burhan-mop 0.1.0

package/.claude-flow/CAPABILITIES.md

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+# RuFlo V3 - Complete Capabilities Reference
+> Generated: 2026-06-11T03:01:05.205Z
+> Full documentation: https://github.com/ruvnet/claude-flow
+
+## 📋 Table of Contents
+
+1. [Overview](#overview)
+2. [Swarm Orchestration](#swarm-orchestration)
+3. [Available Agents (60+)](#available-agents)
+4. [CLI Commands (26 Commands, 140+ Subcommands)](#cli-commands)
+5. [Hooks System (27 Hooks + 12 Workers)](#hooks-system)
+6. [Memory & Intelligence (RuVector)](#memory--intelligence)
+7. [Hive-Mind Consensus](#hive-mind-consensus)
+8. [Performance Targets](#performance-targets)
+9. [Integration Ecosystem](#integration-ecosystem)
+
+---
+
+## Overview
+
+RuFlo V3 is a domain-driven design architecture for multi-agent AI coordination with:
+
+- **15-Agent Swarm Coordination** with hierarchical and mesh topologies
+- **HNSW Vector Search** - 150x-12,500x faster pattern retrieval
+- **SONA Neural Learning** - Self-optimizing with <0.05ms adaptation
+- **Byzantine Fault Tolerance** - Queen-led consensus mechanisms
+- **MCP Server Integration** - Model Context Protocol support
+
+### Current Configuration
+| Setting | Value |
+|---------|-------|
+| Topology | adaptive |
+| Max Agents | 50 |
+| Memory Backend | hybrid |
+| HNSW Indexing | Enabled |
+| Neural Learning | Enabled |
+| LearningBridge | Enabled (SONA + ReasoningBank) |
+| Knowledge Graph | Enabled (PageRank + Communities) |
+| Agent Scopes | Enabled (project/local/user) |
+
+---
+
+## Swarm Orchestration
+
+### Topologies
+| Topology | Description | Best For |
+|----------|-------------|----------|
+| `hierarchical` | Queen controls workers directly | Anti-drift, tight control |
+| `mesh` | Fully connected peer network | Distributed tasks |
+| `hierarchical-mesh` | V3 hybrid (recommended) | 10+ agents |
+| `ring` | Circular communication | Sequential workflows |
+| `star` | Central coordinator | Simple coordination |
+| `adaptive` | Dynamic based on load | Variable workloads |
+
+### Strategies
+- `balanced` - Even distribution across agents
+- `specialized` - Clear roles, no overlap (anti-drift)
+- `adaptive` - Dynamic task routing
+
+### Quick Commands
+```bash
+# Initialize swarm
+npx @claude-flow/cli@latest swarm init --topology hierarchical --max-agents 8 --strategy specialized
+
+# Check status
+npx @claude-flow/cli@latest swarm status
+
+# Monitor activity
+npx @claude-flow/cli@latest swarm monitor
+```
+
+---
+
+## Available Agents
+
+### Core Development (5)
+`coder`, `reviewer`, `tester`, `planner`, `researcher`
+
+### V3 Specialized (4)
+`security-architect`, `security-auditor`, `memory-specialist`, `performance-engineer`
+
+### Swarm Coordination (5)
+`hierarchical-coordinator`, `mesh-coordinator`, `adaptive-coordinator`, `collective-intelligence-coordinator`, `swarm-memory-manager`
+
+### Consensus & Distributed (7)
+`byzantine-coordinator`, `raft-manager`, `gossip-coordinator`, `consensus-builder`, `crdt-synchronizer`, `quorum-manager`, `security-manager`
+
+### Performance & Optimization (5)
+`perf-analyzer`, `performance-benchmarker`, `task-orchestrator`, `memory-coordinator`, `smart-agent`
+
+### GitHub & Repository (9)
