agentdb 3.0.0-alpha.2 → 3.0.0-alpha.4

package/dist/src/controllers/index.d.ts

@@ -16,10 +16,12 @@ export { QUICServer } from './QUICServer.js';
 export { QUICClient } from './QUICClient.js';
 export { SyncCoordinator } from './SyncCoordinator.js';
 export { AttentionService } from './AttentionService.js';
-export { MemoryController } from './MemoryController.js';
-export { SelfAttentionController } from './attention/SelfAttentionController.js';
-export { CrossAttentionController } from './attention/CrossAttentionController.js';
-export { MultiHeadAttentionController } from './attention/MultiHeadAttentionController.js';
+export { CausalMemoryGraph } from './CausalMemoryGraph.js';
+export { CausalRecall } from './CausalRecall.js';
+export { ExplainableRecall } from './ExplainableRecall.js';
+export { NightlyLearner } from './NightlyLearner.js';
+export { LearningSystem } from './LearningSystem.js';
+export { ReasoningBank } from './ReasoningBank.js';
 export type { Episode, EpisodeWithEmbedding, ReflexionQuery } from './ReflexionMemory.js';
 export type { Skill, SkillLink, SkillQuery } from './SkillLibrary.js';
 export type { EmbeddingConfig } from './EmbeddingService.js';
@@ -33,8 +35,15 @@ export type { QUICServerConfig, SyncRequest, SyncResponse } from './QUICServer.j
 export type { QUICClientConfig, SyncOptions, SyncResult, SyncProgress } from './QUICClient.js';
 export type { SyncCoordinatorConfig, SyncState, SyncReport } from './SyncCoordinator.js';
 export type { AttentionConfig, AttentionResult, AttentionStats } from './AttentionService.js';
-export type { MemoryControllerConfig, Memory, SearchOptions, SearchResult, AttentionRetrievalResult } from './MemoryController.js';
-export type { SelfAttentionConfig, AttentionScore, SelfAttentionResult, SelfAttentionMemoryEntry } from './attention/index.js';
-export type { CrossAttentionConfig, CrossAttentionScore, CrossAttentionResult, ContextEntry } from './attention/index.js';
-export type { MultiHeadAttentionConfig, HeadAttentionOutput, MultiHeadAttentionResult, MultiHeadMemoryEntry } from './attention/index.js';
+export type { CausalEdge, CausalExperiment, CausalObservation, CausalQuery } from './CausalMemoryGraph.js';
+export type { CausalRecallResult, RerankConfig, RerankCandidate } from './CausalRecall.js';
+export type { RecallCertificate, MerkleProof, JustificationPath } from './ExplainableRecall.js';
+export type { LearnerConfig, LearnerReport } from './NightlyLearner.js';
+export type { ReasoningPattern, PatternSearchQuery, PatternStats } from './ReasoningBank.js';
+export type { LearningSession, LearningConfig, ActionPrediction, ActionFeedback, TrainingResult } from './LearningSystem.js';
+export { cosineSimilarity, batchCosineSimilarity, distanceToSimilarity, serializeEmbedding, deserializeEmbedding } from '../utils/vector-math.js';
+export { MutationGuard } from '../security/MutationGuard.js';
+export { AttestationLog } from '../security/AttestationLog.js';
+export type { MutationProof, MutationDenial, AttestationToken, GuardConfig } from '../security/MutationGuard.js';
+export { GuardedVectorBackend, ProofDeniedError } from '../backends/ruvector/GuardedVectorBackend.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/src/controllers/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/controllers/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAC3C,OAAO,EAAE,wBAAwB,EAAE,MAAM,+BAA+B,CAAC;AACzE,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAC7D,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAC7D,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAGzD,OAAO,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AAEnD,YAAY,EAAE,OAAO,EAAE,oBAAoB,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AAC1F,YAAY,EAAE,KAAK,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,mBAAmB,CAAC;AACtE,YAAY,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AAC7D,YAAY,EAAE,kBAAkB,EAAE,kBAAkB,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AACjG,YAAY,EAAE,UAAU,EAAE,gBAAgB,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAC9E,YAAY,EAAE,uBAAuB,EAAE,MAAM,+BAA+B,CAAC;AAC7E,YAAY,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,yBAAyB,CAAC;AACxE,YAAY,EAAE,aAAa,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AACjF,YAAY,EAAE,eAAe,EAAE,cAAc,EAAE,cAAc,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AACxG,YAAY,EAAE,gBAAgB,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,iBAAiB,CAAC;AACnF,YAAY,EAAE,gBAAgB,EAAE,WAAW,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,iBAAiB,CAAC;AAC/F,YAAY,EAAE,qBAAqB,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAC;AACzF,YAAY,EAAE,eAAe,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,uBAAuB,CAAC;AAG9F,YAAY,EAAE,UAAU,EAAE,gBAAgB,EAAE,iBAAiB,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAC3G,YAAY,EAAE,kBAAkB,EAAE,YAAY,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAC;AAC3F,YAAY,EAAE,iBAAiB,EAAE,WAAW,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAC;AAChG,YAAY,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACxE,YAAY,EAAE,gBAAgB,EAAE,kBAAkB,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAC7F,YAAY,EAAE,eAAe,EAAE,cAAc,EAAE,gBAAgB,EAAE,cAAc,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAE7H,OAAO,EAAE,gBAAgB,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,kBAAkB,EAAE,oBAAoB,EAAE,MAAM,yBAAyB,CAAC;AAGlJ,OAAO,EAAE,aAAa,EAAE,MAAM,8BAA8B,CAAC;AAC7D,OAAO,EAAE,cAAc,EAAE,MAAM,+BAA+B,CAAC;AAC/D,YAAY,EAAE,aAAa,EAAE,cAAc,EAAE,gBAAgB,EAAE,WAAW,EAAE,MAAM,8BAA8B,CAAC;AACjH,OAAO,EAAE,oBAAoB,EAAE,gBAAgB,EAAE,MAAM,8CAA8C,CAAC"}

