agentrinse 0.2.0 → 0.4.0

package/dist/adapters/codex-database.js

@@ -0,0 +1,409 @@
+import { execFile } from "node:child_process";
+import { createHash } from "node:crypto";
+import { createReadStream } from "node:fs";
+import { lstat, open } from "node:fs/promises";
+import { basename } from "node:path";
+import { pathToFileURL } from "node:url";
+import { promisify } from "node:util";
+import { codexDatabaseFilenameSchema, databaseIdentitySchema, } from "../contracts/action.js";
+import { sha256 } from "../core/digest.js";
+const execFileAsync = promisify(execFile);
+const SQLITE_SEPARATOR = "\u001f";
+const SQLITE_INSPECTION_TIMEOUT_MS = 30_000;
+const SQLITE_INTEGRITY_TIMEOUT_MS = 30 * 60_000;
+const SQLITE_MAINTENANCE_TIMEOUT_MS = 2 * 60 * 60_000;
+export const CODEX_DATABASE_CONTRACTS = {
+    "state_5.sqlite": {
+        database: "state",
+        filename: "state_5.sqlite",
+        migrationVersion: 39,
+        migrationDigest: "e58f1d744ab8979fe6b48ae235fcc18474f72979523d90e8b8104555a05d9a7c",
+        schemaDigest: "0ccab9d0c01ff5f9d3ea65c477892611176d9c8b707d2245c08646da13fc09a0",
+        requiredTables: ["_sqlx_migrations", "threads"],
+    },
+    "logs_2.sqlite": {
+        database: "logs",
+        filename: "logs_2.sqlite",
+        migrationVersion: 2,
+        migrationDigest: "c05a0bee9a9eb893e6d79f9b173fdd3de36f0233f60410dbce924a4080f7be40",
+        schemaDigest: "7dbaeea373d1b81fe583529e6efaa18345c20e4e4639702bf3c2d54f82883874",
+        requiredTables: ["_sqlx_migrations", "logs"],
+    },
+    "goals_1.sqlite": {
+        database: "goals",
+        filename: "goals_1.sqlite",
+        migrationVersion: 1,
+        migrationDigest: "8ce3d311cf69af8f56b0722d617df5552b8ef863a4f60bfe5ba3bf76e30c8f05",
+        schemaDigest: "1e4b7b279b41ddb11bfd6162ea6c1258f42f07a24e9bb4ca8b0148bfa865e8c0",
+        requiredTables: ["_sqlx_migrations", "thread_goals"],
+    },
+    "memories_1.sqlite": {
+        database: "memories",
+        filename: "memories_1.sqlite",
+        migrationVersion: 1,
+        migrationDigest: "580d14eff9340381a3e5ccd7db0156a91649f7466e8e697a2d5d3098bdef1930",
+        schemaDigest: "90be68fa20a2cce1a3cb9eff8058d752eaca624a07ab0a17c1244f4b0b6eed8b",
+        requiredTables: ["_sqlx_migrations", "jobs", "stage1_outputs"],
+    },
+};
+function commandError(error) {
+    const value = error;
+    return {
+        ...(value.code === undefined ? {} : { code: value.code }),
+        stdout: value.stdout ?? "",
+        stderr: value.stderr ?? (error instanceof Error ? error.message : String(error)),
+    };
+}
+async function defaultSqliteRunner(args, options = { timeoutMs: SQLITE_INSPECTION_TIMEOUT_MS }) {
+    const result = await execFileAsync("sqlite3", args, {
+        encoding: "utf8",
+        maxBuffer: 16 * 1024 * 1024,
+        timeout: options.timeoutMs,
+        ...(options.signal === undefined ? {} : { signal: options.signal }),
+    });
+    return { stdout: result.stdout, stderr: result.stderr };
+}
+function sqliteRunOptions(timeoutMs, dependencies) {
+    return dependencies.signal === undefined
+        ? { timeoutMs }
+        : { timeoutMs, signal: dependencies.signal };
+}
+async function querySqlite(path, sql, dependencies, timeoutMs = SQLITE_INSPECTION_TIMEOUT_MS) {
+    const result = await (dependencies.runSqlite ?? defaultSqliteRunner)([
+        "-batch",
+        "-readonly",
+        "-noheader",
+        "-separator",
+        SQLITE_SEPARATOR,
+        "-cmd",
+        ".timeout 1000",
+        `${pathToFileURL(path).href}?immutable=1`,
+        sql,
+    ], sqliteRunOptions(timeoutMs, dependencies));
+    if (result.stderr.trim() !== "") {
+        throw new Error(`sqlite3 could not inspect ${path}: ${result.stderr.trim()}`);
+    }
+    return result.stdout
+        .split("\n")
+        .map((line) => line.trim())
+        .filter((line) => line !== "");
+}
+async function optionalFile(path) {
