agentic-qe 3.6.10 → 3.6.12

package/v3/dist/domains/code-intelligence/services/metric-collector/interfaces.d.ts

@@ -51,6 +51,12 @@ export interface ProjectMetrics {
     collectedAt: Date;
     /** Tools used for collection (e.g., ['cloc', 'vitest']) */
     toolsUsed: string[];
+    /** Fix #281: Accuracy indicator when fallback counting is used */
+    accuracy?: {
+        loc: 'accurate' | 'approximate';
+        tests: 'accurate' | 'approximate';
+        overall: 'accurate' | 'approximate';
+    };
 }
 /**
  * Lines of Code metrics from cloc/tokei/fallback
@@ -68,7 +74,7 @@ export interface LOCMetrics {
 /**
  * Available LOC counting tools
  */
-export type LOCSource = 'cloc' | 'tokei' | 'fallback';
+export type LOCSource = 'cloc' | 'tokei' | 'node-native' | 'fallback';
 /**
  * Test count metrics from test runners
  */

package/v3/dist/domains/code-intelligence/services/metric-collector/interfaces.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"interfaces.d.ts","sourceRoot":"","sources":["../../../../../src/domains/code-intelligence/services/metric-collector/interfaces.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAMH;;;GAGG;AACH,MAAM,WAAW,eAAe;IAC9B;;;;OAIG;IACH,UAAU,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,CAAC,CAAC;IAEzD;;;;OAIG;IACH,QAAQ,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;IAEnD;;;;OAIG;IACH,UAAU,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC;IAEtD;;;;;OAKG;IACH,aAAa,CAAC,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,CAAC,CAAC;CAC/E;AAMD;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,4BAA4B;IAC5B,GAAG,EAAE,UAAU,CAAC;IAChB,yBAAyB;IACzB,KAAK,EAAE,WAAW,CAAC;IACnB,4BAA4B;IAC5B,QAAQ,EAAE,cAAc,CAAC;IACzB,4CAA4C;IAC5C,WAAW,EAAE,IAAI,CAAC;IAClB,2DAA2D;IAC3D,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,kEAAkE;IAClE,QAAQ,CAAC,EAAE;QACT,GAAG,EAAE,UAAU,GAAG,aAAa,CAAC;QAChC,KAAK,EAAE,UAAU,GAAG,aAAa,CAAC;QAClC,OAAO,EAAE,UAAU,GAAG,aAAa,CAAC;KACrC,CAAC;CACH;AAED;;GAEG;AACH,MAAM,WAAW,UAAU;IACzB,0DAA0D;IAC1D,KAAK,EAAE,MAAM,CAAC;IACd,8EAA8E;IAC9E,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACnC,oCAAoC;IACpC,MAAM,EAAE,SAAS,CAAC;IAClB,yCAAyC;IACzC,YAAY,EAAE,MAAM,EAAE,CAAC;CACxB;AAED;;GAEG;AACH,MAAM,MAAM,SAAS,GAAG,MAAM,GAAG,OAAO,GAAG,aAAa,GAAG,UAAU,CAAC;AAEtE;;GAEG;AACH,MAAM,WAAW,WAAW;IAC1B,4BAA4B;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,2BAA2B;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,kCAAkC;IAClC,WAAW,EAAE,MAAM,CAAC;IACpB,iCAAiC;IACjC,GAAG,EAAE,MAAM,CAAC;IACZ,8BAA8B;IAC9B,MAAM,EAAE,UAAU,CAAC;CACpB;AAED;;GAEG;AACH,MAAM,MAAM,UAAU,GAAG,QAAQ,GAAG,MAAM,GAAG,OAAO,GAAG,QAAQ,GAAG,IAAI,GAAG,UAAU,CAAC;AAEpF;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,8CAA8C;IAC9C,OAAO,EAAE,MAAM,CAAC;IAChB,6CAA6C;IAC7C,YAAY,EAAE,MAAM,CAAC;IACrB,wCAAwC;IACxC,YAAY,EAAE,MAAM,CAAC;IACrB,4CAA4C;IAC5C,iBAAiB,EAAE,MAAM,CAAC;IAC1B,6BAA6B;IAC7B,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC,CAAC;CACvC;AAED;;GAEG;AACH,MAAM,WAAW,aAAa;IAC5B,8BAA8B;IAC9B,OAAO,EAAE,MAAM,CAAC;IAChB,6BAA6B;IAC7B,YAAY,EAAE,MAAM,CAAC;IACrB,wCAAwC;IACxC,YAAY,EAAE,MAAM,CAAC;IACrB,4CAA4C;IAC5C,iBAAiB,EAAE,MAAM,CAAC;CAC3B;AAMD;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC,kEAAkE;IAClE,OAAO,EAAE,MAAM,CAAC;IAChB,+CAA+C;IAC/C,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,iDAAiD;IACjD,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,gDAAgD;IAChD,WAAW,EAAE,OAAO,CAAC;IACrB,8DAA8D;IAC9D,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED;;GAEG;AACH,eAAO,MAAM,qBAAqB,EAAE,qBAenC,CAAC;AAMF;;GAEG;AACH,MAAM,WAAW,gBAAgB;IAC/B,gBAAgB;IAChB,IAAI,EAAE,MAAM,CAAC;IACb,oCAAoC;IACpC,SAAS,EAAE,OAAO,CAAC;IACnB,gCAAgC;IAChC,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,8BAA8B;IAC9B,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED;;GAEG;AACH,MAAM,WAAW,WAAW;IAC1B,iBAAiB;IACjB,IAAI,EAAE,oBAAoB,GAAG,SAAS,GAAG,aAAa,GAAG,gBAAgB,GAAG,SAAS,CAAC;IACtF,mCAAmC;IACnC,OAAO,EAAE,MAAM,CAAC;IAChB,uBAAuB;IACvB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,kCAAkC;IAClC,KAAK,CAAC,EAAE,KAAK,CAAC;CACf"}

