agentrinse 0.2.0 → 0.4.0

package/dist/core/apply.js

@@ -7,9 +7,13 @@ import { createRunJournal } from "../state/run-journal.js";
 import { ArtifactExecutionError, artifactIsolationPath, executeArtifactRemove, } from "./artifact-executor.js";
 import { revalidateArtifactRemove, } from "./artifact-revalidation.js";
 import { sha256 } from "./digest.js";
+import { DatabaseExecutionError, executeDatabaseVacuum, } from "./database-executor.js";
+import { revalidateDatabaseVacuum, } from "./database-revalidation.js";
 import { CommandInterruptedError } from "./interruption.js";
 import { verifyCleanupPlan } from "./plan-verification.js";
 import { isPathInside, resolvePhysicalPath } from "./safety.js";
+import { executeWorktreeQuarantine, WorktreeExecutionError, worktreeQuarantinePath, worktreeRecoveryRef, } from "./worktree-executor.js";
+import { currentWorktreeProtectionRoots, revalidateWorktreeQuarantine, } from "./worktree-revalidation.js";
 export class ApplySafetyError extends Error {
     name = "ApplySafetyError";
 }
@@ -39,6 +43,8 @@ export async function applyCleanupPlan(options) {
     await ensurePrivateDirectory(layout.root);
     await ensurePrivateDirectory(layout.locks);
     await ensurePrivateDirectory(layout.runs);
+    await ensurePrivateDirectory(layout.quarantine);
+    await ensurePrivateDirectory(layout.databaseBackups);
     const lock = await acquireApplyLock(layout.locks, {
         planId: plan.planId,
         runId,
@@ -56,9 +62,17 @@ export async function applyCleanupPlan(options) {
                 startedAt,
             });
             throwIfInterrupted(options.signal);
-            const revalidation = options.dependencies?.revalidate === undefined
-                ? await revalidateArtifactRemove(action, plan.home, config, { now: clock })
-                : await options.dependencies.revalidate(action, plan.home, config);
+            const revalidation = action.type === "artifacts.remove"
+                ? options.dependencies?.revalidate === undefined
+                    ? await revalidateArtifactRemove(action, plan.home, config, { now: clock })
+                    : await options.dependencies.revalidate(action, plan.home, config)
+                : action.type === "worktree.quarantine"
+                    ? options.dependencies?.revalidateWorktree === undefined
+                        ? await revalidateWorktreeQuarantine(action, plan.home, config, { now: clock })
+                        : await options.dependencies.revalidateWorktree(action, plan.home, config)
+                    : options.dependencies?.revalidateDatabase === undefined
+                        ? await revalidateDatabaseVacuum(action, plan.home, config)
+                        : await options.dependencies.revalidateDatabase(action, plan.home, config);
             if (revalidation.status === "stale") {
                 await journal.updateAction(action.actionId, {
                     status: "skipped-stale",
@@ -86,57 +100,205 @@ export async function applyCleanupPlan(options) {
                 continue;
             }
             const isolationId = `${runId}-${sha256(action.actionId).slice(0, 12)}`;
-            const isolationPath = artifactIsolationPath(action, isolationId);
-            await journal.updateAction(action.actionId, {
-                status: "applying",
-                isolationPath,
-            });
-            throwIfInterrupted(options.signal);
-            let result;
-            try {
-                result = await (options.dependencies?.execute ??
-                    ((selectedAction, selectedIsolationId) => executeArtifactRemove(selectedAction, {
-                        id: () => selectedIsolationId,
-                        maxEntries: config.audit.maxEntries,
-                        authorization: {
-                            expiresAtMs: Date.parse(plan.expiresAt),
-                            now: clock,
+            if (action.type === "artifacts.remove") {
+                const isolationPath = artifactIsolationPath(action, isolationId);
+                await journal.updateAction(action.actionId, {
+                    status: "applying",
+                    isolationPath,
+                });
+                throwIfInterrupted(options.signal);
+                let result;
+                try {
+                    result = await (options.dependencies?.execute ??
+                        ((selectedAction, selectedIsolationId) => executeArtifactRemove(selectedAction, {
+                            id: () => selectedIsolationId,
+                            maxEntries: config.audit.maxEntries,
+                            authorization: {
+                                expiresAtMs: Date.parse(plan.expiresAt),
+                                now: clock,
+                            },
+                        })))(action, isolationId);
+                }
+                catch (error) {
+                    const executionError = error instanceof ArtifactExecutionError ? error : undefined;
+                    await journal.updateAction(action.actionId, {
+                        status: executionError?.outcome ?? "failed",
+                        completedAt: clock().toISOString(),
+                        isolationPath: executionError?.isolationPath ?? isolationPath,
+                        diagnostic: {
+                            severity: executionError?.outcome === "skipped-stale" ? "warning" : "error",
+                            code: executionError?.diagnosticCode ??
+                                (executionError?.outcome === "skipped-stale"
+                                    ? "ARTIFACT_IDENTITY_CHANGED"
+                                    : executionError?.outcome === "partially-applied"
