }
644
+
645
+ // Create entries for frequently-edited files (3+ edits)
646
+ for (const [file, count] of Object.entries(editCounts)) {
647
+ if (count >= 3) {
648
+ const exists = store.some(e =>
649
+ (e.metadata && e.metadata.sourceFile === file && e.metadata.autoGenerated)
650
+ );
651
+ if (!exists) {
652
+ store.push({
653
+ id: `insight-${Date.now()}-${Math.random().toString(36).slice(2, 6)}`,
654
+ key: `frequent-edit-${path.basename(file)}`,
655
+ content: `File ${file} was edited ${count} times this session — likely a hot path worth monitoring.`,
656
+ summary: `Frequently edited: ${path.basename(file)} (${count}x)`,
657
+ namespace: 'insights',
658
+ type: 'procedural',
659
+ metadata: { sourceFile: file, editCount: count, autoGenerated: true },
660
+ createdAt: Date.now(),
661
+ });
662
+ newEntries++;
663
+ }
664
+ }
665
+ }
666
+
667
+ // Clear pending
668
+ fs.writeFileSync(PENDING_PATH, '', 'utf-8');
669
+ }
670
+
671
+ // 2. Confidence decay for unaccessed entries
672
+ const graph = readJSON(GRAPH_PATH);
673
+ if (graph && graph.nodes) {
674
+ const now = Date.now();
675
+ for (const id of Object.keys(graph.nodes)) {
676
+ const node = graph.nodes[id];
677
+ const hoursSinceCreation = (now - (node.createdAt || now)) / (1000 * 60 * 60);
678
+ if (node.accessCount === 0 && hoursSinceCreation > 24) {
679
+ node.confidence = Math.max(0.05, (node.confidence || 0.5) - 0.005 * Math.floor(hoursSinceCreation / 24));
680
+ }
681
+ }
682
+ }
683
+
684
+ // 3. Rebuild edges with updated store
685
+ for (const entry of store) {
686
+ if (!entry.id) entry.id = `entry-${Math.random().toString(36).slice(2, 8)}`;
687
+ }
688
+ const edges = buildEdges(store);
689
+
690
+ // 4. Build updated nodes
691
+ const nodes = {};
692
+ for (const entry of store) {
693
+ nodes[entry.id] = {
694
+ id: entry.id,
695
+ category: entry.namespace || entry.type || 'default',
696
+ confidence: (graph && graph.nodes && graph.nodes[entry.id])
697
+ ? graph.nodes[entry.id].confidence
698
+ : (entry.metadata && entry.metadata.confidence) || 0.5,
699
+ accessCount: (graph && graph.nodes && graph.nodes[entry.id])
700
+ ? graph.nodes[entry.id].accessCount
701
+ : (entry.metadata && entry.metadata.accessCount) || 0,
702
+ createdAt: entry.createdAt || Date.now(),
703
+ };
704
+ }
705
+
706
+ // 5. Recompute PageRank (skip if graph too large — #1531)
707
+ const nodeCount = Object.keys(nodes).length;
708
+ let pageRanks = {};
709
+ if (nodeCount > MAX_GRAPH_NODES) {
710
+ process.stderr.write("[INTELLIGENCE] WARN: Graph has " + nodeCount + " nodes (>" + MAX_GRAPH_NODES + "), skipping PageRank in consolidate\n");
711
+ for (const id of Object.keys(nodes)) pageRanks[id] = 1 / nodeCount;
712
+ } else {
713
+ pageRanks = computePageRank(nodes, edges, 0.85, 30);
714
+ }
715
+
716
+ // 6. Write updated graph
717
+ writeJSON(GRAPH_PATH, {
718
+ version: 1,
719
+ updatedAt: Date.now(),
720
+ nodeCount: Object.keys(nodes).length,
721
+ nodes,
722
+ edges,
723
+ pageRanks,
724
+ });
725
+
726
+ // 7. Write updated ranked context
727
+ const rankedEntries = store.map(entry => {
728
+ const id = entry.id;
729
+ const content = entry.content || entry.value || '';
730
+ const summary = entry.summary || entry.key || '';
731
+ const words = tokenize(content + ' ' + summary);
732
+ return {
733
+ id,
734
+ content,
735
+ summary,
736
+ category: entry.namespace || entry.type || 'default',
737
+ confidence: nodes[id] ? nodes[id].confidence : 0.5,
738
+ pageRank: pageRanks[id] || 0,
739
+ accessCount: nodes[id] ? nodes[id].accessCount : 0,
740
+ words,
741
+ };
742
+ }).sort((a, b) => {
743
+ const scoreA = 0.6 * a.pageRank + 0.4 * a.confidence;