+`github-modes`, `pr-manager`, `code-review-swarm`, `issue-tracker`, `release-manager`, `workflow-automation`, `project-board-sync`, `repo-architect`, `multi-repo-swarm`
+
+### SPARC Methodology (6)
+`sparc-coord`, `sparc-coder`, `specification`, `pseudocode`, `architecture`, `refinement`
+
+### Specialized Development (8)
+`backend-dev`, `mobile-dev`, `ml-developer`, `cicd-engineer`, `api-docs`, `system-architect`, `code-analyzer`, `base-template-generator`
+
+### Testing & Validation (2)
+`tdd-london-swarm`, `production-validator`
+
+### Agent Routing by Task
+| Task Type | Recommended Agents | Topology |
+|-----------|-------------------|----------|
+| Bug Fix | researcher, coder, tester | mesh |
+| New Feature | coordinator, architect, coder, tester, reviewer | hierarchical |
+| Refactoring | architect, coder, reviewer | mesh |
+| Performance | researcher, perf-engineer, coder | hierarchical |
+| Security | security-architect, auditor, reviewer | hierarchical |
+| Docs | researcher, api-docs | mesh |
+
+---
+
+## CLI Commands
+
+### Core Commands (12)
+| Command | Subcommands | Description |
+|---------|-------------|-------------|
+| `init` | 4 | Project initialization |
+| `agent` | 8 | Agent lifecycle management |
+| `swarm` | 6 | Multi-agent coordination |
+| `memory` | 11 | AgentDB with HNSW search |
+| `mcp` | 9 | MCP server management |
+| `task` | 6 | Task assignment |
+| `session` | 7 | Session persistence |
+| `config` | 7 | Configuration |
+| `status` | 3 | System monitoring |
+| `workflow` | 6 | Workflow templates |
+| `hooks` | 17 | Self-learning hooks |
+| `hive-mind` | 6 | Consensus coordination |
+
+### Advanced Commands (14)
+| Command | Subcommands | Description |
+|---------|-------------|-------------|
+| `daemon` | 5 | Background workers |
+| `neural` | 5 | Pattern training |
+| `security` | 6 | Security scanning |
+| `performance` | 5 | Profiling & benchmarks |
+| `providers` | 5 | AI provider config |
+| `plugins` | 5 | Plugin management |
+| `deployment` | 5 | Deploy management |
+| `embeddings` | 4 | Vector embeddings |
+| `claims` | 4 | Authorization |
+| `migrate` | 5 | V2→V3 migration |
+| `process` | 4 | Process management |
+| `doctor` | 1 | Health diagnostics |
+| `completions` | 4 | Shell completions |
+
+### Example Commands
+```bash
+# Initialize
+npx @claude-flow/cli@latest init --wizard
+
+# Spawn agent
+npx @claude-flow/cli@latest agent spawn -t coder --name my-coder
+
+# Memory operations
+npx @claude-flow/cli@latest memory store --key "pattern" --value "data" --namespace patterns
+npx @claude-flow/cli@latest memory search --query "authentication"
+
+# Diagnostics
+npx @claude-flow/cli@latest doctor --fix
+```
+
+---
+
+## Hooks System
+
+### 27 Available Hooks
+
+#### Core Hooks (6)
+| Hook | Description |
+|------|-------------|
+| `pre-edit` | Context before file edits |
+| `post-edit` | Record edit outcomes |
+| `pre-command` | Risk assessment |
+| `post-command` | Command metrics |
+| `pre-task` | Task start + agent suggestions |
+| `post-task` | Task completion learning |
+
+#### Session Hooks (4)
+| Hook | Description |
+|------|-------------|
+| `session-start` | Start/restore session |
+| `session-end` | Persist state |
+| `session-restore` | Restore previous |
+| `notify` | Cross-agent notifications |
+
+#### Intelligence Hooks (5)
+| Hook | Description |