+                                        ? "ARTIFACT_PARTIALLY_APPLIED"
+                                        : executionError?.outcome === "rolled-back"
+                                            ? "ARTIFACT_ROLLED_BACK"
+                                            : "ARTIFACT_APPLY_FAILED"),
+                            message: error instanceof Error ? error.message : String(error),
+                            adapter: action.adapter,
+                            resourceId: action.resourceId,
                         },
-                    })))(action, isolationId);
+                    });
+                    if (executionError?.outcome === "skipped-stale") {
+                        throwIfInterrupted(options.signal);
+                        continue;
+                    }
+                    break;
+                }
+                await journal.updateAction(action.actionId, {
+                    status: "applied",
+                    completedAt: clock().toISOString(),
+                    reclaimedBytes: result.reclaimedBytes,
+                    isolationPath: result.isolationPath,
+                });
             }
-            catch (error) {
-                const executionError = error instanceof ArtifactExecutionError ? error : undefined;
+            else if (action.type === "worktree.quarantine") {
+                const quarantinePath = worktreeQuarantinePath(action, isolationId);
+                const recoveryRef = worktreeRecoveryRef(action, runId);
+                await journal.updateAction(action.actionId, {
+                    status: "applying",
+                    quarantineEntryId: isolationId,
+                    quarantinePath,
+                    recoveryRef,
+                });
+                throwIfInterrupted(options.signal);
+                let result;
+                try {
+                    result = await (options.dependencies?.executeWorktree ??
+                        ((selectedAction, selectedOptions) => executeWorktreeQuarantine(selectedAction, selectedOptions)))(action, {
+                        runId,
+                        entryId: isolationId,
+                        quarantineDirectory: layout.quarantine,
+                        dependencies: {
+                            clock,
+                            maxEntries: config.audit.maxEntries,
+                            authorization: {
+                                expiresAtMs: Date.parse(plan.expiresAt),
+                                now: clock,
+                            },
+                            revalidateProtection: async () => {
+                                const currentConfig = options.dependencies?.loadCurrentConfig === undefined
+                                    ? undefined
+                                    : agentRinseConfigSchema.parse(await options.dependencies.loadCurrentConfig());
+                                const protectionConfigs = currentConfig === undefined ? [config] : [config, currentConfig];
+                                const roots = (await Promise.all(protectionConfigs.map((protectionConfig) => (options.dependencies?.worktreeProtectionRoots ??
+                                    currentWorktreeProtectionRoots)(action, plan.home, protectionConfig, clock())))).flat();
+                                if (roots.length > 0) {
+                                    const codes = [...new Set(roots.map((root) => root.code))].sort();
+                                    throw new ApplySafetyError(`worktree is protected at quarantine boundary: ${codes.join(", ")}`);
+                                }
+                            },
+                        },
+                    });
+                }
+                catch (error) {
+                    const executionError = error instanceof WorktreeExecutionError ? error : undefined;
+                    await journal.updateAction(action.actionId, {
+                        status: executionError?.outcome ?? "failed",
+                        completedAt: clock().toISOString(),
+                        quarantineEntryId: executionError?.entry?.entryId ?? isolationId,
+                        quarantinePath: executionError?.entry?.quarantinePath ?? quarantinePath,
+                        recoveryRef: executionError?.entry?.recoveryRef ?? recoveryRef,
+                        quarantinedBytes: executionError?.outcome === "partially-applied"
+                            ? (executionError.quarantinedBytes ?? 0)
+                            : 0,
+                        diagnostic: {
+                            severity: executionError?.outcome === "skipped-stale" ? "warning" : "error",
+                            code: executionError?.diagnosticCode ??
+                                (executionError?.outcome === "skipped-stale"
+                                    ? "WORKTREE_IDENTITY_CHANGED"
+                                    : executionError?.outcome === "partially-applied"
+                                        ? "WORKTREE_QUARANTINE_PARTIAL"
+                                        : executionError?.outcome === "rolled-back"
+                                            ? "WORKTREE_QUARANTINE_ROLLED_BACK"
+                                            : "WORKTREE_QUARANTINE_FAILED"),
+                            message: error instanceof Error ? error.message : String(error),
+                            adapter: action.adapter,
+                            resourceId: action.resourceId,
+                        },
+                    });
+                    if (executionError?.outcome === "skipped-stale") {
+                        throwIfInterrupted(options.signal);