package/dist/src/controllers/index.js

@@ -16,10 +16,16 @@ export { QUICServer } from './QUICServer.js';
 export { QUICClient } from './QUICClient.js';
 export { SyncCoordinator } from './SyncCoordinator.js';
 export { AttentionService } from './AttentionService.js';
-// Memory Controller with Attention Integration
-export { MemoryController } from './MemoryController.js';
-// Attention Controllers
-export { SelfAttentionController } from './attention/SelfAttentionController.js';
-export { CrossAttentionController } from './attention/CrossAttentionController.js';
-export { MultiHeadAttentionController } from './attention/MultiHeadAttentionController.js';
+// Controllers previously missing from barrel (ADR-060 Issue 3)
+export { CausalMemoryGraph } from './CausalMemoryGraph.js';
+export { CausalRecall } from './CausalRecall.js';
+export { ExplainableRecall } from './ExplainableRecall.js';
+export { NightlyLearner } from './NightlyLearner.js';
+export { LearningSystem } from './LearningSystem.js';
+export { ReasoningBank } from './ReasoningBank.js';
+export { cosineSimilarity, batchCosineSimilarity, distanceToSimilarity, serializeEmbedding, deserializeEmbedding } from '../utils/vector-math.js';
+// Security - Proof-Gated Mutation (ADR-060)
+export { MutationGuard } from '../security/MutationGuard.js';
+export { AttestationLog } from '../security/AttestationLog.js';
+export { GuardedVectorBackend, ProofDeniedError } from '../backends/ruvector/GuardedVectorBackend.js';
 //# sourceMappingURL=index.js.map