package/v3/dist/domains/code-intelligence/services/metric-collector/interfaces.js

@@ -11,7 +11,16 @@
  */
 export const DEFAULT_METRIC_CONFIG = {
     timeout: 60000,
-    excludeDirs: ['node_modules', 'dist', 'coverage', 'build', '.git', 'vendor', 'target'],
+    excludeDirs: [
+        // JS/TS ecosystem
+        'node_modules', 'dist', 'build', 'coverage', '.nyc_output', '.next', '.nuxt', '.output',
+        // Python ecosystem
+        '__pycache__', '.venv', 'venv', '.tox', '.mypy_cache', '.pytest_cache', '.eggs', '*.egg-info',
+        // Rust / Java / Go
+        'target', '.gradle', 'vendor', '.bundle',
+        // General
+        '.git', '.svn', '.hg',
+    ],
     testPatterns: ['**/*.test.ts', '**/*.spec.ts', '**/*.test.js', '**/*.spec.js'],
     enableCache: true,
     cacheTTL: 300000,

package/v3/dist/domains/code-intelligence/services/metric-collector/interfaces.js.map

@@ -1 +1 @@
-{"version":3,"file":"interfaces.js","sourceRoot":"","sources":["../../../../../src/domains/code-intelligence/services/metric-collector/interfaces.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAuJH;;GAEG;AACH,MAAM,CAAC,MAAM,qBAAqB,GAA0B;IAC1D,OAAO,EAAE,KAAK;IACd,WAAW,EAAE,CAAC,cAAc,EAAE,MAAM,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,QAAQ,CAAC;IACtF,YAAY,EAAE,CAAC,cAAc,EAAE,cAAc,EAAE,cAAc,EAAE,cAAc,CAAC;IAC9E,WAAW,EAAE,IAAI;IACjB,QAAQ,EAAE,MAAM;CACjB,CAAC"}
+{"version":3,"file":"interfaces.js","sourceRoot":"","sources":["../../../../../src/domains/code-intelligence/services/metric-collector/interfaces.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AA6JH;;GAEG;AACH,MAAM,CAAC,MAAM,qBAAqB,GAA0B;IAC1D,OAAO,EAAE,KAAK;IACd,WAAW,EAAE;QACX,kBAAkB;QAClB,cAAc,EAAE,MAAM,EAAE,OAAO,EAAE,UAAU,EAAE,aAAa,EAAE,OAAO,EAAE,OAAO,EAAE,SAAS;QACvF,mBAAmB;QACnB,aAAa,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,aAAa,EAAE,eAAe,EAAE,OAAO,EAAE,YAAY;QAC7F,mBAAmB;QACnB,QAAQ,EAAE,SAAS,EAAE,QAAQ,EAAE,SAAS;QACxC,UAAU;QACV,MAAM,EAAE,MAAM,EAAE,KAAK;KACtB;IACD,YAAY,EAAE,CAAC,cAAc,EAAE,cAAc,EAAE,cAAc,EAAE,cAAc,CAAC;IAC9E,WAAW,EAAE,IAAI;IACjB,QAAQ,EAAE,MAAM;CACjB,CAAC"}

package/v3/dist/domains/code-intelligence/services/metric-collector/loc-counter.js

