atlas-pipeline-mcp 1.0.17 → 1.0.18

package/dist/tools/think.js

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+/**
+ * Atlas Server - Advanced Sequential Thinking Tool
+ *
+ * Enhanced reasoning capabilities beyond basic sequential thinking:
+ * - Dynamic thought branching with merge support
+ * - Hypothesis generation and verification
+ * - Confidence scoring and uncertainty tracking
+ * - Automatic insight extraction
+ * - Deadend detection and smart backtracking
+ * - AI-enhanced reasoning when LLM available
+ * - Thought summarization and compression
+ * - Memory of key conclusions
+ */
+import { getActiveProvider, isNoLLMMode } from '../providers/index.js';
+import { logger } from '../utils.js';
+// ============================================================================
+// Thinking Server Class
+// ============================================================================
+export class AdvancedThinkingServer {
+    sessions = new Map();
+    currentSession = null;
+    constructor() {
+        logger.debug('AdvancedThinkingServer initialized');
+    }
+    /**
+     * Start a new thinking session
+     */
+    startSession(problem, sessionId) {
+        const id = sessionId ?? `session-${Date.now()}`;
+        const session = {
+            id,
+            startTime: new Date().toISOString(),
+            problem,
+            thoughts: [],
+            branches: {},
+            currentBranch: null,
+            hypotheses: [],
+            keyInsights: [],
+            deadEnds: [],
+            overallConfidence: 0,
+        };
+        this.sessions.set(id, session);
+        this.currentSession = session;
+        return id;
+    }
+    /**
+     * Process a thought and return the result
+     */
+    async processThought(input) {
+        // Get or create session
+        if (!this.currentSession) {
+            this.startSession(input.problemContext ?? 'General problem solving');
+        }
+        const session = this.currentSession;
+        // Auto-adjust totalThoughts if needed
+        if (input.thoughtNumber > input.totalThoughts) {
+            input.totalThoughts = input.thoughtNumber;
+        }
+        // Create thought record
+        const thought = {
+            ...input,
+            timestamp: new Date().toISOString(),
+            extractedInsights: [],
+            confidenceHistory: [...(session.thoughts[session.thoughts.length - 1]?.confidenceHistory ?? []), input.confidence ?? 0.5],
+        };
+        // Extract insights from thought
+        thought.extractedInsights = this.extractInsights(input.thought);
+        // Handle branching
+        if (input.branchFromThought && input.branchId) {
+            this.handleBranching(session, thought, input.branchId, input.branchFromThought);
+        }
+        // Handle branch merging
+        if (input.mergeBranches && input.mergeBranches.length > 0) {
+            this.handleMerge(session, thought, input.mergeBranches);
+        }
+        // Handle hypothesis
+        if (input.thoughtType === 'hypothesis' && input.hypothesis) {
+            this.addHypothesis(session, input.hypothesis, input.thoughtNumber);
+        }
+        // Handle verification
+        if (input.thoughtType === 'verification' && input.verificationResult) {
+            this.updateHypothesisStatus(session, input.verificationResult, input.thoughtNumber);
+        }
+        // Handle dead end
+        if (input.isDeadEnd) {
+            this.recordDeadEnd(session, thought);
+        }
+        // Record key insight
+        if (input.keyInsight) {
+            session.keyInsights.push(input.keyInsight);
+        }
+        // Add thought to history
+        session.thoughts.push(thought);
+        // Update confidence
+        session.overallConfidence = this.calculateOverallConfidence(session);
+        // Get AI enhancement if available
+        let aiSuggestion;
+        let recommendedNextStep;
+        if (!isNoLLMMode() && input.nextThoughtNeeded) {
+            try {
+                const enhancement = await this.getAIEnhancement(session, thought);
+                aiSuggestion = enhancement.suggestion;
+                recommendedNextStep = enhancement.nextStep;
+                thought.aiEnhancement = enhancement.suggestion;
+            }
+            catch (error) {
+                logger.warn({ error }, 'AI enhancement failed');
+            }