+|------|-------------|
+| `route` | Optimal agent routing |
+| `explain` | Routing decisions |
+| `pretrain` | Bootstrap intelligence |
+| `build-agents` | Generate configs |
+| `transfer` | Pattern transfer |
+
+#### Coverage Hooks (3)
+| Hook | Description |
+|------|-------------|
+| `coverage-route` | Coverage-based routing |
+| `coverage-suggest` | Improvement suggestions |
+| `coverage-gaps` | Gap analysis |
+
+### 12 Background Workers
+| Worker | Priority | Purpose |
+|--------|----------|---------|
+| `ultralearn` | normal | Deep knowledge |
+| `optimize` | high | Performance |
+| `consolidate` | low | Memory consolidation |
+| `predict` | normal | Predictive preload |
+| `audit` | critical | Security |
+| `map` | normal | Codebase mapping |
+| `preload` | low | Resource preload |
+| `deepdive` | normal | Deep analysis |
+| `document` | normal | Auto-docs |
+| `refactor` | normal | Suggestions |
+| `benchmark` | normal | Benchmarking |
+| `testgaps` | normal | Coverage gaps |
+
+---
+
+## Memory & Intelligence
+
+### RuVector Intelligence System
+- **SONA**: Self-Optimizing Neural Architecture (<0.05ms)
+- **MoE**: Mixture of Experts routing
+- **HNSW**: 150x-12,500x faster search
+- **EWC++**: Prevents catastrophic forgetting
+- **Flash Attention**: 2.49x-7.47x speedup
+- **Int8 Quantization**: 3.92x memory reduction
+
+### 4-Step Intelligence Pipeline
+1. **RETRIEVE** - HNSW pattern search
+2. **JUDGE** - Success/failure verdicts
+3. **DISTILL** - LoRA learning extraction
+4. **CONSOLIDATE** - EWC++ preservation
+
+### Self-Learning Memory (ADR-049)
+
+| Component | Status | Description |
+|-----------|--------|-------------|
+| **LearningBridge** | ✅ Enabled | Connects insights to SONA/ReasoningBank neural pipeline |
+| **MemoryGraph** | ✅ Enabled | PageRank knowledge graph + community detection |
+| **AgentMemoryScope** | ✅ Enabled | 3-scope agent memory (project/local/user) |
+
+**LearningBridge** - Insights trigger learning trajectories. Confidence evolves: +0.03 on access, -0.005/hour decay. Consolidation runs the JUDGE/DISTILL/CONSOLIDATE pipeline.
+
+**MemoryGraph** - Builds a knowledge graph from entry references. PageRank identifies influential insights. Communities group related knowledge. Graph-aware ranking blends vector + structural scores.
+
+**AgentMemoryScope** - Maps Claude Code 3-scope directories:
+- `project`: `<gitRoot>/.claude/agent-memory/<agent>/`
+- `local`: `<gitRoot>/.claude/agent-memory-local/<agent>/`
+- `user`: `~/.claude/agent-memory/<agent>/`
+
+High-confidence insights (>0.8) can transfer between agents.
+
+### Memory Commands
+```bash
+# Store pattern
+npx @claude-flow/cli@latest memory store --key "name" --value "data" --namespace patterns
+
+# Semantic search
+npx @claude-flow/cli@latest memory search --query "authentication"
+
+# List entries
+npx @claude-flow/cli@latest memory list --namespace patterns
+
+# Initialize database
+npx @claude-flow/cli@latest memory init --force
+```
+
+---
+
+## Hive-Mind Consensus
+
+### Queen Types
+| Type | Role |
+|------|------|
+| Strategic Queen | Long-term planning |
+| Tactical Queen | Execution coordination |
+| Adaptive Queen | Dynamic optimization |
+
+### Worker Types (8)
+`researcher`, `coder`, `analyst`, `tester`, `architect`, `reviewer`, `optimizer`, `documenter`