@@ -12,7 +12,7 @@
  * @see docs/plans/AQE_V3_IMPROVEMENTS_PLAN.md - Phase 5, RM-002
  */
 import { execSync, spawnSync } from 'child_process';
-import { existsSync, readdirSync, readFileSync } from 'fs';
+import { existsSync, readdirSync, readFileSync, statSync } from 'fs';
 import { join, extname } from 'path';
 import { DEFAULT_METRIC_CONFIG, } from './interfaces.js';
 import { safeJsonParse } from '@shared/safe-json.js';
@@ -220,29 +220,53 @@ function getLanguageForExtension(ext) {
     return null;
 }
 /**
- * Manual line counting fallback
+ * Node.js-native line counting — reads files and counts non-blank, non-comment lines.
+ * This is accurate (not an estimate) and requires no external tools.
+ *
+ * Fix #281: Renamed from 'fallback' to 'node-native' to distinguish from
+ * any heuristic/estimation approach. Uses readFileSync on every source file
+ * with proper comment stripping per language.
  */
 function manualLOCCount(projectPath, config) {
     const byLanguage = {};
     let total = 0;
-    function walkDirectory(dirPath) {
-        if (!existsSync(dirPath)) {
+    const excludeSet = new Set(config.excludeDirs);
+    // Max file size to read (2MB) — skip minified bundles, generated files
+    const MAX_FILE_SIZE = 2 * 1024 * 1024;
+    function walkDirectory(dirPath, depth) {
+        if (!existsSync(dirPath) || depth > 20) {
+            return;
+        }
+        let entries;
+        try {
+            entries = readdirSync(dirPath, { withFileTypes: true });
+        }
+        catch {
+            // Permission denied or other FS error — skip
             return;
         }
-        const entries = readdirSync(dirPath, { withFileTypes: true });
         for (const entry of entries) {
             const fullPath = join(dirPath, entry.name);
             if (entry.isDirectory()) {
-                // Skip excluded directories
-                if (config.excludeDirs.includes(entry.name)) {
+                // Skip excluded directories (exact match or glob-like suffix match)
+                if (excludeSet.has(entry.name) || entry.name.startsWith('.')) {
                     continue;
                 }
-                walkDirectory(fullPath);
+                walkDirectory(fullPath, depth + 1);
             }
             else if (entry.isFile()) {
                 const ext = extname(entry.name);
                 const language = getLanguageForExtension(ext);
                 if (language) {
+                    // Skip files that are too large (likely generated/minified)
+                    try {
+                        const stat = statSync(fullPath);
+                        if (stat.size > MAX_FILE_SIZE)
+                            continue;
+                    }
+                    catch {
+                        continue;
+                    }
                     const lines = countFileLines(fullPath);
                     byLanguage[language] = (byLanguage[language] || 0) + lines;
                     total += lines;
@@ -250,11 +274,11 @@ function manualLOCCount(projectPath, config) {
             }
         }
     }
-    walkDirectory(projectPath);
+    walkDirectory(projectPath, 0);
     return {
         total,
         byLanguage,
-        source: 'fallback',
+        source: 'node-native',
         excludedDirs: config.excludeDirs,
     };
 }

package/v3/dist/domains/code-intelligence/services/metric-collector/loc-counter.js.map

@@ -1 +1 @@
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package/v3/dist/domains/coverage-analysis/coordinator.js

@@ -734,7 +734,7 @@ export class CoverageAnalysisCoordinator extends BaseDomainCoordinator {
         return forecast;
     }
     createGapEmbedding(gap) {
-        const VECTOR_DIMENSION = 128;
+        const VECTOR_DIMENSION = 768;
         const embedding = new Array(VECTOR_DIMENSION).fill(0);
         // Encode gap characteristics
         embedding[0] = gap.riskScore;

package/v3/dist/domains/coverage-analysis/services/coverage-analyzer.js

@@ -18,7 +18,7 @@ const DEFAULT_CONFIG = {
 // ============================================================================
 export class CoverageAnalyzerService {
     static DEFAULT_THRESHOLD = 80;
-    static VECTOR_DIMENSION = 128;
+    static VECTOR_DIMENSION = 768;
     memory;
     config;
     llmRouter;

package/v3/dist/domains/coverage-analysis/services/coverage-embedder.d.ts

@@ -21,7 +21,7 @@ import { CoverageVectorMetadata } from './hnsw-index';
  * Configuration for coverage embedding generation
  */
 export interface CoverageEmbedderConfig {
-    /** Number of dimensions for the embedding (default: 128) */
+    /** Number of dimensions for the embedding (default: 768) */
     dimensions: number;
     /** Include file path features in embedding */
     includePathFeatures: boolean;

package/v3/dist/domains/coverage-analysis/services/coverage-embedder.js

@@ -19,7 +19,7 @@
  * Default embedder configuration
  */
 export const DEFAULT_EMBEDDER_CONFIG = {
-    dimensions: 128,
+    dimensions: 768,
     includePathFeatures: true,
     includeTemporalFeatures: true,
     normalization: 'l2',

package/v3/dist/domains/coverage-analysis/services/gap-detector.js

@@ -18,7 +18,7 @@ const DEFAULT_CONFIG = {
 // ============================================================================
 export class GapDetectorService {
     static DEFAULT_MIN_COVERAGE = 80;
-    static VECTOR_DIMENSION = 128;
+    static VECTOR_DIMENSION = 768;
     memory;
     config;
     llmRouter;