+        }
+        // Generate conclusion if this is the final thought
+        let conclusion;
+        if (!input.nextThoughtNeeded) {
+            conclusion = this.generateConclusion(session);
+            session.conclusion = conclusion;
+        }
+        // Build result
+        const result = {
+            thoughtNumber: input.thoughtNumber,
+            totalThoughts: input.totalThoughts,
+            nextThoughtNeeded: input.nextThoughtNeeded,
+            currentBranch: session.currentBranch,
+            branches: Object.keys(session.branches),
+            thoughtHistoryLength: session.thoughts.length,
+            currentConfidence: session.overallConfidence,
+            activeHypotheses: session.hypotheses.filter(h => h.status === 'testing' || h.status === 'proposed').length,
+            keyInsightsCount: session.keyInsights.length,
+            deadEndsEncountered: session.deadEnds.length,
+            aiSuggestion,
+            recommendedNextStep,
+            progressSummary: this.generateProgressSummary(session, input.thoughtNumber),
+            conclusion,
+        };
+        return result;
+    }
+    /**
+     * Extract insights from thought text
+     */
+    extractInsights(thought) {
+        const insights = [];
+        // Look for key phrases that indicate insights
+        const insightPatterns = [
+            /(?:i realize|i notice|key point|important|crucial|this means|therefore|thus|hence|conclusion|insight)/gi,
+            /(?:the pattern is|this suggests|this indicates|this shows)/gi,
+        ];
+        const sentences = thought.split(/[.!?]+/).filter(s => s.trim());
+        for (const sentence of sentences) {
+            for (const pattern of insightPatterns) {
+                if (pattern.test(sentence)) {
+                    insights.push(sentence.trim());
+                    break;
+                }
+            }
+        }
+        return insights;
+    }
+    /**
+     * Handle branching logic
+     */
+    handleBranching(session, thought, branchId, fromThought) {
+        if (!session.branches[branchId]) {
+            session.branches[branchId] = {
+                id: branchId,
+                parentThought: fromThought,
+                thoughts: [],
+                status: 'active',
+            };
+        }
+        session.branches[branchId].thoughts.push(thought);
+        session.currentBranch = branchId;
+    }
+    /**
+     * Handle merging of branches
+     */
+    handleMerge(session, thought, branchIds) {
+        const mergedInsights = [];
+        for (const branchId of branchIds) {
+            const branch = session.branches[branchId];
+            if (branch) {
+                branch.status = 'merged';
+                // Collect insights from merged branches
+                for (const t of branch.thoughts) {
+                    mergedInsights.push(...t.extractedInsights);
+                }
+                if (branch.conclusion) {
+                    mergedInsights.push(branch.conclusion);
+                }
+            }
+        }
+        // Add merged insights to current thought
+        thought.extractedInsights.push(...mergedInsights);
+        session.currentBranch = null;
+    }
+    /**
+     * Add a new hypothesis
+     */
+    addHypothesis(session, statement, thoughtNumber) {
+        session.hypotheses.push({
+            id: `hyp-${session.hypotheses.length + 1}`,
+            statement,
+            proposedAt: thoughtNumber,
+            status: 'proposed',
+            evidence: [],
+            confidence: 0.5,
+        });
+    }
+    /**
+     * Update hypothesis status based on verification
+     */
+    updateHypothesisStatus(session, result, thoughtNumber) {
+        // Update the most recent hypothesis being tested
+        const testingHypothesis = [...session.hypotheses].reverse().find(h => h.status === 'testing' || h.status === 'proposed');
+        if (testingHypothesis) {
+            switch (result) {
+                case 'confirmed':
+                    testingHypothesis.status = 'confirmed';
+                    testingHypothesis.confidence = 0.9;
+                    break;
+                case 'refuted':
+                    testingHypothesis.status = 'refuted';
+                    testingHypothesis.confidence = 0.1;
+                    break;
+                case 'partial':