744
+ const scoreB = 0.6 * b.pageRank + 0.4 * b.confidence;
745
+ return scoreB - scoreA;
746
+ });
747
+
748
+ writeJSON(RANKED_PATH, {
749
+ version: 1,
750
+ computedAt: Date.now(),
751
+ entries: rankedEntries,
752
+ });
753
+
754
+ // 8. Persist updated store (deduped or with new insight entries)
755
+ if (newEntries > 0 || store.length < preDedupCount) writeJSON(STORE_PATH, store);
756
+
757
+ // 9. Save snapshot for delta tracking
758
+ const updatedGraph = readJSON(GRAPH_PATH);
759
+ const updatedRanked = readJSON(RANKED_PATH);
760
+ saveSnapshot(updatedGraph, updatedRanked);
761
+
762
+ return {
763
+ entries: store.length,
764
+ edges: edges.length,
765
+ newEntries,
766
+ message: 'Consolidated',
767
+ };
768
+ }
769
+
770
+ // ── Snapshot for delta tracking ─────────────────────────────────────────────
771
+
772
+ const SNAPSHOT_PATH = path.join(DATA_DIR, 'intelligence-snapshot.json');
773
+
774
+ function saveSnapshot(graph, ranked) {
775
+ const snap = {
776
+ timestamp: Date.now(),
777
+ nodes: graph ? Object.keys(graph.nodes || {}).length : 0,
778
+ edges: graph ? (graph.edges || []).length : 0,
779
+ pageRankSum: 0,
780
+ confidences: [],
781
+ accessCounts: [],
782
+ topPatterns: [],
783
+ };
784
+
785
+ if (graph && graph.pageRanks) {
786
+ for (const v of Object.values(graph.pageRanks)) snap.pageRankSum += v;
787
+ }
788
+ if (graph && graph.nodes) {
789
+ for (const n of Object.values(graph.nodes)) {
790
+ snap.confidences.push(n.confidence || 0.5);
791
+ snap.accessCounts.push(n.accessCount || 0);
792
+ }
793
+ }
794
+ if (ranked && ranked.entries) {
795
+ snap.topPatterns = ranked.entries.slice(0, 10).map(e => ({
796
+ id: e.id,
797
+ summary: (e.summary || '').slice(0, 60),
798
+ confidence: e.confidence || 0.5,
799
+ pageRank: e.pageRank || 0,
800
+ accessCount: e.accessCount || 0,
801
+ }));
802
+ }
803
+
804
+ // Keep history: append to array, cap at 50
805
+ let history = readJSON(SNAPSHOT_PATH);
806
+ if (!Array.isArray(history)) history = [];
807
+ history.push(snap);
808
+ if (history.length > 50) history = history.slice(-50);
809
+ writeJSON(SNAPSHOT_PATH, history);
810
+ }
811
+
812
+ /**
813
+ * stats() — Diagnostic report showing intelligence health and improvement.
814
+ * Can be called as: node intelligence.cjs stats [--json]
815
+ */
816
+ function stats(outputJson) {
817
+ const graph = readJSON(GRAPH_PATH);
818
+ const ranked = readJSON(RANKED_PATH);
819
+ const history = readJSON(SNAPSHOT_PATH) || [];
820
+ const pending = fs.existsSync(PENDING_PATH)
821
+ ? fs.readFileSync(PENDING_PATH, 'utf-8').trim().split('\n').filter(Boolean).length
822
+ : 0;
823
+
824
+ // Current state
825
+ const nodes = graph ? Object.keys(graph.nodes || {}).length : 0;
826
+ const edges = graph ? (graph.edges || []).length : 0;
827
+ const density = nodes > 1 ? (2 * edges) / (nodes * (nodes - 1)) : 0;
828
+
829
+ // Confidence distribution
830
+ const confidences = [];
831
+ const accessCounts = [];
832
+ if (graph && graph.nodes) {
833
+ for (const n of Object.values(graph.nodes)) {
834
+ confidences.push(n.confidence || 0.5);
835
+ accessCounts.push(n.accessCount || 0);
836
+ }
837
+ }
838
+ confidences.sort((a, b) => a - b);
839
+ const confMin = confidences.length ? confidences[0] : 0;
840
+ const confMax = confidences.length ? confidences[confidences.length - 1] : 0;
841
+ const confMean = confidences.length ? confidences.reduce((s, c) => s + c, 0) / confidences.length : 0;
842
+ const confMedian = confidences.length ? confidences[Math.floor(confidences.length / 2)] : 0;
843
+
844
+ // Access stats
845
+ const totalAccess = accessCounts.reduce((s, c) => s + c, 0);