package/dist/src/controllers/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/controllers/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAC3C,OAAO,EAAE,wBAAwB,EAAE,MAAM,+BAA+B,CAAC;AACzE,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAC7D,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAC7D,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAEzD,+CAA+C;AAC/C,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAEzD,wBAAwB;AACxB,OAAO,EAAE,uBAAuB,EAAE,MAAM,wCAAwC,CAAC;AACjF,OAAO,EAAE,wBAAwB,EAAE,MAAM,yCAAyC,CAAC;AACnF,OAAO,EAAE,4BAA4B,EAAE,MAAM,6CAA6C,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/controllers/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAC3C,OAAO,EAAE,wBAAwB,EAAE,MAAM,+BAA+B,CAAC;AACzE,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAC7D,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAC7D,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAEzD,+DAA+D;AAC/D,OAAO,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AAwBnD,OAAO,EAAE,gBAAgB,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,kBAAkB,EAAE,oBAAoB,EAAE,MAAM,yBAAyB,CAAC;AAElJ,4CAA4C;AAC5C,OAAO,EAAE,aAAa,EAAE,MAAM,8BAA8B,CAAC;AAC7D,OAAO,EAAE,cAAc,EAAE,MAAM,+BAA+B,CAAC;AAE/D,OAAO,EAAE,oBAAoB,EAAE,gBAAgB,EAAE,MAAM,8CAA8C,CAAC"}

package/dist/src/core/AgentDB.d.ts

@@ -1,78 +1,46 @@
 /**
- * AgentDB - Main database wrapper class
+ * AgentDB v3 - Main database wrapper class
  *
- * Provides a unified interface to all AgentDB controllers with:
- * - sql.js WASM for relational storage (with better-sqlite3 fallback)
- * - RuVector for optimized vector search (150x faster than SQLite)
- * - Unified integration passing vector backend to all controllers
- *
- * Unified single-file mode (vectorBackend='rvf', the default):
- *   One sql.js Database instance holds BOTH relational tables (episodes,
- *   skills, causal edges — 21+ tables) AND vector tables (rvf_vectors,
- *   rvf_meta). Everything persists to a single .rvf file.
+ * Provides a unified interface to all AgentDB controllers with
+ * proof-gated mutations via MutationGuard and @ruvector/graph-transformer.
  */
-import { ReflexionMemory } from '../controllers/ReflexionMemory.js';
-import { SkillLibrary } from '../controllers/SkillLibrary.js';
-import { CausalMemoryGraph } from '../controllers/CausalMemoryGraph.js';
-import type { VectorBackend } from '../backends/VectorBackend.js';
-import type { IDatabaseConnection } from '../types/database.types.js';
+import Database from 'better-sqlite3';
+import type { MutationGuard } from '../security/MutationGuard.js';
+import { GraphTransformerService } from '../services/GraphTransformerService.js';
 export interface AgentDBConfig {
     dbPath?: string;
     namespace?: string;
+    dimension?: number;
+    maxElements?: number;
     enableAttention?: boolean;
-    attentionConfig?: Record<string, unknown>;
-    /** Force use of sql.js WASM even if better-sqlite3 is available */
-    forceWasm?: boolean;
-    /** Vector backend type: 'auto' | 'ruvector' | 'rvf' | 'hnswlib' */
-    vectorBackend?: 'auto' | 'ruvector' | 'rvf' | 'hnswlib';
-    /** Vector dimension (default: 384 for MiniLM) */
-    vectorDimension?: number;
+    attentionConfig?: Record<string, any>;
 }
 export declare class AgentDB {
     private db;
     private reflexion;
     private skills;
+    private reasoning;
     private causalGraph;
+    private causalRecall;
+    private learningSystem;
+    private explainableRecall;
+    private nightlyLearner;
     private embedder;
-    vectorBackend: VectorBackend;
+    private vectorBackend;
+    private guardedBackend;
+    private mutationGuard;
+    private attestationLog;
+    private graphTransformer;
+    private graphAdapter;
     private initialized;
     private config;
-    private usingWasm;
-    /** True when vectors + relational share one sql.js database */
-    private unifiedMode;
-    /** Reference to the rvf backend when in unified mode (for save/close) */
-    private rvfBackendRef;
     constructor(config?: AgentDBConfig);
     initialize(): Promise<void>;
-    /**
-     * Save the database to disk.
-     * In unified mode, delegates to SqlJsRvfBackend.save() which exports the
-     * entire database (vectors + relational) to a single .rvf file.
-     * In legacy mode, saves the relational database via the wrapper's save().
-     */
-    save(savePath?: string): Promise<void>;
-    /**
-     * Initialize database with automatic fallback:
-     * 1. Try better-sqlite3 (native, fastest)
-     * 2. Fallback to sql.js WASM (no build tools required)
-     */
-    private initializeDatabase;
-    /**
-     * Initialize sql.js WASM database
-     */
-    private initializeSqlJsWasm;
-    /**
-     * Load database schemas
-     */
-    private loadSchemas;
-    getController(name: string): ReflexionMemory | SkillLibrary | CausalMemoryGraph;
-    /**
-     * Close the database. In unified mode, auto-saves before closing.
-     */
+    getController(name: string): any;
+    getGraphAdapter(): any;
+    getGraphTransformer(): GraphTransformerService;
+    getMutationGuard(): MutationGuard | null;
     close(): Promise<void>;
-    get database(): IDatabaseConnection;
-    get isWasm(): boolean;
-    get isUnifiedMode(): boolean;
-    get vectorBackendName(): string;
+    get database(): Database.Database;
 }
 //# sourceMappingURL=AgentDB.d.ts.map