+                        continue;
+                    }
+                    break;
+                }
                 await journal.updateAction(action.actionId, {
-                    status: executionError?.outcome ?? "failed",
+                    status: "applied",
                     completedAt: clock().toISOString(),
-                    isolationPath: executionError?.isolationPath ?? isolationPath,
-                    diagnostic: {
-                        severity: executionError?.outcome === "skipped-stale" ? "warning" : "error",
-                        code: executionError?.diagnosticCode ??
-                            (executionError?.outcome === "skipped-stale"
-                                ? "ARTIFACT_IDENTITY_CHANGED"
-                                : executionError?.outcome === "partially-applied"
-                                    ? "ARTIFACT_PARTIALLY_APPLIED"
-                                    : executionError?.outcome === "rolled-back"
-                                        ? "ARTIFACT_ROLLED_BACK"
-                                        : "ARTIFACT_APPLY_FAILED"),
-                        message: error instanceof Error ? error.message : String(error),
-                        adapter: action.adapter,
-                        resourceId: action.resourceId,
-                    },
+                    reclaimedBytes: 0,
+                    quarantinedBytes: result.quarantinedBytes,
+                    quarantineEntryId: result.quarantineEntryId,
+                    quarantinePath: result.quarantinePath,
+                    recoveryRef: result.recoveryRef,
                 });
-                if (executionError?.outcome === "skipped-stale") {
-                    throwIfInterrupted(options.signal);
-                    continue;
+            }
+            else {
+                await journal.updateAction(action.actionId, {
+                    status: "applying",
+                    backupEntryId: isolationId,
+                });
+                throwIfInterrupted(options.signal);
+                let result;
+                try {
+                    result = await (options.dependencies?.executeDatabase ??
+                        ((selectedAction, selectedOptions) => executeDatabaseVacuum(selectedAction, selectedOptions)))(action, {
+                        runId,
+                        entryId: isolationId,
+                        backupDirectory: layout.databaseBackups,
+                        ...(options.signal === undefined ? {} : { signal: options.signal }),
+                        dependencies: {
+                            clock,
+                            authorization: {
+                                expiresAtMs: Date.parse(plan.expiresAt),
+                                now: clock,
+                            },
+                        },
+                    });
                 }
-                break;
+                catch (error) {
+                    if (error instanceof CommandInterruptedError) {
+                        throw error;
+                    }
+                    const executionError = error instanceof DatabaseExecutionError ? error : undefined;
+                    await journal.updateAction(action.actionId, {
+                        status: executionError?.outcome ?? "failed",
+                        completedAt: clock().toISOString(),
+                        backupEntryId: executionError?.entry?.entryId ?? isolationId,
+                        backupPath: executionError?.entry?.backupPath,
+                        diagnostic: {
+                            severity: executionError?.outcome === "skipped-stale" ? "warning" : "error",
+                            code: executionError?.diagnosticCode ??
+                                (executionError?.outcome === "partially-applied"
+                                    ? "DATABASE_VACUUM_PARTIAL"
+                                    : executionError?.outcome === "rolled-back"
+                                        ? "DATABASE_VACUUM_ROLLED_BACK"
+                                        : executionError?.outcome === "skipped-stale"
+                                            ? "DATABASE_IDENTITY_CHANGED"
+                                            : "DATABASE_VACUUM_FAILED"),
+                            message: error instanceof Error ? error.message : String(error),
+                            adapter: action.adapter,
+                            resourceId: action.resourceId,
+                        },
+                    });
+                    if (executionError?.outcome === "skipped-stale") {
+                        throwIfInterrupted(options.signal);
+                        continue;
+                    }
+                    break;
+                }
+                await journal.updateAction(action.actionId, {
+                    status: "applied",
+                    completedAt: clock().toISOString(),
+                    reclaimedBytes: result.reclaimedBytes,
+                    backupEntryId: result.backupEntryId,
+                    backupPath: result.backupPath,
+                    originalBytes: result.originalBytes,
+                    compactedBytes: result.compactedBytes,
+                    retainedBackupBytes: result.retainedBackupBytes,
+                });
             }
-            await journal.updateAction(action.actionId, {
-                status: "applied",
-                completedAt: clock().toISOString(),
-                reclaimedBytes: result.reclaimedBytes,
-                isolationPath: result.isolationPath,
-            });
             throwIfInterrupted(options.signal);
         }
         const run = await journal.complete(clock());

