agentic-qe 3.6.10 → 3.6.12

package/v3/dist/planning/plan-executor.js

@@ -11,7 +11,7 @@
  * @module planning/plan-executor
  * @version 3.0.0
  */
-import Database from 'better-sqlite3';
+import { openDatabase } from '../shared/safe-db.js';
 import { randomUUID } from 'crypto';
 import { getUnifiedMemory } from '../kernel/unified-memory.js';
 import { toErrorMessage } from '../shared/error-utils.js';
@@ -72,7 +72,7 @@ export class PlanExecutor {
         // This allows async unified storage initialization
         if (!this.config.useUnified) {
             // Legacy mode: create separate database immediately
-            this.db = new Database(dbPath ?? ':memory:');
+            this.db = openDatabase(dbPath ?? ':memory:', { walMode: false });
             this.db.pragma('journal_mode = WAL');
         }
     }

package/v3/dist/planning/plan-executor.js.map

@@ -1 +1 @@
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package/v3/dist/shared/safe-db.d.ts

@@ -0,0 +1,32 @@
+/**
+ * Safe Database Opener
+ *
+ * ALL code that opens memory.db MUST use this utility instead of `new Database()` directly.
+ * This ensures WAL mode and busy_timeout are always set, preventing corruption from
+ * concurrent writers (e.g., multiple Claude Code hook processes hitting the DB simultaneously).
+ *
+ * Root cause: 40+ places in the codebase opened the DB with `new Database()` without
+ * WAL or busy_timeout. When multiple hook processes ran concurrently, the DB corrupted.
+ */
+import { type Database as DatabaseType } from 'better-sqlite3';
+export interface SafeDbOptions {
+    /** Open in read-only mode (default: false) */
+    readonly?: boolean;
+    /** File must already exist (default: false) */
+    fileMustExist?: boolean;
+    /** Busy timeout in ms (default: 5000) */
+    busyTimeout?: number;
+    /** Enable WAL mode (default: true for writable, false for readonly) */
+    walMode?: boolean;
+}
+/**
+ * Open a SQLite database with safe defaults that prevent corruption.
+ *
+ * Always sets:
+ * - journal_mode = WAL (for writable connections)
+ * - busy_timeout = 5000ms (waits instead of failing on lock contention)
+ *
+ * Use this instead of `new Database()` everywhere.
+ */
+export declare function openDatabase(dbPath: string, opts?: SafeDbOptions): DatabaseType;
+//# sourceMappingURL=safe-db.d.ts.map

package/v3/dist/shared/safe-db.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"safe-db.d.ts","sourceRoot":"","sources":["../../src/shared/safe-db.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAiB,EAAE,KAAK,QAAQ,IAAI,YAAY,EAAE,MAAM,gBAAgB,CAAC;AAEzE,MAAM,WAAW,aAAa;IAC5B,8CAA8C;IAC9C,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,+CAA+C;IAC/C,aAAa,CAAC,EAAE,OAAO,CAAC;IACxB,yCAAyC;IACzC,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,uEAAuE;IACvE,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAED;;;;;;;;GAQG;AACH,wBAAgB,YAAY,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,aAAa,GAAG,YAAY,CAuB/E"}

package/v3/dist/shared/safe-db.js

@@ -0,0 +1,41 @@
+/**
+ * Safe Database Opener
+ *
+ * ALL code that opens memory.db MUST use this utility instead of `new Database()` directly.
+ * This ensures WAL mode and busy_timeout are always set, preventing corruption from
+ * concurrent writers (e.g., multiple Claude Code hook processes hitting the DB simultaneously).
+ *
+ * Root cause: 40+ places in the codebase opened the DB with `new Database()` without
+ * WAL or busy_timeout. When multiple hook processes ran concurrently, the DB corrupted.
+ */
+import Database from 'better-sqlite3';
+/**
+ * Open a SQLite database with safe defaults that prevent corruption.
+ *
+ * Always sets:
+ * - journal_mode = WAL (for writable connections)
+ * - busy_timeout = 5000ms (waits instead of failing on lock contention)
+ *
+ * Use this instead of `new Database()` everywhere.
+ */
+export function openDatabase(dbPath, opts) {
+    const readonly = opts?.readonly ?? false;
+    const fileMustExist = opts?.fileMustExist ?? false;
+    const busyTimeout = opts?.busyTimeout ?? 5000;
+    const walMode = opts?.walMode ?? !readonly;
+    const db = new Database(dbPath, {
+        readonly,
+        fileMustExist,
+    });
+    // Always set busy_timeout — even for readonly connections.
+    // Without this, concurrent access gets SQLITE_BUSY immediately.
+    db.pragma(`busy_timeout = ${busyTimeout}`);
+    // WAL mode for writable connections prevents corruption from concurrent writers.
+    // Readonly connections inherit WAL from the DB file but we set it explicitly
+    // to be safe in case the DB was created without WAL.
+    if (walMode) {
+        db.pragma('journal_mode = WAL');
+    }
+    return db;
+}
+//# sourceMappingURL=safe-db.js.map