846
+ const accessedCount = accessCounts.filter(c => c > 0).length;
847
+
848
+ // PageRank stats
849
+ let prSum = 0, prMax = 0, prMaxId = '';
850
+ if (graph && graph.pageRanks) {
851
+ for (const [id, pr] of Object.entries(graph.pageRanks)) {
852
+ prSum += pr;
853
+ if (pr > prMax) { prMax = pr; prMaxId = id; }
854
+ }
855
+ }
856
+
857
+ // Top patterns by composite score
858
+ const topPatterns = (ranked && ranked.entries || []).slice(0, 10).map((e, i) => ({
859
+ rank: i + 1,
860
+ summary: (e.summary || '').slice(0, 60),
861
+ confidence: (e.confidence || 0.5).toFixed(3),
862
+ pageRank: (e.pageRank || 0).toFixed(4),
863
+ accessed: e.accessCount || 0,
864
+ score: (0.6 * (e.pageRank || 0) + 0.4 * (e.confidence || 0.5)).toFixed(4),
865
+ }));
866
+
867
+ // Edge type breakdown
868
+ const edgeTypes = {};
869
+ if (graph && graph.edges) {
870
+ for (const e of graph.edges) {
871
+ edgeTypes[e.type || 'unknown'] = (edgeTypes[e.type || 'unknown'] || 0) + 1;
872
+ }
873
+ }
874
+
875
+ // Delta from previous snapshot
876
+ let delta = null;
877
+ if (history.length >= 2) {
878
+ const prev = history[history.length - 2];
879
+ const curr = history[history.length - 1];
880
+ const elapsed = (curr.timestamp - prev.timestamp) / 1000;
881
+ const prevConfMean = prev.confidences.length
882
+ ? prev.confidences.reduce((s, c) => s + c, 0) / prev.confidences.length : 0;
883
+ const currConfMean = curr.confidences.length
884
+ ? curr.confidences.reduce((s, c) => s + c, 0) / curr.confidences.length : 0;
885
+ const prevAccess = prev.accessCounts.reduce((s, c) => s + c, 0);
886
+ const currAccess = curr.accessCounts.reduce((s, c) => s + c, 0);
887
+
888
+ delta = {
889
+ elapsed: elapsed < 3600 ? `${Math.round(elapsed / 60)}m` : `${(elapsed / 3600).toFixed(1)}h`,
890
+ nodes: curr.nodes - prev.nodes,
891
+ edges: curr.edges - prev.edges,
892
+ confidenceMean: currConfMean - prevConfMean,
893
+ totalAccess: currAccess - prevAccess,
894
+ };
895
+ }
896
+
897
+ // Trend over all history
898
+ let trend = null;
899
+ if (history.length >= 3) {
900
+ const first = history[0];
901
+ const last = history[history.length - 1];
902
+ const sessions = history.length;
903
+ const firstConfMean = first.confidences.length
904
+ ? first.confidences.reduce((s, c) => s + c, 0) / first.confidences.length : 0;
905
+ const lastConfMean = last.confidences.length
906
+ ? last.confidences.reduce((s, c) => s + c, 0) / last.confidences.length : 0;
907
+ trend = {
908
+ sessions,
909
+ nodeGrowth: last.nodes - first.nodes,
910
+ edgeGrowth: last.edges - first.edges,
911
+ confidenceDrift: lastConfMean - firstConfMean,
912
+ direction: lastConfMean > firstConfMean ? 'improving' :
913
+ lastConfMean < firstConfMean ? 'declining' : 'stable',
914
+ };
915
+ }
916
+
917
+ const report = {
918
+ graph: { nodes, edges, density: +density.toFixed(4) },
919
+ confidence: {
920
+ min: +confMin.toFixed(3), max: +confMax.toFixed(3),
921
+ mean: +confMean.toFixed(3), median: +confMedian.toFixed(3),
922
+ },
923
+ access: { total: totalAccess, patternsAccessed: accessedCount, patternsNeverAccessed: nodes - accessedCount },
924
+ pageRank: { sum: +prSum.toFixed(4), topNode: prMaxId, topNodeRank: +prMax.toFixed(4) },
925
+ edgeTypes,
926
+ pendingInsights: pending,
927
+ snapshots: history.length,
928
+ topPatterns,
929
+ delta,
930
+ trend,
931
+ };
932
+
933
+ if (outputJson) {
934
+ console.log(JSON.stringify(report, null, 2));
935
+ return report;
936
+ }
937
+
938
+ // Human-readable output
939
+ const bar = '+' + '-'.repeat(62) + '+';
940
+ console.log(bar);
941
+ console.log('|' + ' Intelligence Diagnostics (ADR-050)'.padEnd(62) + '|');