package/v3/dist/domains/coverage-analysis/services/ghost-coverage-analyzer.js

@@ -15,7 +15,7 @@ const ALL_CATEGORIES = [
     'missing-integration-contract', 'absent-edge-case', 'missing-security-check',
 ];
 const DEFAULT_CONFIG = {
-    dimensions: 128, minConfidence: 0.3, maxGaps: 50,
+    dimensions: 768, minConfidence: 0.3, maxGaps: 50,
     riskWeight: 0.6, distanceWeight: 0.4,
     namespace: 'ghost-surface', idealSurfaceDecay: 0.95,
 };

package/v3/dist/domains/coverage-analysis/services/hnsw-index.d.ts

@@ -22,7 +22,7 @@ import { MemoryBackend } from '../../../kernel/interfaces';
  * HNSW index configuration options
  */
 export interface HNSWIndexConfig {
-    /** Number of dimensions for vectors (default: 128) */
+    /** Number of dimensions for vectors (default: 768) */
     dimensions: number;
     /** Number of neighbors per node (default: 16) */
     M: number;
@@ -246,7 +246,16 @@ export declare class HNSWIndex implements IHNSWIndex {
      * Clear all entries in the index.
      */
     clear(): Promise<void>;
+    /**
+     * Validate and auto-resize vectors to match HNSW configured dimensions.
+     * Fix #279: Prevents Rust WASM panic when RealEmbeddings (768-dim) are
+     * passed to a mismatched-dim HNSW index.
+     */
     private validateVector;
+    /**
+     * Resize vector to target dimensions using averaging (shrink) or zero-padding (grow).
+     */
+    private resizeVector;
     private buildKey;
     /**
      * Convert a plain vector to IEmbedding format for @ruvector/gnn.