package/dist/src/core/AgentDB.d.ts.map

@@ -1 +1 @@
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package/dist/src/core/AgentDB.js

@@ -1,22 +1,21 @@
 /**
- * AgentDB - Main database wrapper class
+ * AgentDB v3 - Main database wrapper class
  *
- * Provides a unified interface to all AgentDB controllers with:
- * - sql.js WASM for relational storage (with better-sqlite3 fallback)
- * - RuVector for optimized vector search (150x faster than SQLite)
- * - Unified integration passing vector backend to all controllers
- *
- * Unified single-file mode (vectorBackend='rvf', the default):
- *   One sql.js Database instance holds BOTH relational tables (episodes,
- *   skills, causal edges — 21+ tables) AND vector tables (rvf_vectors,
- *   rvf_meta). Everything persists to a single .rvf file.
+ * Provides a unified interface to all AgentDB controllers with
+ * proof-gated mutations via MutationGuard and @ruvector/graph-transformer.
  */
+import Database from 'better-sqlite3';
 import { ReflexionMemory } from '../controllers/ReflexionMemory.js';
 import { SkillLibrary } from '../controllers/SkillLibrary.js';
+import { ReasoningBank } from '../controllers/ReasoningBank.js';
 import { CausalMemoryGraph } from '../controllers/CausalMemoryGraph.js';
+import { CausalRecall } from '../controllers/CausalRecall.js';
+import { LearningSystem } from '../controllers/LearningSystem.js';
+import { ExplainableRecall } from '../controllers/ExplainableRecall.js';
+import { NightlyLearner } from '../controllers/NightlyLearner.js';
 import { EmbeddingService } from '../controllers/EmbeddingService.js';
-import { createBackend } from '../backends/factory.js';
-import { SqlJsRvfBackend } from '../backends/rvf/SqlJsRvfBackend.js';
+import { createGuardedBackend } from '../backends/factory.js';
+import { GraphTransformerService } from '../services/GraphTransformerService.js';
 import * as fs from 'fs';
 import * as path from 'path';
 import { fileURLToPath } from 'url';
@@ -25,133 +24,95 @@ export class AgentDB {
     db;
     reflexion;
     skills;
+    reasoning;
     causalGraph;
+    causalRecall;
+    learningSystem;
+    explainableRecall;
+    nightlyLearner;
     embedder;
     vectorBackend;
+    guardedBackend = null;
+    mutationGuard = null;
+    attestationLog = null;
+    graphTransformer;
+    graphAdapter = null;
     initialized = false;
     config;
-    usingWasm = false;
-    /** True when vectors + relational share one sql.js database */
-    unifiedMode = false;
-    /** Reference to the rvf backend when in unified mode (for save/close) */
-    rvfBackendRef = null;
     constructor(config = {}) {
         this.config = config;
+        const dbPath = config.dbPath || ':memory:';
+        this.db = new Database(dbPath);
+        this.db.pragma('journal_mode = WAL');
     }
     async initialize() {
         if (this.initialized)
             return;
-        const dbPath = this.config.dbPath || ':memory:';
-        const vectorDimension = this.config.vectorDimension || 384;
-        const backendType = this.config.vectorBackend || 'rvf';
-        if (backendType === 'rvf') {
-            // ── Unified single-file mode ──
-            // One sql.js database for everything: vectors + relational tables
-            const rvfBackend = new SqlJsRvfBackend({
-                dimension: vectorDimension,
-                metric: 'cosine',
-                storagePath: dbPath,
-            });
-            await rvfBackend.initialize();
-            // Extract the raw sql.js database and wrap it with better-sqlite3 API