package/dist/core/apply.js.map

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package/dist/core/database-exclusion.d.ts

@@ -0,0 +1,23 @@
+import { type FileHandle } from "node:fs/promises";
+export type LockedFileIdentity = {
+    path: string;
+    device: number;
+    inode: number;
+    mode: number;
+    mtimeMs: number;
+    measuredBytes: number;
+};
+export type DatabaseExclusion = {
+    identities: Map<string, LockedFileIdentity>;
+    handles?: ReadonlyMap<string, FileHandle>;
+    release: () => Promise<void>;
+};
+export declare function lockedFileIdentityMatches(actual: LockedFileIdentity | undefined, expected: {
+    device: number;
+    inode: number;
+    mode: number;
+    mtimeMs: number;
+    measuredBytes: number;
+}): boolean;
+export declare function acquireDatabaseExclusion(paths: string[], platform?: NodeJS.Platform, restoreModes?: ReadonlyMap<string, number>): Promise<DatabaseExclusion>;
+//# sourceMappingURL=database-exclusion.d.ts.map

package/dist/core/database-exclusion.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"database-exclusion.d.ts","sourceRoot":"","sources":["../../src/core/database-exclusion.ts"],"names":[],"mappings":"AAAA,OAAO,EAAQ,KAAK,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAEzD,MAAM,MAAM,kBAAkB,GAAG;IAC/B,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,aAAa,EAAE,MAAM,CAAC;CACvB,CAAC;AAEF,MAAM,MAAM,iBAAiB,GAAG;IAC9B,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAAC;IAC5C,OAAO,CAAC,EAAE,WAAW,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;IAC1C,OAAO,EAAE,MAAM,OAAO,CAAC,IAAI,CAAC,CAAC;CAC9B,CAAC;AAEF,wBAAgB,yBAAyB,CACvC,MAAM,EAAE,kBAAkB,GAAG,SAAS,EACtC,QAAQ,EAAE;IACR,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,aAAa,EAAE,MAAM,CAAC;CACvB,GACA,OAAO,CAST;AAyFD,wBAAsB,wBAAwB,CAC5C,KAAK,EAAE,MAAM,EAAE,EACf,QAAQ,GAAE,MAAM,CAAC,QAA2B,EAC5C,YAAY,GAAE,WAAW,CAAC,MAAM,EAAE,MAAM,CAAa,GACpD,OAAO,CAAC,iBAAiB,CAAC,CA+D5B"}