+    try {
+        const stats = await lstat(path);
+        if (stats.isSymbolicLink() || !stats.isFile()) {
+            throw new Error(`SQLite sidecar is not a regular file: ${path}`);
+        }
+        return {
+            path,
+            device: stats.dev,
+            inode: stats.ino,
+            mode: stats.mode,
+            mtimeMs: stats.mtimeMs,
+            measuredBytes: stats.size,
+        };
+    }
+    catch (error) {
+        if (error instanceof Error &&
+            "code" in error &&
+            error.code === "ENOENT") {
+            return undefined;
+        }
+        throw error;
+    }
+}
+async function readSqliteJournalMode(path, lockedHandle) {
+    const handle = lockedHandle ?? (await open(path, "r"));
+    try {
+        const header = Buffer.alloc(100);
+        const { bytesRead } = await handle.read(header, 0, header.length, 0);
+        if (bytesRead !== header.length || header.toString("binary", 0, 16) !== "SQLite format 3\0") {
+            throw new Error(`Codex database has an invalid SQLite header: ${path}`);
+        }
+        if (header[18] !== 2 || header[19] !== 2) {
+            throw new Error(`Codex database journal mode is not persistent WAL: ${path}`);
+        }
+        return "wal";
+    }
+    finally {
+        if (lockedHandle === undefined) {
+            await handle.close();
+        }
+    }
+}
+async function sha256File(path, signal, lockedHandle) {
+    const hash = createHash("sha256");
+    if (lockedHandle !== undefined) {
+        const buffer = Buffer.allocUnsafe(1024 * 1024);
+        let position = 0;
+        for (;;) {
+            signal?.throwIfAborted();
+            const { bytesRead } = await lockedHandle.read(buffer, 0, buffer.length, position);
+            if (bytesRead === 0) {
+                break;
+            }
+            hash.update(buffer.subarray(0, bytesRead));
+            position += bytesRead;
+        }
+        return hash.digest("hex");
+    }
+    const stream = createReadStream(path, signal === undefined ? {} : { signal });
+    for await (const chunk of stream) {
+        hash.update(chunk);
+    }
+    return hash.digest("hex");
+}
+function parseInteger(value, label) {
+    const parsed = value === undefined ? Number.NaN : Number.parseInt(value, 10);
+    if (!Number.isSafeInteger(parsed) || parsed < 0) {
+        throw new Error(`SQLite returned an invalid ${label}: ${value ?? "<missing>"}`);
+    }
+    return parsed;
+}
+export function codexDatabaseContract(path) {
+    const filename = codexDatabaseFilenameSchema.safeParse(basename(path));
+    return filename.success ? CODEX_DATABASE_CONTRACTS[filename.data] : undefined;
+}
+export async function inspectCodexDatabase(path, dependencies = {}, contractPath = path, identityPath = path, lockedHandle) {
+    const contract = codexDatabaseContract(contractPath);
+    if (contract === undefined) {
+        throw new Error(`unsupported Codex database filename: ${basename(path)}`);
+    }
+    const pathStats = await lstat(path);
+    if (pathStats.isSymbolicLink() || !pathStats.isFile()) {
+        throw new Error(`Codex database is not a regular file: ${path}`);
+    }
+    const stats = lockedHandle === undefined ? pathStats : await lockedHandle.stat();
+    if (stats.dev !== pathStats.dev || stats.ino !== pathStats.ino) {
+        throw new Error(`Codex database path changed after exclusive access: ${path}`);
+    }
+    const values = await querySqlite(path, [
+        "PRAGMA query_only=ON;",
+        "SELECT page_size FROM pragma_page_size;",
+        "SELECT page_count FROM pragma_page_count;",
+        "SELECT freelist_count FROM pragma_freelist_count;",
+        "SELECT auto_vacuum FROM pragma_auto_vacuum;",
+        "PRAGMA quick_check;",
+    ].join(" "), dependencies);
+    if (values[4] !== "ok") {
+        throw new Error(`Codex database quick check failed: ${values.slice(4).join("; ")}`);
+    }