-            const rawDb = rvfBackend.getDatabase();
-            const { wrapExistingSqlJsDatabase } = await import('../db-fallback.js');
-            this.db = wrapExistingSqlJsDatabase(rawDb, dbPath);
-            this.vectorBackend = rvfBackend;
-            this.rvfBackendRef = rvfBackend;
-            this.unifiedMode = true;
-            this.usingWasm = true;
-            // Load relational schemas into the same database
-            await this.loadSchemas();
+        const dim = this.config.dimension ?? 384;
+        // Load schemas
+        const schemaPath = path.join(__dirname, '../../schemas/schema.sql');
+        if (fs.existsSync(schemaPath)) {
+            const schema = fs.readFileSync(schemaPath, 'utf-8');
+            this.db.exec(schema);
         }
-        else {
-            // ── Legacy separate-database mode ──
-            this.db = await this.initializeDatabase(dbPath);
-            await this.loadSchemas();
-            this.vectorBackend = await createBackend(backendType, {
-                dimensions: vectorDimension,
-                metric: 'cosine',
-            });
+        const frontierSchemaPath = path.join(__dirname, '../../schemas/frontier-schema.sql');
+        if (fs.existsSync(frontierSchemaPath)) {
+            const frontierSchema = fs.readFileSync(frontierSchemaPath, 'utf-8');
+            this.db.exec(frontierSchema);
         }
-        // Initialize embedder with default Xenova model
+        // Initialize embedder
         this.embedder = new EmbeddingService({
             model: 'Xenova/all-MiniLM-L6-v2',
-            dimension: vectorDimension,
-            provider: 'transformers',
+            dimension: dim,
+            provider: 'transformers'
         });
         await this.embedder.initialize();
-        // Initialize controllers WITH vector backend for optimized search
-        this.reflexion = new ReflexionMemory(this.db, this.embedder, this.vectorBackend);
-        this.skills = new SkillLibrary(this.db, this.embedder, this.vectorBackend);
-        this.causalGraph = new CausalMemoryGraph(this.db, undefined, // graphBackend
-        this.embedder, undefined, // config
-        this.vectorBackend);
-        this.initialized = true;
-        const mode = this.unifiedMode ? 'unified .rvf' : (this.usingWasm ? 'sql.js WASM' : 'better-sqlite3');
-        console.log(`[AgentDB] Initialized with ${mode} + ${this.vectorBackend.name} vector backend`);
-    }
-    /**
-     * Save the database to disk.
-     * In unified mode, delegates to SqlJsRvfBackend.save() which exports the
-     * entire database (vectors + relational) to a single .rvf file.
-     * In legacy mode, saves the relational database via the wrapper's save().
-     */
-    async save(savePath) {
-        if (!this.initialized) {
-            throw new Error('AgentDB not initialized. Call initialize() first.');
-        }
-        if (this.unifiedMode && this.rvfBackendRef) {
-            const target = savePath || this.config.dbPath || ':memory:';
-            await this.rvfBackendRef.save(target);
-        }
-        else if (this.db && typeof this.db.save === 'function') {
-            this.db.save();
-        }
-    }
-    /**
-     * Initialize database with automatic fallback:
-     * 1. Try better-sqlite3 (native, fastest)
-     * 2. Fallback to sql.js WASM (no build tools required)
-     */
-    async initializeDatabase(dbPath) {
-        if (this.config.forceWasm) {
-            return this.initializeSqlJsWasm(dbPath);
-        }
+        // Initialize GraphTransformerService (8 verified modules)