package/v3/dist/domains/coverage-analysis/services/hnsw-index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"hnsw-index.d.ts","sourceRoot":"","sources":["../../../../src/domains/coverage-analysis/services/hnsw-index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAEH,OAAO,EAAE,aAAa,EAAE,MAAM,4BAA4B,CAAC;AAqC3D;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B,sDAAsD;IACtD,UAAU,EAAE,MAAM,CAAC;IACnB,iDAAiD;IACjD,CAAC,EAAE,MAAM,CAAC;IACV,wEAAwE;IACxE,cAAc,EAAE,MAAM,CAAC;IACvB,kEAAkE;IAClE,QAAQ,EAAE,MAAM,CAAC;IACjB,0CAA0C;IAC1C,MAAM,EAAE,QAAQ,GAAG,IAAI,GAAG,IAAI,CAAC;IAC/B,kCAAkC;IAClC,SAAS,EAAE,MAAM,CAAC;IAClB,oCAAoC;IACpC,WAAW,EAAE,MAAM,CAAC;CACrB;AAED;;GAEG;AACH,eAAO,MAAM,mBAAmB,EAAE,eAQjC,CAAC;AAMF;;GAEG;AACH,MAAM,WAAW,UAAU;IACzB,gCAAgC;IAChC,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;IAE5B,qCAAqC;IACrC,MAAM,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,QAAQ,CAAC,EAAE,sBAAsB,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAExF,qCAAqC;IACrC,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,gBAAgB,EAAE,CAAC,CAAC;IAEhE,oCAAoC;IACpC,WAAW,CAAC,KAAK,EAAE,cAAc,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAEpD,qCAAqC;IACrC,MAAM,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAAC;IAEtC,2BAA2B;IAC3B,QAAQ,IAAI,OAAO,CAAC,cAAc,CAAC,CAAC;IAEpC,qCAAqC;IACrC,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;IAEvB,gDAAgD;IAChD,iBAAiB,IAAI,OAAO,CAAC;CAC9B;AAED;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,GAAG,EAAE,MAAM,CAAC;IACZ,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,QAAQ,CAAC,EAAE,sBAAsB,CAAC;CACnC;AAED;;GAEG;AACH,MAAM,WAAW,sBAAsB;IACrC,gBAAgB;IAChB,QAAQ,EAAE,MAAM,CAAC;IACjB,+BAA+B;IAC/B,YAAY,EAAE,MAAM,CAAC;IACrB,iCAAiC;IACjC,cAAc,EAAE,MAAM,CAAC;IACvB,mCAAmC;IACnC,gBAAgB,EAAE,MAAM,CAAC;IACzB,oCAAoC;IACpC,iBAAiB,EAAE,MAAM,CAAC;IAC1B,gCAAgC;IAChC,kBAAkB,EAAE,MAAM,CAAC;IAC3B,mCAAmC;IACnC,oBAAoB,EAAE,MAAM,CAAC;IAC7B,uBAAuB;IACvB,SAAS,EAAE,MAAM,CAAC;IAClB,+BAA+B;IAC/B,WAAW,EAAE,MAAM,CAAC;IACpB,yBAAyB;IACzB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;GAEG;AACH,MAAM,WAAW,gBAAgB;IAC/B,iCAAiC;IACjC,GAAG,EAAE,MAAM,CAAC;IACZ,qDAAqD;IACrD,KAAK,EAAE,MAAM,CAAC;IACd,uCAAuC;IACvC,QAAQ,EAAE,MAAM,CAAC;IACjB,0BAA0B;IAC1B,QAAQ,CAAC,EAAE,sBAAsB,CAAC;CACnC;AAED;;;GAGG;AACH,MAAM,MAAM,eAAe,GAAG,cAAc,CAAC;AAE7C;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,wCAAwC;IACxC,UAAU,EAAE,OAAO,CAAC;IACpB;;;OAGG;IACH,WAAW,EAAE,eAAe,CAAC;IAC7B,uCAAuC;IACvC,WAAW,EAAE,MAAM,CAAC;IACpB,wCAAwC;IACxC,cAAc,EAAE,MAAM,CAAC;IACvB,6CAA6C;IAC7C,kBAAkB,EAAE,MAAM,CAAC;IAC3B,qCAAqC;IACrC,kBAAkB,EAAE,MAAM,CAAC;IAC3B,qCAAqC;IACrC,kBAAkB,EAAE,MAAM,CAAC;IAC3B,4CAA4C;IAC5C,gBAAgB,EAAE,MAAM,CAAC;IACzB,4CAA4C;IAC5C,gBAAgB,EAAE,MAAM,CAAC;CAC1B;AAMD;;;;;;;;;;;;;GAaG;AACH,qBAAa,SAAU,YAAW,UAAU;IAoBxC,OAAO,CAAC,QAAQ,CAAC,MAAM;IAnBzB,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAkB;IACzC,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAe;IACrC,OAAO,CAAC,eAAe,CAAgB;IAGvC,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAmC;IAG/D,OAAO,CAAC,aAAa,CAAwC;IAC7D,OAAO,CAAC,WAAW,CAAS;IAG5B,OAAO,CAAC,UAAU,CAAkC;IACpD,OAAO,CAAC,UAAU,CAAkC;IACpD,OAAO,CAAC,aAAa,CAAkD;IACvE,OAAO,CAAC,WAAW,CAAoC;IACvD,OAAO,CAAC,SAAS,CAAK;gBAGH,MAAM,EAAE,aAAa,EACtC,MAAM,GAAE,OAAO,CAAC,eAAe,CAAM;IAUvC;;;;;OAKG;IACG,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IAgCjC;;;OAGG;IACH,iBAAiB,IAAI,OAAO;IAI5B;;;;OAIG;IACH,cAAc,IAAI,eAAe;IAIjC;;;OAGG;IACH,mBAAmB,IAAI,OAAO;IAI9B;;;;;;;;OAQG;IACG,MAAM,CACV,GAAG,EAAE,MAAM,EACX,MAAM,EAAE,MAAM,EAAE,EAChB,QAAQ,CAAC,EAAE,sBAAsB,GAChC,OAAO,CAAC,IAAI,CAAC;IAwChB;;;;;;;;OAQG;IACG,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,gBAAgB,EAAE,CAAC;IAsBrE;;;;;;;;OAQG;IACH,OAAO,CAAC,cAAc;IAyCtB;;;;OAIG;IACG,WAAW,CAAC,KAAK,EAAE,cAAc,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;IAiBzD;;;;;;;;OAQG;IACG,MAAM,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAqB3C;;;;OAIG;IACG,QAAQ,IAAI,OAAO,CAAC,cAAc,CAAC;IAczC;;OAEG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAoB5B;;;;OAIG;IACH,OAAO,CAAC,cAAc;IActB;;OAEG;IACH,OAAO,CAAC,YAAY;IA2BpB,OAAO,CAAC,QAAQ;IAIhB;;;;;;;OAOG;IACH,OAAO,CAAC,iBAAiB;IAgBzB,OAAO,CAAC,oBAAoB;IAa5B,OAAO,CAAC,mBAAmB;IAS3B,OAAO,CAAC,mBAAmB;IAM3B,OAAO,CAAC,0BAA0B;IAQlC;;OAEG;IACH,WAAW,CAAC,EAAE,EAAE,MAAM,GAAG,IAAI;CAM9B;AAgBD;;;;;;;;;;;;;;;GAeG;AACH,wBAAgB,eAAe,CAC7B,MAAM,EAAE,aAAa,EACrB,MAAM,CAAC,EAAE,OAAO,CAAC,eAAe,CAAC,GAChC,SAAS,CAEX;AAED;;;;;;;GAOG;AACH,wBAAsB,aAAa,CACjC,KAAK,EAAE,SAAS,EAChB,WAAW,GAAE,MAAc,EAC3B,WAAW,GAAE,MAAa,GACzB,OAAO,CAAC;IACT,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,kBAAkB,EAAE,MAAM,CAAC;IAC3B,QAAQ,EAAE,OAAO,CAAC;IAClB,WAAW,EAAE,eAAe,CAAC;CAC9B,CAAC,CA6BD"}