package/dist/core/database-exclusion.js

@@ -0,0 +1,133 @@
+import { open } from "node:fs/promises";
+export function lockedFileIdentityMatches(actual, expected) {
+    return (actual !== undefined &&
+        actual.device === expected.device &&
+        actual.inode === expected.inode &&
+        actual.mode === expected.mode &&
+        actual.mtimeMs === expected.mtimeMs &&
+        actual.measuredBytes === expected.measuredBytes);
+}
+const nativeLockPromises = new Map();
+function errnoName(errnoNames, value) {
+    return Object.entries(errnoNames).find(([, errno]) => errno === value)?.[0] ?? "EIO";
+}
+function lockError(path, errnoNames, errno) {
+    const code = errnoName(errnoNames, errno);
+    const error = new Error(`could not hold exclusive SQLite access for ${path}: ${code}`);
+    error.code = code;
+    error.errno = errno;
+    error.path = path;
+    error.syscall = "lockf";
+    return error;
+}
+async function loadNativeLock(platform) {
+    if (!["darwin", "linux"].includes(platform)) {
+        const error = new Error(`exclusive SQLite file locking is unsupported on ${platform}`);
+        error.code = "ENOTSUP";
+        throw error;
+    }
+    const { default: koffi } = await import("koffi");
+    const libc = koffi.load(null);
+    const lockf = libc.func("int lockf(int fd, int function, int64 length)");
+    return {
+        lock: (fileDescriptor) => ({
+            result: lockf(fileDescriptor, 2, 0),
+            errno: koffi.errno(),
+        }),
+        unlock: (fileDescriptor) => ({
+            result: lockf(fileDescriptor, 0, 0),
+            errno: koffi.errno(),
+        }),
+        errnoNames: koffi.os.errno,
+    };
+}
+async function releaseHandles(files, nativeLock, restoreInitialModes = false) {
+    let firstError;
+    // Keep every inode read-only until all record locks are released. Restoring
+    // write bits first would let a new opener wait on the old inode at unlock.
+    for (const file of files.reverse()) {
+        nativeLock.unlock(file.handle.fd);
+    }
+    for (const file of files) {
+        try {
+            await file.handle.chmod((restoreInitialModes ? file.initialMode : file.restoreMode) & 0o7777);
+        }
+        catch (error) {
+            firstError ??= error;
+        }
+        try {
+            await file.handle.close();
+        }
+        catch (error) {
+            firstError ??= error;
+        }
+    }
+    if (firstError !== undefined) {
+        throw firstError;
+    }
+}
+export async function acquireDatabaseExclusion(paths, platform = process.platform, restoreModes = new Map()) {
+    let nativeLockPromise = nativeLockPromises.get(platform);
+    if (nativeLockPromise === undefined) {
+        nativeLockPromise = loadNativeLock(platform);
+        nativeLockPromises.set(platform, nativeLockPromise);
+    }
+    const nativeLock = await nativeLockPromise;
+    const files = [];
+    const identities = new Map();
+    const handles = new Map();
+    try {
+        for (const path of [...new Set(paths)].sort()) {
+            const inspectionHandle = await open(path, "r");
+            const initialStats = await inspectionHandle.stat();
+            const restoreMode = restoreModes.get(path) ?? initialStats.mode;
+            if ((initialStats.mode & 0o200) === 0 && (restoreMode & 0o200) !== 0) {
+                await inspectionHandle.chmod(restoreMode & 0o7777);
+            }
+            let handle;
+            try {
+                handle = await open(path, "r+");
+            }
+            catch (error) {
+                await inspectionHandle.chmod(initialStats.mode & 0o7777);
+                await inspectionHandle.close();
+                throw error;
+            }
+            await inspectionHandle.close();
+            const file = { handle, initialMode: initialStats.mode, restoreMode };
+            files.push(file);
+            handles.set(path, handle);
+            const locked = nativeLock.lock(handle.fd);
+            if (locked.result !== 0) {
+                throw lockError(path, nativeLock.errnoNames, locked.errno);
+            }
+            const stats = await handle.stat();
+            await handle.chmod(stats.mode & ~0o222);
+            identities.set(path, {
+                path,
+                device: stats.dev,
+                inode: stats.ino,
+                mode: stats.mode,
+                mtimeMs: stats.mtimeMs,
+                measuredBytes: stats.size,
+            });
+        }
+    }
+    catch (error) {
+        await releaseHandles(files, nativeLock, true).catch(() => undefined);
+        throw error;
+    }
+    let released = false;
+    return {
+        identities,
+        handles,
+        async release() {
+            if (released) {
+                return;
+            }
+            released = true;
+            await releaseHandles(files, nativeLock);
+        },
+    };
+}
+//# sourceMappingURL=database-exclusion.js.map