+        this.graphTransformer = new GraphTransformerService();
+        await this.graphTransformer.initialize();
+        // Initialize proof-gated vector backend (ADR-060)
+        let controllerVB = null;
         try {
-            const Database = (await import('better-sqlite3')).default;
-            const db = new Database(dbPath);
-            db.pragma('journal_mode = WAL');
-            this.usingWasm = false;
-            return db;
+            const { backend, guard, log } = await createGuardedBackend('auto', {
+                dimensions: dim,
+                metric: 'cosine',
+                maxElements: this.config.maxElements ?? 10000,
+                database: this.db,
+            });
+            this.guardedBackend = backend;
+            this.mutationGuard = guard;
+            this.attestationLog = log;
+            this.vectorBackend = backend;
+            controllerVB = backend;
         }
         catch {
-            console.log('[AgentDB] better-sqlite3 not available, using sql.js WASM');
-            return this.initializeSqlJsWasm(dbPath);
+            // Guarded backend unavailable — controllers work without vectorBackend
+            controllerVB = null;
         }
-    }
-    /**
-     * Initialize sql.js WASM database
-     */
-    async initializeSqlJsWasm(dbPath) {
-        const { createDatabase } = await import('../db-fallback.js');
-        const db = await createDatabase(dbPath);
-        this.usingWasm = true;
-        return db;
-    }
-    /**
-     * Load database schemas
-     */
-    async loadSchemas() {
-        const schemaPath = path.join(__dirname, '../../schemas/schema.sql');
-        if (fs.existsSync(schemaPath)) {
-            const schema = fs.readFileSync(schemaPath, 'utf-8');
-            this.db.exec(schema);
+        // Initialize controllers — wire vectorBackend where supported
+        this.reflexion = new ReflexionMemory(this.db, this.embedder, controllerVB ?? undefined);
+        this.skills = new SkillLibrary(this.db, this.embedder, controllerVB ?? undefined);
+        this.reasoning = new ReasoningBank(this.db, this.embedder, controllerVB ?? undefined);
+        this.causalGraph = new CausalMemoryGraph(this.db);
+        this.causalRecall = new CausalRecall(this.db, this.embedder);
+        this.learningSystem = new LearningSystem(this.db, this.embedder);
+        this.explainableRecall = new ExplainableRecall(this.db, this.embedder);
+        this.nightlyLearner = new NightlyLearner(this.db, this.embedder);
+        // Initialize optional graph database adapter
+        try {
+            const { GraphDatabaseAdapter } = await import('../backends/graph/GraphDatabaseAdapter.js');
+            const storagePath = this.config.dbPath && this.config.dbPath !== ':memory:'
+                ? this.config.dbPath.replace(/\.db$/, '') + '.graph'
+                : null;
+            if (storagePath) {
+                this.graphAdapter = new GraphDatabaseAdapter({ storagePath, dimensions: dim }, this.embedder);
+                await this.graphAdapter.initialize();
+            }
         }
-        const frontierSchemaPath = path.join(__dirname, '../../schemas/frontier-schema.sql');
-        if (fs.existsSync(frontierSchemaPath)) {
-            const frontierSchema = fs.readFileSync(frontierSchemaPath, 'utf-8');
-            this.db.exec(frontierSchema);
+        catch {
+            this.graphAdapter = null;
         }
+        this.initialized = true;
     }
     getController(name) {
         if (!this.initialized) {