package/v3/dist/domains/coverage-analysis/services/hnsw-index.js

@@ -39,7 +39,7 @@ async function loadRuvectorGnn() {
  * Default HNSW configuration optimized for coverage analysis
  */
 export const DEFAULT_HNSW_CONFIG = {
-    dimensions: 128,
+    dimensions: 768,
     M: 16,
     efConstruction: 200,
     efSearch: 100,
@@ -153,7 +153,7 @@ export class HNSWIndex {
         if (!this.initialized) {
             await this.initialize();
         }
-        this.validateVector(vector);
+        vector = this.validateVector(vector);
         // Check for duplicate
         if (this.keyToLabel.has(key)) {
             // Update existing - remove old and re-add
@@ -193,7 +193,7 @@ export class HNSWIndex {
         if (!this.initialized) {
             await this.initialize();
         }
-        this.validateVector(query);
+        query = this.validateVector(query);
         const startTime = performance.now();
         // Use @ruvector/gnn differentiable search
         const results = this.stats.vectorCount > 0
@@ -328,15 +328,50 @@ export class HNSWIndex {
     // ============================================================================
     // Private Helper Methods
     // ============================================================================
+    /**
+     * Validate and auto-resize vectors to match HNSW configured dimensions.
+     * Fix #279: Prevents Rust WASM panic when RealEmbeddings (768-dim) are
+     * passed to a mismatched-dim HNSW index.
+     */
     validateVector(vector) {
+        // Auto-resize if dimensions don't match
         if (vector.length !== this.config.dimensions) {
-            throw new Error(`Vector dimension mismatch: expected ${this.config.dimensions}, got ${vector.length}`);
+            return this.resizeVector(vector, this.config.dimensions);
         }
         for (let i = 0; i < vector.length; i++) {
             if (!Number.isFinite(vector[i])) {
                 throw new Error(`Invalid vector value at index ${i}: ${vector[i]}`);
             }
         }
+        return vector;
+    }
+    /**
+     * Resize vector to target dimensions using averaging (shrink) or zero-padding (grow).
+     */
+    resizeVector(vector, targetDim) {
+        if (vector.length === targetDim)
+            return vector;
+        if (vector.length > targetDim) {
+            // Shrink: average adjacent values to preserve information
+            const result = new Array(targetDim).fill(0);
+            const ratio = vector.length / targetDim;
+            for (let i = 0; i < targetDim; i++) {
+                const start = Math.floor(i * ratio);
+                const end = Math.floor((i + 1) * ratio);
+                let sum = 0;
+                for (let j = start; j < end; j++) {
+                    sum += vector[j];
+                }
+                result[i] = sum / (end - start);
+            }
+            return result;
+        }
+        // Grow: zero-pad
+        const result = new Array(targetDim).fill(0);
+        for (let i = 0; i < vector.length; i++) {
+            result[i] = vector[i];
+        }
+        return result;
     }
     buildKey(key) {
         return `${this.config.namespace}:${key}`;
@@ -433,7 +468,7 @@ export function createHNSWIndex(memory, config) {
  * @returns Benchmark results including backend type
  */
 export async function benchmarkHNSW(index, vectorCount = 10000, searchCount = 1000) {
-    const dimensions = 128;
+    const dimensions = 768;
     const startInsert = performance.now();
     // Insert vectors
     for (let i = 0; i < vectorCount; i++) {

package/v3/dist/domains/coverage-analysis/services/hnsw-index.js.map

@@ -1 +1 @@
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package/v3/dist/domains/coverage-analysis/services/sublinear-analyzer.d.ts

@@ -36,7 +36,7 @@ export interface SublinearAnalyzerConfig {
     autoIndex: boolean;
     /** Batch size for bulk operations (default: 100) */
     batchSize: number;
-    /** Vector dimensions for embeddings (default: 128) */
+    /** Vector dimensions for embeddings (default: 768) */
     dimensions: number;
 }
 /**

package/v3/dist/domains/coverage-analysis/services/sublinear-analyzer.js

@@ -30,7 +30,7 @@ export const DEFAULT_ANALYZER_CONFIG = {
     maxResults: 100,
     autoIndex: true,
     batchSize: 100,
-    dimensions: 128,
+    dimensions: 768,
 };
 // ============================================================================
 // Sublinear Coverage Analyzer Implementation