+                    testingHypothesis.status = 'partial';
+                    testingHypothesis.confidence = 0.6;
+                    break;
+                default:
+                    testingHypothesis.confidence = 0.5;
+            }
+            testingHypothesis.evidence.push({
+                thoughtNumber,
+                type: result === 'confirmed' ? 'supports' : result === 'refuted' ? 'refutes' : 'neutral',
+                description: `Verification at thought ${thoughtNumber}`,
+                weight: 1,
+            });
+        }
+    }
+    /**
+     * Record a dead end
+     */
+    recordDeadEnd(session, thought) {
+        // Find the best point to backtrack to
+        const backtrackTo = this.findBacktrackPoint(session, thought.thoughtNumber);
+        session.deadEnds.push({
+            thoughtNumber: thought.thoughtNumber,
+            reason: thought.thought,
+            lessonsLearned: thought.extractedInsights,
+            backtrackTo,
+        });
+        // Mark current branch as deadend if in a branch
+        if (session.currentBranch && session.branches[session.currentBranch]) {
+            session.branches[session.currentBranch].status = 'deadend';
+        }
+    }
+    /**
+     * Find the best point to backtrack to
+     */
+    findBacktrackPoint(session, currentThought) {
+        // Look for the last branching point or hypothesis
+        for (let i = session.thoughts.length - 1; i >= 0; i--) {
+            const t = session.thoughts[i];
+            if (t && (t.thoughtType === 'hypothesis' || t.branchFromThought)) {
+                return t.thoughtNumber;
+            }
+        }
+        return 1; // Backtrack to beginning if no better point found
+    }
+    /**
+     * Calculate overall confidence
+     */
+    calculateOverallConfidence(session) {
+        if (session.thoughts.length === 0)
+            return 0;
+        // Factors: hypothesis confirmation, dead ends, insight count
+        let confidence = 0.5;
+        // Boost for confirmed hypotheses
+        const confirmedCount = session.hypotheses.filter(h => h.status === 'confirmed').length;
+        confidence += confirmedCount * 0.1;
+        // Penalty for dead ends
+        confidence -= session.deadEnds.length * 0.05;
+        // Boost for insights
+        confidence += Math.min(session.keyInsights.length * 0.02, 0.2);
+        // Use latest thought confidence if available
+        const lastConfidence = session.thoughts[session.thoughts.length - 1]?.confidence;
+        if (lastConfidence !== undefined) {
+            confidence = (confidence + lastConfidence) / 2;
+        }
+        return Math.max(0, Math.min(1, confidence));
+    }
+    /**
+     * Get AI enhancement for the current thinking
+     */
+    async getAIEnhancement(session, currentThought) {
+        const provider = await getActiveProvider();
+        const recentThoughts = session.thoughts.slice(-5).map(t => t.thought).join('\n');
+        const hypotheses = session.hypotheses.map(h => `- ${h.statement} (${h.status})`).join('\n');
+        const insights = session.keyInsights.join('\n- ');
+        const prompt = `You are helping with step-by-step reasoning about: "${session.problem}"
+
+Recent thoughts:
+${recentThoughts}
+
+Current hypotheses:
+${hypotheses || 'None yet'}
+
+Key insights so far:
+${insights || 'None yet'}
+
+Current thought: ${currentThought.thought}
+Current confidence: ${(session.overallConfidence * 100).toFixed(0)}%
+
+Provide:
+1. A brief suggestion to improve the current reasoning (1-2 sentences)
+2. A recommended next step (1 sentence)
+
+Format as JSON: {"suggestion": "...", "nextStep": "..."}`;
+        const response = await provider.completeJson(prompt, {
+            systemPrompt: 'You are a reasoning assistant. Be concise and helpful.',
+            temperature: 0.5,
+            maxTokens: 200,
+        });
+        return response.data ?? { suggestion: '', nextStep: '' };
+    }
+    /**
+     * Generate a progress summary
+     */
+    generateProgressSummary(session, thoughtNumber) {
+        const parts = [];
+        parts.push(`Thought ${thoughtNumber}/${session.thoughts.length > 0 ? Math.max(...session.thoughts.map(t => t.totalThoughts)) : '?'}`);
+        if (session.hypotheses.length > 0) {
+            const confirmed = session.hypotheses.filter(h => h.status === 'confirmed').length;