+
+### Consensus Mechanisms
+| Mechanism | Fault Tolerance | Use Case |
+|-----------|-----------------|----------|
+| `byzantine` | f < n/3 faulty | Adversarial |
+| `raft` | f < n/2 failed | Leader-based |
+| `gossip` | Eventually consistent | Large scale |
+| `crdt` | Conflict-free | Distributed |
+| `quorum` | Configurable | Flexible |
+
+### Hive-Mind Commands
+```bash
+# Initialize
+npx @claude-flow/cli@latest hive-mind init --queen-type strategic
+
+# Status
+npx @claude-flow/cli@latest hive-mind status
+
+# Spawn workers
+npx @claude-flow/cli@latest hive-mind spawn --count 5 --type worker
+
+# Consensus
+npx @claude-flow/cli@latest hive-mind consensus --propose "task"
+```
+
+---
+
+## Performance Targets
+
+| Metric | Target | Status |
+|--------|--------|--------|
+| HNSW Search | 150x-12,500x faster | ✅ Implemented |
+| Memory Reduction | 50-75% | ✅ Implemented (3.92x) |
+| SONA Integration | Pattern learning | ✅ Implemented |
+| Flash Attention | 2.49x-7.47x | 🔄 In Progress |
+| MCP Response | <100ms | ✅ Achieved |
+| CLI Startup | <500ms | ✅ Achieved |
+| SONA Adaptation | <0.05ms | 🔄 In Progress |
+| Graph Build (1k) | <200ms | ✅ 2.78ms (71.9x headroom) |
+| PageRank (1k) | <100ms | ✅ 12.21ms (8.2x headroom) |
+| Insight Recording | <5ms/each | ✅ 0.12ms (41x headroom) |
+| Consolidation | <500ms | ✅ 0.26ms (1,955x headroom) |
+| Knowledge Transfer | <100ms | ✅ 1.25ms (80x headroom) |
+
+---
+
+## Integration Ecosystem
+
+### Integrated Packages
+| Package | Version | Purpose |
+|---------|---------|---------|
+| agentic-flow | 3.0.0-alpha.1 | Core coordination + ReasoningBank + Router |
+| agentdb | 3.0.0-alpha.10 | Vector database + 8 controllers |
+| @ruvector/attention | 0.1.3 | Flash attention |
+| @ruvector/sona | 0.1.5 | Neural learning |
+
+### Optional Integrations
+| Package | Command |
+|---------|---------|
+| ruv-swarm | `npx ruv-swarm mcp start` |
+| flow-nexus | `npx flow-nexus@latest mcp start` |
+| agentic-jujutsu | `npx agentic-jujutsu@latest` |
+
+### MCP Server Setup
+```bash
+# Add Ruflo MCP
+claude mcp add ruflo -- npx -y ruflo@latest
+
+# Optional servers
+claude mcp add ruv-swarm -- npx -y ruv-swarm mcp start
+claude mcp add flow-nexus -- npx -y flow-nexus@latest mcp start
+```
+
+---
+
+## Quick Reference
+
+### Essential Commands
+```bash
+# Setup
+npx ruflo@latest init --wizard
+npx ruflo@latest daemon start
+npx ruflo@latest doctor --fix
+
+# Swarm
+npx ruflo@latest swarm init --topology hierarchical --max-agents 8
+npx ruflo@latest swarm status
+
+# Agents
+npx ruflo@latest agent spawn -t coder
+npx ruflo@latest agent list
+
+# Memory
+npx ruflo@latest memory search --query "patterns"
+
+# Hooks
+npx ruflo@latest hooks pre-task --description "task"
+npx ruflo@latest hooks worker dispatch --trigger optimize
+```
+
+### File Structure
+```
+.claude-flow/
+├── config.yaml      # Runtime configuration
+├── CAPABILITIES.md  # This file
+├── data/            # Memory storage
+├── logs/            # Operation logs
+├── sessions/        # Session state
+├── hooks/           # Custom hooks
+├── agents/          # Agent configs
+└── workflows/       # Workflow templates
+```
+
+---
+
+**Full Documentation**: https://github.com/ruvnet/claude-flow
+**Issues**: https://github.com/ruvnet/claude-flow/issues