+    const tables = await querySqlite(path, "SELECT name FROM sqlite_schema WHERE type = 'table' ORDER BY name;", dependencies);
+    const migrationRows = tables.includes("_sqlx_migrations")
+        ? await (async () => {
+            const failedMigrations = parseInteger((await querySqlite(path, "SELECT count(*) FROM _sqlx_migrations WHERE success != 1;", dependencies))[0], "failed migration count");
+            if (failedMigrations !== 0) {
+                throw new Error(`Codex database contains ${failedMigrations} failed SQLx migration(s)`);
+            }
+            return querySqlite(path, "SELECT version, description, lower(hex(checksum)) FROM _sqlx_migrations ORDER BY version;", dependencies);
+        })()
+        : [];
+    const migrationVersion = migrationRows.length === 0
+        ? 0
+        : parseInteger(migrationRows.at(-1)?.split(SQLITE_SEPARATOR)[0], "migration version");
+    const migrationDigest = sha256(migrationRows.join("\n"));
+    const schemaRows = await querySqlite(path, "SELECT type, name, tbl_name, coalesce(sql, '') FROM sqlite_schema ORDER BY type, name;", dependencies);
+    const pageSize = parseInteger(values[0], "page size");
+    const pageCount = parseInteger(values[1], "page count");
+    const freelistCount = parseInteger(values[2], "freelist count");
+    const autoVacuum = parseInteger(values[3], "auto-vacuum mode");
+    const journalMode = await readSqliteJournalMode(path, lockedHandle);
+    const wal = await optionalFile(`${path}-wal`);
+    const shm = await optionalFile(`${path}-shm`);
+    const fingerprint = await sha256File(path, dependencies.signal, lockedHandle);
+    const finalStats = lockedHandle === undefined ? await lstat(path) : await lockedHandle.stat();
+    if (finalStats.dev !== stats.dev ||
+        finalStats.ino !== stats.ino ||
+        finalStats.mode !== stats.mode ||
+        finalStats.mtimeMs !== stats.mtimeMs ||
+        finalStats.size !== stats.size) {
+        throw new Error(`Codex database changed during inspection: ${path}`);
+    }
+    const identity = databaseIdentitySchema.parse({
+        path: identityPath,
+        database: contract.database,
+        filename: contract.filename,
+        device: stats.dev,
+        inode: stats.ino,
+        mode: stats.mode,
+        mtimeMs: stats.mtimeMs,
+        measuredBytes: stats.size,
+        pageSize,
+        pageCount,
+        freelistCount,
+        journalMode,
+        autoVacuum,
+        migrationVersion,
+        migrationDigest,
+        tables,
+        ...(wal === undefined ? {} : { wal }),
+        ...(shm === undefined ? {} : { shm }),
+        schemaDigest: sha256(schemaRows.join("\n")),
+        fingerprint,
+    });
+    return {
+        identity,
+        estimatedReclaimBytes: pageSize * freelistCount,
+        freePageRatio: pageCount === 0 ? 0 : freelistCount / pageCount,
+        quickCheck: "ok",
+        walBytes: wal?.measuredBytes ?? 0,
+        shmBytes: shm?.measuredBytes ?? 0,
+        sidecarsPresent: wal !== undefined || shm !== undefined,
+    };
+}
+function sqliteString(value) {
+    return `'${value.replaceAll("'", "''")}'`;
+}
+export async function vacuumCodexDatabaseInto(sourcePath, destinationPath, dependencies = {}) {
+    const result = await (dependencies.runSqlite ?? defaultSqliteRunner)([
+        "-batch",
+        "-readonly",
+        "-cmd",
+        ".timeout 1000",
+        `${pathToFileURL(sourcePath).href}?immutable=1`,
+        `VACUUM INTO ${sqliteString(destinationPath)};`,
+    ], sqliteRunOptions(SQLITE_MAINTENANCE_TIMEOUT_MS, dependencies));
+    if (result.stderr.trim() !== "") {
+        throw new Error(`sqlite3 VACUUM INTO failed: ${result.stderr.trim()}`);
+    }
+    const normalize = await (dependencies.runSqlite ?? defaultSqliteRunner)([
+        "-batch",
+        "-cmd",
+        ".timeout 1000",
+        destinationPath,
+        "PRAGMA synchronous=FULL; PRAGMA auto_vacuum=INCREMENTAL; VACUUM; PRAGMA journal_mode=WAL;",