package/dist/core/database-exclusion.js.map

@@ -0,0 +1 @@
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package/dist/core/database-executor.d.ts

@@ -0,0 +1,45 @@
+import { inspectCodexDatabase, inspectCodexProcesses, inspectDatabaseOpenHandles, vacuumCodexDatabaseInto, verifyCodexDatabaseIntegrity, type CodexDatabaseDependencies } from "../adapters/codex-database.js";
+import type { DatabaseVacuumAction } from "../contracts/action.js";
+import { type DatabaseBackupEntry } from "../contracts/database-backup.js";
+import { acquireDatabaseExclusion } from "./database-exclusion.js";
+import { exchangePaths, renameNoReplace } from "./no-clobber-rename.js";
+export type DatabaseExecutionOutcome = "failed" | "rolled-back" | "partially-applied" | "skipped-stale";
+export declare class DatabaseExecutionError extends Error {
+    readonly outcome: DatabaseExecutionOutcome;
+    readonly diagnosticCode: string;
+    readonly entry?: DatabaseBackupEntry | undefined;
+    readonly name = "DatabaseExecutionError";
+    constructor(message: string, outcome: DatabaseExecutionOutcome, diagnosticCode: string, entry?: DatabaseBackupEntry | undefined);
+}
+export type DatabaseExecutionDependencies = CodexDatabaseDependencies & {
+    clock?: () => Date;
+    inspectDatabase?: typeof inspectCodexDatabase;
+    inspectProcesses?: typeof inspectCodexProcesses;
+    inspectOpenHandles?: typeof inspectDatabaseOpenHandles;
+    vacuumInto?: typeof vacuumCodexDatabaseInto;
+    verifyIntegrity?: typeof verifyCodexDatabaseIntegrity;
+    rename?: typeof renameNoReplace;
+    exchange?: typeof exchangePaths;
+    acquireExclusion?: typeof acquireDatabaseExclusion;
+    authorization?: {
+        expiresAtMs: number;
+        now: () => Date;
+    };
+};
+export type ExecuteDatabaseVacuumOptions = {
+    runId: string;
+    entryId: string;
+    backupDirectory: string;
+    signal?: AbortSignal;
+    dependencies?: DatabaseExecutionDependencies;
+};
+export type DatabaseExecutionResult = {
+    backupEntryId: string;
+    backupPath: string;
+    originalBytes: number;
+    compactedBytes: number;
+    retainedBackupBytes: number;
+    reclaimedBytes: number;
+};
+export declare function executeDatabaseVacuum(action: DatabaseVacuumAction, options: ExecuteDatabaseVacuumOptions): Promise<DatabaseExecutionResult>;
+//# sourceMappingURL=database-executor.d.ts.map

package/dist/core/database-executor.d.ts.map

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