package/v3/dist/init/fleet-integration.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"fleet-integration.d.ts","sourceRoot":"","sources":["../../src/init/fleet-integration.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAoB,uBAAuB,EAAE,MAAM,kBAAkB,CAAC;AAU7E,MAAM,WAAW,uBAAuB;IACtC,6BAA6B;IAC7B,WAAW,EAAE,MAAM,CAAC;IACpB,wCAAwC;IACxC,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,8CAA8C;IAC9C,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,gCAAgC;IAChC,WAAW,CAAC,EAAE,OAAO,CAAC,uBAAuB,CAAC,CAAC;CAChD;AAED,MAAM,WAAW,sBAAsB;IACrC,6CAA6C;IAC7C,QAAQ,EAAE,OAAO,CAAC;IAClB,+CAA+C;IAC/C,UAAU,EAAE,MAAM,CAAC;IACnB,gCAAgC;IAChC,WAAW,EAAE,OAAO,CAAC;IACrB,qCAAqC;IACrC,aAAa,EAAE,OAAO,CAAC;CACxB;AAED,MAAM,WAAW,sBAAsB;IACrC,+BAA+B;IAC/B,gBAAgB,EAAE,sBAAsB,CAAC;IACzC,kDAAkD;IAClD,aAAa,EAAE,OAAO,CAAC;IACvB,+BAA+B;IAC/B,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAMD,qBAAa,iBAAiB;IAC5B,OAAO,CAAC,WAAW,CAAS;IAC5B,OAAO,CAAC,OAAO,CAA0B;IACzC,OAAO,CAAC,YAAY,CAAC,CAAmB;gBAE5B,OAAO,EAAE,uBAAuB;IAK5C;;;OAGG;IACG,qBAAqB,IAAI,OAAO,CAAC,sBAAsB,CAAC;IAwE9D;;;OAGG;IACG,uBAAuB,IAAI,OAAO,CAAC;QAAE,OAAO,EAAE,OAAO,CAAC;QAAC,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC;IAsE/E;;;OAGG;IACG,kBAAkB,IAAI,OAAO,CAAC;QAClC,yBAAyB,EAAE,OAAO,CAAC;QACnC,kBAAkB,EAAE,MAAM,CAAC;QAC3B,uBAAuB,EAAE,MAAM,EAAE,CAAC;KACnC,CAAC;IAaF;;;OAGG;YACW,wBAAwB;IAoBtC;;OAEG;YACW,eAAe;IAgB7B;;OAEG;YACW,UAAU;CAoBzB;AAMD;;GAEG;AACH,wBAAgB,uBAAuB,CACrC,OAAO,EAAE,uBAAuB,GAC/B,iBAAiB,CAEnB;AAED;;;GAGG;AACH,wBAAsB,2BAA2B,CAC/C,WAAW,EAAE,MAAM,GAClB,OAAO,CAAC,sBAAsB,CAAC,CASjC;AAED;;;GAGG;AACH,wBAAsB,yBAAyB,CAC7C,WAAW,EAAE,MAAM,EACnB,OAAO,GAAE;IACP,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,cAAc,CAAC,EAAE,OAAO,CAAC;CACrB,GACL,OAAO,CAAC,sBAAsB,CAAC,CAOjC"}
+{"version":3,"file":"fleet-integration.d.ts","sourceRoot":"","sources":["../../src/init/fleet-integration.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAoB,uBAAuB,EAAE,MAAM,kBAAkB,CAAC;AAW7E,MAAM,WAAW,uBAAuB;IACtC,6BAA6B;IAC7B,WAAW,EAAE,MAAM,CAAC;IACpB,wCAAwC;IACxC,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,8CAA8C;IAC9C,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,gCAAgC;IAChC,WAAW,CAAC,EAAE,OAAO,CAAC,uBAAuB,CAAC,CAAC;CAChD;AAED,MAAM,WAAW,sBAAsB;IACrC,6CAA6C;IAC7C,QAAQ,EAAE,OAAO,CAAC;IAClB,+CAA+C;IAC/C,UAAU,EAAE,MAAM,CAAC;IACnB,gCAAgC;IAChC,WAAW,EAAE,OAAO,CAAC;IACrB,qCAAqC;IACrC,aAAa,EAAE,OAAO,CAAC;CACxB;AAED,MAAM,WAAW,sBAAsB;IACrC,+BAA+B;IAC/B,gBAAgB,EAAE,sBAAsB,CAAC;IACzC,kDAAkD;IAClD,aAAa,EAAE,OAAO,CAAC;IACvB,+BAA+B;IAC/B,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAMD,qBAAa,iBAAiB;IAC5B,OAAO,CAAC,WAAW,CAAS;IAC5B,OAAO,CAAC,OAAO,CAA0B;IACzC,OAAO,CAAC,YAAY,CAAC,CAAmB;gBAE5B,OAAO,EAAE,uBAAuB;IAK5C;;;OAGG;IACG,qBAAqB,IAAI,OAAO,CAAC,sBAAsB,CAAC;IAwE9D;;;OAGG;IACG,uBAAuB,IAAI,OAAO,CAAC;QAAE,OAAO,EAAE,OAAO,CAAC;QAAC,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC;IAsE/E;;;OAGG;IACG,kBAAkB,IAAI,OAAO,CAAC;QAClC,yBAAyB,EAAE,OAAO,CAAC;QACnC,kBAAkB,EAAE,MAAM,CAAC;QAC3B,uBAAuB,EAAE,MAAM,EAAE,CAAC;KACnC,CAAC;IAaF;;;OAGG;YACW,wBAAwB;IAmBtC;;OAEG;YACW,eAAe;IAe7B;;OAEG;YACW,UAAU;CAoBzB;AAMD;;GAEG;AACH,wBAAgB,uBAAuB,CACrC,OAAO,EAAE,uBAAuB,GAC/B,iBAAiB,CAEnB;AAED;;;GAGG;AACH,wBAAsB,2BAA2B,CAC/C,WAAW,EAAE,MAAM,GAClB,OAAO,CAAC,sBAAsB,CAAC,CASjC;AAED;;;GAGG;AACH,wBAAsB,yBAAyB,CAC7C,WAAW,EAAE,MAAM,EACnB,OAAO,GAAE;IACP,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,cAAc,CAAC,EAAE,OAAO,CAAC;CACrB,GACL,OAAO,CAAC,sBAAsB,CAAC,CAOjC"}