package/.claude-flow/config.yaml

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+# RuFlo V3 Runtime Configuration
+# Generated: 2026-06-11T03:01:05.201Z
+
+version: "3.0.0"
+
+swarm:
+  topology: adaptive
+  maxAgents: 50
+  autoScale: true
+  coordinationStrategy: consensus
+
+memory:
+  backend: hybrid
+  enableHNSW: true
+  persistPath: .claude-flow/data
+  cacheSize: 100
+  # ADR-049: Self-Learning Memory
+  learningBridge:
+    enabled: true
+    sonaMode: balanced
+    confidenceDecayRate: 0.005
+    accessBoostAmount: 0.03
+    consolidationThreshold: 10
+  memoryGraph:
+    enabled: true
+    pageRankDamping: 0.85
+    maxNodes: 5000
+    similarityThreshold: 0.8
+  agentScopes:
+    enabled: true
+    defaultScope: project
+
+neural:
+  enabled: true
+  modelPath: .claude-flow/neural
+
+hooks:
+  enabled: true
+  autoExecute: true
+
+mcp:
+  autoStart: false
+  port: 3000

package/.claude-flow/metrics/learning.json

@@ -0,0 +1,17 @@
+{
+  "initialized": "2026-06-11T03:01:05.214Z",
+  "routing": {
+    "accuracy": 0,
+    "decisions": 0
+  },
+  "patterns": {
+    "shortTerm": 0,
+    "longTerm": 0,
+    "quality": 0
+  },
+  "sessions": {
+    "total": 0,
+    "current": null
+  },
+  "_note": "Intelligence grows as you use Ruflo"
+}

package/.claude-flow/metrics/swarm-activity.json

@@ -0,0 +1,18 @@
+{
+  "timestamp": "2026-06-11T03:01:05.211Z",
+  "processes": {
+    "agentic_flow": 0,
+    "mcp_server": 0,
+    "estimated_agents": 0
+  },
+  "swarm": {
+    "active": false,
+    "agent_count": 0,
+    "coordination_active": false
+  },
+  "integration": {
+    "agentic_flow_active": false,
+    "mcp_active": false
+  },
+  "_initialized": true
+}

package/.claude-flow/metrics/v3-progress.json

@@ -0,0 +1,26 @@
+{
+  "version": "3.0.0",
+  "initialized": "2026-06-11T03:01:05.209Z",
+  "domains": {
+    "completed": 0,
+    "total": 5,
+    "status": "INITIALIZING"
+  },
+  "ddd": {
+    "progress": 0,
+    "modules": 0,
+    "totalFiles": 0,
+    "totalLines": 0
+  },
+  "swarm": {
+    "activeAgents": 0,
+    "maxAgents": 50,
+    "topology": "adaptive"
+  },
+  "learning": {
+    "status": "READY",
+    "patternsLearned": 0,
+    "sessionsCompleted": 0
+  },
+  "_note": "Metrics will update as you use Ruflo. Run: npx ruflo@latest daemon start"
+}

package/.claude-flow/security/audit-status.json

@@ -0,0 +1,8 @@
+{
+  "initialized": "2026-06-11T03:01:05.215Z",
+  "status": "PENDING",
+  "cvesFixed": 0,
+  "totalCves": 3,
+  "lastScan": null,
+  "_note": "Run: npx @claude-flow/cli@latest security scan"
+}