+    ], sqliteRunOptions(SQLITE_MAINTENANCE_TIMEOUT_MS, dependencies));
+    if (normalize.stderr.trim() !== "") {
+        throw new Error(`sqlite3 could not enable incremental auto-vacuum on the compacted copy: ${normalize.stderr.trim()}`);
+    }
+}
+export async function verifyCodexDatabaseIntegrity(path, dependencies = {}) {
+    const result = await querySqlite(path, "PRAGMA integrity_check;", dependencies, SQLITE_INTEGRITY_TIMEOUT_MS);
+    if (result.length !== 1 || result[0] !== "ok") {
+        throw new Error(`Codex database integrity check failed: ${result.join("; ")}`);
+    }
+}
+async function defaultLsofRunner(paths) {
+    try {
+        const result = await execFileAsync("lsof", ["-nP", "-Fpcfn", "--", ...paths], {
+            encoding: "utf8",
+            maxBuffer: 4 * 1024 * 1024,
+            timeout: 10_000,
+        });
+        return { stdout: result.stdout, stderr: result.stderr };
+    }
+    catch (error) {
+        const value = commandError(error);
+        if (Number(value.code) === 1 && value.stderr === "") {
+            return { stdout: value.stdout, stderr: "" };
+        }
+        throw error;
+    }
+}
+export async function inspectDatabaseOpenHandles(path, dependencies = {}) {
+    if (!["darwin", "linux"].includes(process.platform) && dependencies.runLsof === undefined) {
+        return {
+            status: "unknown",
+            pids: [],
+            reason: `open-file inspection is unsupported on ${process.platform}`,
+        };
+    }
+    try {
+        const paths = (await Promise.all([path, `${path}-wal`, `${path}-shm`].map(async (candidate) => {
+            try {
+                await lstat(candidate);
+                return candidate;
+            }
+            catch (error) {
+                if (error instanceof Error &&
+                    "code" in error &&
+                    error.code === "ENOENT") {
+                    return undefined;
+                }
+                throw error;
+            }
+        }))).filter((candidate) => candidate !== undefined);
+        if (paths.length === 0) {
+            return { status: "idle", pids: [] };
+        }
+        const result = await (dependencies.runLsof ?? defaultLsofRunner)(paths);
+        if (result.stderr.trim() !== "") {
+            return {
+                status: "unknown",
+                pids: [],
+                reason: `lsof reported an incomplete scan: ${result.stderr.trim()}`,
+            };
+        }
+        const pids = [
+            ...new Set(result.stdout
+                .split("\n")
+                .filter((line) => /^p\d+$/u.test(line))
+                .map((line) => Number.parseInt(line.slice(1), 10))),
+        ].sort((left, right) => left - right);
+        return pids.length === 0 ? { status: "idle", pids: [] } : { status: "busy", pids };
+    }
+    catch (error) {
+        return {
+            status: "unknown",
+            pids: [],
+            reason: error instanceof Error ? error.message : String(error),
+        };
+    }
+}
+async function defaultPsRunner() {
+    const result = await execFileAsync("ps", ["-axo", "pid=,comm=,args="], {
+        encoding: "utf8",
+        maxBuffer: 8 * 1024 * 1024,
+        timeout: 10_000,
+    });
+    return { stdout: result.stdout, stderr: result.stderr };
+}
+function isCodexProcess(command) {
+    return (/(?:^|\/)Codex\.app(?:\/|$)/u.test(command) ||
+        /(?:^|\s|\/)codex(?:\s|$)/u.test(command) ||
+        /(?:^|\s|\/)codex-cli(?:\s|$)/u.test(command) ||
+        /(?:^|\s)app-server(?:\s|$)/u.test(command));
+}
+export async function inspectCodexProcesses(dependencies = {}) {
+    if (!["darwin", "linux"].includes(process.platform) && dependencies.runPs === undefined) {
+        return {
+            status: "unknown",
+            pids: [],
+            reason: `Codex process inspection is unsupported on ${process.platform}`,