@@ -163,41 +124,58 @@ export class AgentDB {
                 return this.reflexion;
             case 'skills':
                 return this.skills;
+            case 'reasoning':
+            case 'reasoningBank':
+                return this.reasoning;
             case 'causal':
             case 'causalGraph':
                 return this.causalGraph;
+            case 'causalRecall':
+                return this.causalRecall;
+            case 'learning':
+            case 'learningSystem':
+                return this.learningSystem;
+            case 'explainableRecall':
+                return this.explainableRecall;
+            case 'nightlyLearner':
+                return this.nightlyLearner;
+            case 'graph':
+            case 'graphAdapter':
+                return this.graphAdapter;
+            case 'graphTransformer':
+                return this.graphTransformer;
+            case 'mutationGuard':
+                return this.mutationGuard;
+            case 'attestationLog':
+                return this.attestationLog;
+            case 'vectorBackend':
+                return this.vectorBackend;
             default:
                 throw new Error(`Unknown controller: ${name}`);
         }
     }
-    /**
-     * Close the database. In unified mode, auto-saves before closing.
-     */
+    getGraphAdapter() {
+        return this.graphAdapter;
+    }
+    getGraphTransformer() {
+        return this.graphTransformer;
+    }
+    getMutationGuard() {
+        return this.mutationGuard;
+    }
     async close() {
-        if (this.unifiedMode && this.rvfBackendRef) {
-            // rvfBackendRef.close() flushes pending writes, auto-saves, and closes
-            this.rvfBackendRef.close();
-            this.rvfBackendRef = null;
+        if (this.vectorBackend) {
+            try {
+                this.vectorBackend.close();
+            }
+            catch { /* ignore */ }
         }
-        else if (this.db) {
+        if (this.db) {
             this.db.close();
         }
     }
-    // Expose database for advanced usage
     get database() {
         return this.db;
     }
-    // Check if using WASM backend
-    get isWasm() {
-        return this.usingWasm;
-    }
-    // Check if running in unified single-file mode
-    get isUnifiedMode() {
-        return this.unifiedMode;
-    }
-    // Get vector backend info
-    get vectorBackendName() {
-        return this.vectorBackend?.name || 'none';
-    }
 }
 //# sourceMappingURL=AgentDB.js.map

package/dist/src/core/AgentDB.js.map

@@ -1 +1 @@
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package/dist/src/db-fallback.d.ts

@@ -13,16 +13,7 @@ export declare function getDatabaseImplementation(): Promise<any>;
 /**
  * Create a database instance using sql.js
  */
-export declare function createDatabase(filename: string, options?: unknown): Promise<any>;
-/**
- * Wrap an EXISTING sql.js raw database with the better-sqlite3-compatible API.
- * Used by AgentDB unified mode to share one sql.js Database instance for both
- * vector (rvf) and relational tables in a single .rvf file.
- *
- * Unlike createDatabase(), this does NOT create a new SQL.Database — it wraps
- * the one already held by SqlJsRvfBackend.
- */
-export declare function wrapExistingSqlJsDatabase(rawDb: any, filename?: string): any;
+export declare function createDatabase(filename: string, options?: any): Promise<any>;
 /**
  * Get information about current database implementation
  */

package/dist/src/db-fallback.d.ts.map

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