942
+ console.log(bar);
943
+ console.log('');
944
+
945
+ console.log(' Graph');
946
+ console.log(` Nodes: ${nodes}`);
947
+ console.log(` Edges: ${edges} (${Object.entries(edgeTypes).map(([t,c]) => `${c} ${t}`).join(', ') || 'none'})`);
948
+ console.log(` Density: ${(density * 100).toFixed(1)}%`);
949
+ console.log('');
950
+
951
+ console.log(' Confidence');
952
+ console.log(` Min: ${confMin.toFixed(3)}`);
953
+ console.log(` Max: ${confMax.toFixed(3)}`);
954
+ console.log(` Mean: ${confMean.toFixed(3)}`);
955
+ console.log(` Median: ${confMedian.toFixed(3)}`);
956
+ console.log('');
957
+
958
+ console.log(' Access');
959
+ console.log(` Total accesses: ${totalAccess}`);
960
+ console.log(` Patterns used: ${accessedCount}/${nodes}`);
961
+ console.log(` Never accessed: ${nodes - accessedCount}`);
962
+ console.log(` Pending insights: ${pending}`);
963
+ console.log('');
964
+
965
+ console.log(' PageRank');
966
+ console.log(` Sum: ${prSum.toFixed(4)} (should be ~1.0)`);
967
+ console.log(` Top node: ${prMaxId || '(none)'} (${prMax.toFixed(4)})`);
968
+ console.log('');
969
+
970
+ if (topPatterns.length > 0) {
971
+ console.log(' Top Patterns (by composite score)');
972
+ console.log(' ' + '-'.repeat(60));
973
+ for (const p of topPatterns) {
974
+ console.log(` #${p.rank} ${p.summary}`);
975
+ console.log(` conf=${p.confidence} pr=${p.pageRank} score=${p.score} accessed=${p.accessed}x`);
976
+ }
977
+ console.log('');
978
+ }
979
+
980
+ if (delta) {
981
+ console.log(` Last Delta (${delta.elapsed} ago)`);
982
+ const sign = v => v > 0 ? `+${v}` : `${v}`;
983
+ console.log(` Nodes: ${sign(delta.nodes)}`);
984
+ console.log(` Edges: ${sign(delta.edges)}`);
985
+ console.log(` Confidence: ${delta.confidenceMean >= 0 ? '+' : ''}${delta.confidenceMean.toFixed(4)}`);
986
+ console.log(` Accesses: ${sign(delta.totalAccess)}`);
987
+ console.log('');
988
+ }
989
+
990
+ if (trend) {
991
+ console.log(` Trend (${trend.sessions} snapshots)`);
992
+ console.log(` Node growth: ${trend.nodeGrowth >= 0 ? '+' : ''}${trend.nodeGrowth}`);
993
+ console.log(` Edge growth: ${trend.edgeGrowth >= 0 ? '+' : ''}${trend.edgeGrowth}`);
994
+ console.log(` Confidence drift: ${trend.confidenceDrift >= 0 ? '+' : ''}${trend.confidenceDrift.toFixed(4)}`);
995
+ console.log(` Direction: ${trend.direction.toUpperCase()}`);
996
+ console.log('');
997
+ }
998
+
999
+ if (!delta && !trend) {
1000
+ console.log(' No history yet — run more sessions to see deltas and trends.');
1001
+ console.log('');
1002
+ }
1003
+
1004
+ console.log(bar);
1005
+ return report;
1006
+ }
1007
+
1008
+ module.exports = { init, getContext, recordEdit, feedback, consolidate, stats };
1009
+
1010
+ // ── CLI entrypoint ──────────────────────────────────────────────────────────
1011
+ if (require.main === module) {
1012
+ const cmd = process.argv[2];
1013
+ const jsonFlag = process.argv.includes('--json');
1014
+
1015
+ const cmds = {
1016
+ init: () => { const r = init(); console.log(JSON.stringify(r)); },
1017
+ stats: () => { stats(jsonFlag); },
1018
+ consolidate: () => { const r = consolidate(); console.log(JSON.stringify(r)); },
1019
+ };
1020
+
1021
+ if (cmd && cmds[cmd]) {
1022
+ cmds[cmd]();
1023
+ } else {
1024
+ console.log('Usage: intelligence.cjs <stats|init|consolidate> [--json]');
1025
+ console.log('');
1026
+ console.log(' stats Show intelligence diagnostics and trends');
1027
+ console.log(' stats --json Output as JSON for programmatic use');
1028
+ console.log(' init Build graph and rank entries');
1029
+ console.log(' consolidate Process pending insights and recompute');
1030
+ }
1031
+ }