+        };
+    }
+    try {
+        const result = await (dependencies.runPs ?? defaultPsRunner)();
+        if (result.stderr.trim() !== "") {
+            return {
+                status: "unknown",
+                pids: [],
+                reason: `ps reported an incomplete scan: ${result.stderr.trim()}`,
+            };
+        }
+        const pids = result.stdout
+            .split("\n")
+            .map((line) => /^\s*(\d+)\s+(.+)$/u.exec(line))
+            .filter((match) => match !== null && isCodexProcess(match[2]))
+            .map((match) => Number.parseInt(match[1], 10))
+            .filter((pid) => pid !== process.pid)
+            .sort((left, right) => left - right);
+        return pids.length === 0 ? { status: "idle", pids: [] } : { status: "busy", pids };
+    }
+    catch (error) {
+        return {
+            status: "unknown",
+            pids: [],
+            reason: error instanceof Error ? error.message : String(error),
+        };
+    }
+}
+export function codexDatabaseContractMatches(identity) {
+    const contract = CODEX_DATABASE_CONTRACTS[identity.filename];
+    return (identity.database === contract.database &&
+        identity.migrationVersion === contract.migrationVersion &&
+        identity.migrationDigest === contract.migrationDigest &&
+        identity.schemaDigest === contract.schemaDigest &&
+        contract.requiredTables.every((table) => identity.tables.includes(table)));
+}
+//# sourceMappingURL=codex-database.js.map

package/dist/adapters/codex-database.js.map

@@ -0,0 +1 @@
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package/dist/adapters/git/adapter.d.ts

@@ -1,22 +1,35 @@
+import type { AgentRinseConfig } from "../../config/schema.js";
 import type { AuditAdapter, AuditContext, CollectionResult } from "../../contracts/adapter.js";
 import type { Finding } from "../../contracts/finding.js";
 import type { AdapterProbe } from "../../contracts/report.js";
 import type { ResourceSnapshot } from "../../contracts/resource.js";
+import { measurePath } from "../../core/measure.js";
+import { type MountBoundaryResult } from "../../core/mount-boundaries.js";
 import { type ProcessOwnershipResult } from "../../core/process-ownership.js";
 import type { ReachabilityIndex } from "../../core/reachability.js";
 export type GitRunner = (args: string[]) => Promise<string>;
 export type GitPathExists = (path: string) => Promise<boolean>;
 export type GitProcessProbe = (path: string) => Promise<ProcessOwnershipResult>;
+export type GitWorktreeOptions = AgentRinseConfig["audit"] & AgentRinseConfig["worktrees"] & {
+    platform: NodeJS.Platform;
+};
+export type GitWorktreeDependencies = {
+    measure?: typeof measurePath;
+    mountProbe?: (path: string) => Promise<MountBoundaryResult>;
+};
 export declare class GitWorktreeAuditAdapter implements AuditAdapter {
     private readonly root;
     private readonly runGit;
     private readonly pathExists;
     private readonly processProbe;
     private readonly reachability?;
+    private readonly options;
+    private readonly dependencies;
     readonly id = "git";
-    constructor(root: string | undefined, runGit?: GitRunner, pathExists?: GitPathExists, processProbe?: GitProcessProbe, reachability?: ReachabilityIndex | undefined);
+    constructor(root: string | undefined, runGit?: GitRunner, pathExists?: GitPathExists, processProbe?: GitProcessProbe, reachability?: ReachabilityIndex | undefined, options?: GitWorktreeOptions, dependencies?: GitWorktreeDependencies);
     probe(_context: AuditContext): Promise<AdapterProbe>;
     collect(context: AuditContext, probe: AdapterProbe): Promise<CollectionResult>;
     classify(context: AuditContext, resource: ResourceSnapshot): Promise<Finding>;
+    private actionFor;
 }
 //# sourceMappingURL=adapter.d.ts.map

package/dist/adapters/git/adapter.d.ts.map

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