package/.codex/config.toml

@@ -0,0 +1,39 @@
+# Project-local Codex defaults for MemoryOfPlanet Core.
+
+project_doc_fallback_filenames = ["GEMINI.md", "CLAUDE.md"]
+project_doc_max_bytes = 65536
+
+[mcp_servers.ruflo]
+enabled = true
+command = "cmd"
+args = ["/c", "npx", "-y", "ruflo@latest", "mcp", "start"]
+startup_timeout_sec = 20
+tool_timeout_sec = 60
+
+[mcp_servers.ruflo.env]
+npm_config_update_notifier = "false"
+CLAUDE_FLOW_MODE = "v3"
+CLAUDE_FLOW_HOOKS_ENABLED = "true"
+CLAUDE_FLOW_TOPOLOGY = "adaptive"
+CLAUDE_FLOW_MAX_AGENTS = "50"
+CLAUDE_FLOW_MEMORY_BACKEND = "hybrid"
+
+[mcp_servers."ruv-swarm"]
+enabled = false
+command = "cmd"
+args = ["/c", "npx", "-y", "ruv-swarm", "mcp", "start"]
+startup_timeout_sec = 20
+tool_timeout_sec = 60
+
+[mcp_servers."ruv-swarm".env]
+npm_config_update_notifier = "false"
+
+[mcp_servers."flow-nexus"]
+enabled = false
+command = "cmd"
+args = ["/c", "npx", "-y", "flow-nexus@latest", "mcp", "start"]
+startup_timeout_sec = 20
+tool_timeout_sec = 60
+
+[mcp_servers."flow-nexus".env]
+npm_config_update_notifier = "false"

package/.gemini/settings.json

@@ -0,0 +1,49 @@
+{
+  "context": {
+    "fileName": [
+      "AGENTS.md",
+      "GEMINI.md",
+      "CLAUDE.md"
+    ]
+  },
+  "mcpServers": {
+    "ruflo": {
+      "command": "cmd",
+      "args": [
+        "/c",
+        "npx",
+        "-y",
+        "ruflo@latest",
+        "mcp",
+        "start"
+      ],
+      "env": {
+        "npm_config_update_notifier": "false",
+        "CLAUDE_FLOW_MODE": "v3",
+        "CLAUDE_FLOW_HOOKS_ENABLED": "true",
+        "CLAUDE_FLOW_TOPOLOGY": "adaptive",
+        "CLAUDE_FLOW_MAX_AGENTS": "50",
+        "CLAUDE_FLOW_MEMORY_BACKEND": "hybrid"
+      },
+      "timeout": 30000,
+      "trust": false
+    },
+    "ruv-swarm": {
+      "command": "cmd",
+      "args": [
+        "/c",
+        "npx",
+        "-y",
+        "ruv-swarm",
+        "mcp",
+        "start"
+      ],
+      "env": {
+        "npm_config_update_notifier": "false"
+      },
+      "timeout": 30000,
+      "trust": false
+    }
+  }
+}
+

package/.mcp.json

@@ -0,0 +1,55 @@
+{
+  "mcpServers": {
+    "claude-flow": {
+      "command": "cmd",
+      "args": [
+        "/c",
+        "npx",
+        "-y",
+        "ruflo@latest",
+        "mcp",
+        "start"
+      ],
+      "env": {
+        "npm_config_update_notifier": "false",
+        "CLAUDE_FLOW_MODE": "v3",
+        "CLAUDE_FLOW_HOOKS_ENABLED": "true",
+        "CLAUDE_FLOW_TOPOLOGY": "adaptive",
+        "CLAUDE_FLOW_MAX_AGENTS": "50",
+        "CLAUDE_FLOW_MEMORY_BACKEND": "hybrid"
+      },
+      "autoStart": false
+    },
+    "ruv-swarm": {
+      "command": "cmd",
+      "args": [
+        "/c",
+        "npx",
+        "-y",
+        "ruv-swarm",
+        "mcp",
+        "start"
+      ],
+      "env": {
+        "npm_config_update_notifier": "false"
+      },
+      "optional": true
+    },
+    "flow-nexus": {
+      "command": "cmd",
+      "args": [
+        "/c",
+        "npx",
+        "-y",
+        "flow-nexus@latest",
+        "mcp",
+        "start"
+      ],
+      "env": {
+        "npm_config_update_notifier": "false"
+      },
+      "optional": true,
+      "requiresAuth": true
+    }
+  }
+}