+            const testing = session.hypotheses.filter(h => h.status === 'testing' || h.status === 'proposed').length;
+            parts.push(`Hypotheses: ${confirmed} confirmed, ${testing} testing`);
+        }
+        if (session.keyInsights.length > 0) {
+            parts.push(`${session.keyInsights.length} key insights`);
+        }
+        if (session.deadEnds.length > 0) {
+            parts.push(`${session.deadEnds.length} dead ends avoided`);
+        }
+        if (Object.keys(session.branches).length > 0) {
+            parts.push(`${Object.keys(session.branches).length} branches explored`);
+        }
+        parts.push(`Confidence: ${(session.overallConfidence * 100).toFixed(0)}%`);
+        return parts.join(' | ');
+    }
+    /**
+     * Generate final conclusion
+     */
+    generateConclusion(session) {
+        // Find the most confident hypothesis
+        const confirmedHypotheses = session.hypotheses
+            .filter(h => h.status === 'confirmed')
+            .sort((a, b) => b.confidence - a.confidence);
+        // Collect supporting evidence
+        const supportingThoughts = session.thoughts
+            .filter(t => t.confidence && t.confidence > 0.7)
+            .map(t => t.thoughtNumber);
+        // Find alternative approaches that were considered
+        const alternatives = session.hypotheses
+            .filter(h => h.status === 'refuted' || h.status === 'partial')
+            .map(h => h.statement);
+        // Identify caveats
+        const caveats = [];
+        if (session.deadEnds.length > 0) {
+            caveats.push(`${session.deadEnds.length} approach(es) were found to be dead ends`);
+        }
+        if (session.overallConfidence < 0.7) {
+            caveats.push('Moderate uncertainty remains in this conclusion');
+        }
+        // Generate answer
+        let answer = '';
+        if (confirmedHypotheses.length > 0) {
+            answer = confirmedHypotheses.map(h => h.statement).join('. ');
+        }
+        else if (session.keyInsights.length > 0) {
+            answer = session.keyInsights.join('. ');
+        }
+        else {
+            const lastThought = session.thoughts[session.thoughts.length - 1];
+            answer = lastThought?.thought ?? 'No conclusion reached';
+        }
+        return {
+            answer,
+            confidence: session.overallConfidence,
+            supportingThoughts,
+            alternativeConsidered: alternatives,
+            caveats,
+        };
+    }
+    /**
+     * Get current session
+     */
+    getSession() {
+        return this.currentSession;
+    }
+    /**
+     * Reset the server
+     */
+    reset() {
+        this.sessions.clear();
+        this.currentSession = null;
+    }
+}
+// ============================================================================
+// Singleton Instance
+// ============================================================================
+const thinkingServer = new AdvancedThinkingServer();
+/**
+ * Process a thought using the advanced thinking server
+ */
+export async function processThought(input) {
+    return thinkingServer.processThought(input);
+}
+/**
+ * Start a new thinking session
+ */
+export function startSession(problem) {
+    return thinkingServer.startSession(problem);
+}
+/**
+ * Reset the thinking server
+ */
+export function resetThinking() {
+    thinkingServer.reset();
+}
+/**
+ * Get the current session
+ */
+export function getCurrentSession() {
+    return thinkingServer.getSession();
+}
+//# sourceMappingURL=think.js.map

package/dist/tools/think.js.map

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package/package.json

@@ -1,8 +1,8 @@
 {
   "name": "atlas-pipeline-mcp",
-  "version": "1.0.17",
+  "version": "1.0.18",
   "mcpName": "io.github.IamNishant51/atlas-pipeline",
-  "description": "Model Context Protocol server with multi-stage AI pipeline - works with any LLM provider (Ollama, OpenAI, Anthropic). Compatible with Cursor, GitHub Copilot, Windsurf, and more.",
+  "description": "Model Context Protocol server with multi-stage AI pipeline - works with any LLM provider (Ollama, OpenAI, Anthropic). Compatible with Cursor, GitHub Copilot, Windsurf, and more. Features 14 tools including security scanning, test generation, code explanation, and debugging assistance.",
   "main": "dist/server.js",
   "bin": {
     "atlas-pipeline-mcp": "./dist/mcp.js",