package/v3/dist/shared/safe-db.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"safe-db.js","sourceRoot":"","sources":["../../src/shared/safe-db.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,QAA2C,MAAM,gBAAgB,CAAC;AAazE;;;;;;;;GAQG;AACH,MAAM,UAAU,YAAY,CAAC,MAAc,EAAE,IAAoB;IAC/D,MAAM,QAAQ,GAAG,IAAI,EAAE,QAAQ,IAAI,KAAK,CAAC;IACzC,MAAM,aAAa,GAAG,IAAI,EAAE,aAAa,IAAI,KAAK,CAAC;IACnD,MAAM,WAAW,GAAG,IAAI,EAAE,WAAW,IAAI,IAAI,CAAC;IAC9C,MAAM,OAAO,GAAG,IAAI,EAAE,OAAO,IAAI,CAAC,QAAQ,CAAC;IAE3C,MAAM,EAAE,GAAG,IAAI,QAAQ,CAAC,MAAM,EAAE;QAC9B,QAAQ;QACR,aAAa;KACd,CAAC,CAAC;IAEH,2DAA2D;IAC3D,gEAAgE;IAChE,EAAE,CAAC,MAAM,CAAC,kBAAkB,WAAW,EAAE,CAAC,CAAC;IAE3C,iFAAiF;IACjF,6EAA6E;IAC7E,qDAAqD;IACrD,IAAI,OAAO,EAAE,CAAC;QACZ,EAAE,CAAC,MAAM,CAAC,oBAAoB,CAAC,CAAC;IAClC,CAAC;IAED,OAAO,EAAE,CAAC;AACZ,CAAC"}

package/v3/dist/sync/claude-flow-bridge.js

@@ -149,9 +149,9 @@ export async function syncClaudeFlowToAQE(options = {}) {
             console.log(`[DRY RUN] Would sync ${entries.size} entries`);
             return result;
         }
-        // Import better-sqlite3
-        const Database = (await import('better-sqlite3')).default;
-        const db = new Database(aqeDbPath);
+        // Import safe database opener
+        const { openDatabase } = await import('../shared/safe-db.js');
+        const db = openDatabase(aqeDbPath);
         try {
             db.pragma('journal_mode = WAL');
             // Prepare insert statements
@@ -274,8 +274,8 @@ export async function getSyncStatus(projectRoot) {
         const stats = fs.statSync(aqeDbPath);
         lastAqeUpdate = stats.mtime;
         try {
-            const Database = (await import('better-sqlite3')).default;
-            const db = new Database(aqeDbPath, { readonly: true });
+            const { openDatabase } = await import('../shared/safe-db.js');
+            const db = openDatabase(aqeDbPath, { readonly: true });
             const kvCount = db.prepare("SELECT COUNT(*) as count FROM kv_store WHERE key LIKE 'cf:%'").get();
             aqeKvEntries = kvCount?.count || 0;
             const sonaCount = db.prepare("SELECT COUNT(*) as count FROM sona_patterns").get();

package/v3/dist/sync/claude-flow-bridge.js.map

@@ -1 +1 @@
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package/v3/dist/sync/embeddings/sync-embedding-generator.js

@@ -8,7 +8,7 @@
 import { EmbeddingGenerator } from '../../integrations/embeddings/base/EmbeddingGenerator.js';
 import { resolve, dirname } from 'path';
 import { fileURLToPath } from 'url';
-import Database from 'better-sqlite3';
+import { openDatabase } from '../../shared/safe-db.js';
 import { validateTableName } from '../../shared/sql-safety.js';
 import { toErrorMessage } from '../../shared/error-utils.js';
 import { safeJsonParse } from '../../shared/safe-json.js';
@@ -82,7 +82,7 @@ export class SyncEmbeddingGenerator {
         };
         await this.initialize();
         // Open database
-        const db = new Database(this.dbPath, { readonly: false });
+        const db = openDatabase(this.dbPath);
         try {
             // Check if embedding column exists
             const columns = db.prepare(`PRAGMA table_info(${validateTableName(tableName)})`).all();
@@ -156,7 +156,7 @@ export class SyncEmbeddingGenerator {
             ? queryEmbedding.vector
             : Array.from(queryEmbedding.vector);
         // Get all patterns with embeddings
-        const db = new Database(this.dbPath, { readonly: true });
+        const db = openDatabase(this.dbPath, { readonly: true });
         try {
             const patterns = db
                 .prepare(`SELECT * FROM ${validateTableName(tableName)} WHERE embedding IS NOT NULL AND embedding != ''`)