package/v3/dist/init/fleet-integration.js

@@ -10,6 +10,7 @@ import chalk from 'chalk';
 import { existsSync } from 'fs';
 import { join } from 'path';
 import { toErrorMessage } from '../shared/error-utils.js';
+import { openDatabase } from '../shared/safe-db.js';
 // ============================================================================
 // Fleet Init Enhancer
 // ============================================================================
@@ -175,8 +176,7 @@ export class FleetInitEnhancer {
             return false;
         }
         try {
-            const Database = (await import('better-sqlite3')).default;
-            const db = new Database(dbPath);
+            const db = openDatabase(dbPath);
             const result = db.prepare(`
         SELECT COUNT(*) as count FROM kv_store
         WHERE namespace = 'code-intelligence:kg'
@@ -194,8 +194,7 @@ export class FleetInitEnhancer {
     async getKGEntryCount() {
         const dbPath = join(this.projectRoot, '.agentic-qe', 'memory.db');
         try {
-            const Database = (await import('better-sqlite3')).default;
-            const db = new Database(dbPath);
+            const db = openDatabase(dbPath);
             const result = db.prepare(`
         SELECT COUNT(*) as count FROM kv_store
         WHERE namespace LIKE 'code-intelligence:kg%'

package/v3/dist/init/fleet-integration.js.map

@@ -1 +1 @@
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package/v3/dist/init/init-wizard-hooks.d.ts

@@ -3,12 +3,19 @@
  *
  * Contains hook configuration, MCP server setup, and CLAUDE.md generation
  * logic used during AQE initialization. Extracted from init-wizard.ts.
+ *
+ * Uses shared settings-merge utilities to:
+ * - Detect and replace existing AQE hooks (no duplicates)
+ * - Preserve non-AQE hooks from the user's config
+ * - Add full env vars and v3 settings sections
  */
 import type { AQEInitConfig } from './types.js';
 /**
  * Configure Claude Code hooks.
  * Creates or updates .claude/settings.json with AQE hooks.
- * Uses Claude Code's actual environment variables ($TOOL_INPUT_*, $TOOL_SUCCESS, etc.)
+ *
+ * Smart merge: detects existing AQE/agentic-qe hooks and replaces them
+ * instead of appending duplicates. Non-AQE hooks are preserved.
  */
 export declare function configureHooks(projectRoot: string, config: AQEInitConfig): Promise<boolean>;
 /**

package/v3/dist/init/init-wizard-hooks.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"init-wizard-hooks.d.ts","sourceRoot":"","sources":["../../src/init/init-wizard-hooks.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAWH,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAMhD;;;;;;GAMG;AACH,wBAAsB,cAAc,CAAC,WAAW,EAAE,MAAM,EAAE,MAAM,EAAE,aAAa,GAAG,OAAO,CAAC,OAAO,CAAC,CAgLjG;AAsED;;;;GAIG;AACH,wBAAsB,YAAY,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAoCxE;AAMD;;;;GAIG;AACH,wBAAsB,gBAAgB,CAAC,WAAW,EAAE,MAAM,EAAE,MAAM,EAAE,aAAa,GAAG,OAAO,CAAC,OAAO,CAAC,CAmBnG"}