package/v3/dist/sync/embeddings/sync-embedding-generator.js.map

@@ -1 +1 @@
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package/v3/dist/sync/readers/sqlite-reader.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"sqlite-reader.d.ts","sourceRoot":"","sources":["../../../src/sync/readers/sqlite-reader.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAKH,OAAO,KAAK,EAAE,UAAU,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAQ/D;;GAEG;AACH,MAAM,WAAW,kBAAkB;IACjC,2BAA2B;IAC3B,MAAM,EAAE,UAAU,CAAC;IAEnB,yCAAyC;IACzC,OAAO,EAAE,MAAM,CAAC;IAEhB,6BAA6B;IAC7B,WAAW,EAAE,MAAM,CAAC;CACrB;AAED;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC;CACxB;AAED;;GAEG;AACH,qBAAa,YAAa,YAAW,UAAU,CAAC,YAAY,CAAC;IAC3D,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,IAAI,EAAG,QAAQ,CAAU;IAElC,OAAO,CAAC,EAAE,CAA6B;IACvC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAqB;IAC5C,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAS;gBAEpB,MAAM,EAAE,kBAAkB;IAMtC;;OAEG;IACG,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IAwBjC;;OAEG;IACG,OAAO,IAAI,OAAO,CAAC,YAAY,EAAE,CAAC;IA0BxC;;OAEG;IACG,WAAW,CAAC,KAAK,EAAE,IAAI,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC;IA+BvD;;OAEG;IACG,KAAK,IAAI,OAAO,CAAC,MAAM,CAAC;IAoB9B;;OAEG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAQ5B;;OAEG;IACH,OAAO,CAAC,YAAY;IAgBpB;;OAEG;IACH,OAAO,CAAC,WAAW;IAenB;;OAEG;IACH,OAAO,CAAC,mBAAmB;IAwB3B;;OAEG;IACH,OAAO,CAAC,eAAe;IAwCvB;;OAEG;IACH,OAAO,CAAC,aAAa;IASrB;;OAEG;IACH,OAAO,IAAI;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,OAAO,CAAC;QAAC,MAAM,EAAE,MAAM,EAAE,CAAA;KAAE;CAkB/D;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,kBAAkB,GAAG,YAAY,CAE3E"}
+{"version":3,"file":"sqlite-reader.d.ts","sourceRoot":"","sources":["../../../src/sync/readers/sqlite-reader.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,KAAK,EAAE,UAAU,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAQ/D;;GAEG;AACH,MAAM,WAAW,kBAAkB;IACjC,2BAA2B;IAC3B,MAAM,EAAE,UAAU,CAAC;IAEnB,yCAAyC;IACzC,OAAO,EAAE,MAAM,CAAC;IAEhB,6BAA6B;IAC7B,WAAW,EAAE,MAAM,CAAC;CACrB;AAED;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC;CACxB;AAED;;GAEG;AACH,qBAAa,YAAa,YAAW,UAAU,CAAC,YAAY,CAAC;IAC3D,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,IAAI,EAAG,QAAQ,CAAU;IAElC,OAAO,CAAC,EAAE,CAA6B;IACvC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAqB;IAC5C,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAS;gBAEpB,MAAM,EAAE,kBAAkB;IAMtC;;OAEG;IACG,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IAwBjC;;OAEG;IACG,OAAO,IAAI,OAAO,CAAC,YAAY,EAAE,CAAC;IA0BxC;;OAEG;IACG,WAAW,CAAC,KAAK,EAAE,IAAI,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC;IA+BvD;;OAEG;IACG,KAAK,IAAI,OAAO,CAAC,MAAM,CAAC;IAoB9B;;OAEG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAQ5B;;OAEG;IACH,OAAO,CAAC,YAAY;IAgBpB;;OAEG;IACH,OAAO,CAAC,WAAW;IAenB;;OAEG;IACH,OAAO,CAAC,mBAAmB;IAwB3B;;OAEG;IACH,OAAO,CAAC,eAAe;IAwCvB;;OAEG;IACH,OAAO,CAAC,aAAa;IASrB;;OAEG;IACH,OAAO,IAAI;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,OAAO,CAAC;QAAC,MAAM,EAAE,MAAM,EAAE,CAAA;KAAE;CAkB/D;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,kBAAkB,GAAG,YAAY,CAE3E"}

package/v3/dist/sync/readers/sqlite-reader.js

@@ -4,7 +4,7 @@
  * Reads data from local SQLite databases for cloud sync.
  * Handles: memory.db (consolidated database)
  */
-import Database from 'better-sqlite3';
+import { openDatabase } from '../../shared/safe-db.js';
 import * as fs from 'fs';
 import * as path from 'path';
 import { validateTableName } from '../../shared/sql-safety.js';
@@ -38,7 +38,7 @@ export class SQLiteReader {
         }
         try {
             // Open read-only
-            this.db = new Database(this.dbPath, { readonly: true });
+            this.db = openDatabase(this.dbPath, { readonly: true });
             // Enable performance settings for reads
             this.db.pragma('journal_mode = WAL');
             this.db.pragma('synchronous = NORMAL');

package/v3/dist/sync/readers/sqlite-reader.js.map

@@ -1 +1 @@
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package/v3/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@agentic-qe/v3",
-  "version": "3.6.10",
+  "version": "3.6.12",
   "description": "Agentic QE v3 - Domain-Driven Design Architecture with 13 Bounded Contexts, O(log n) coverage analysis, ReasoningBank learning, 59 specialized QE agents",
   "type": "module",
   "main": "./dist/index.js",