npm - agentdb - Versions diffs - 3.0.0-alpha.2 → 3.0.0-alpha.4 - Mend

agentdb 3.0.0-alpha.2 → 3.0.0-alpha.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1038) hide show

package/dist/src/controllers/CausalMemoryGraph.js CHANGED Viewed

@@ -15,34 +15,24 @@
  * - Feature flag: ENABLE_HYPERBOLIC_ATTENTION (default: false)
  * - 100% backward compatible with fallback to standard retrieval
  */
-import { normalizeRowId } from '../types/database.types.js';
 import { NodeIdMapper } from '../utils/NodeIdMapper.js';
-import { AttentionService } from '../services/AttentionService.js';
+import { AttentionService } from '../utils/LegacyAttentionAdapter.js';
 export class CausalMemoryGraph {
     db;
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any -- GraphBackend or GraphDatabaseAdapter, type varies at runtime
-    graphBackend;
+    graphBackend; // GraphBackend or GraphDatabaseAdapter
     attentionService;
     embedder;
-    vectorBackend;
     config;
     /**
      * Constructor supports both v1 (legacy) and v2 (with attention) modes
      *
      * v1 mode: new CausalMemoryGraph(db)
-     * v2 mode: new CausalMemoryGraph(db, graphBackend, embedder, config, vectorBackend)
-     *
-     * @param db - Database connection
-     * @param graphBackend - Optional graph database adapter
-     * @param embedder - Optional embedding service for generating embeddings
-     * @param config - Optional configuration for hyperbolic attention
-     * @param vectorBackend - Optional vector backend for optimized similarity search (150x faster than SQLite)
+     * v2 mode: new CausalMemoryGraph(db, graphBackend, embedder, config)
      */
-    constructor(db, graphBackend, embedder, config, vectorBackend) {
+    constructor(db, graphBackend, embedder, config) {
         this.db = db;
         this.graphBackend = graphBackend;
         this.embedder = embedder;
-        this.vectorBackend = vectorBackend;
         this.config = {
             ENABLE_HYPERBOLIC_ATTENTION: false,
             ...config,
@@ -59,24 +49,14 @@ export class CausalMemoryGraph {
     }
     /**
      * Add a causal edge between memories
-     *
-     * When vectorBackend is available, stores the edge embedding for fast similarity search.
-     * This enables finding similar causal patterns across the memory graph.
      */
     async addCausalEdge(edge) {
-        // Create embedding for causal mechanism if embedder is available
-        const mechanismText = edge.mechanism || `${edge.fromMemoryType}-${edge.toMemoryType} causal link`;
-        let embedding;
-        if (this.embedder) {
-            embedding = await this.embedder.embed(mechanismText);
-        }
-        else {
-            // Fallback to zero embedding if no embedder available
-            embedding = new Float32Array(384).fill(0);
-        }
         // Use GraphDatabaseAdapter if available (AgentDB v2)
-        if (this.graphBackend && typeof this.graphBackend === 'object' && 'createCausalEdge' in this.graphBackend) {
+        if (this.graphBackend && 'createCausalEdge' in this.graphBackend) {
             const graphAdapter = this.graphBackend;
+            // Create embedding for causal mechanism
+            const mechanismText = edge.mechanism || `${edge.fromMemoryType}-${edge.toMemoryType} causal link`;
+            const embedding = new Float32Array(384).fill(0); // Placeholder - would use embedder in production
             // Convert episode IDs to string format expected by graph database
             // Use NodeIdMapper to get full node IDs from numeric IDs
             const mapper = NodeIdMapper.getInstance();
@@ -114,20 +94,7 @@ export class CausalMemoryGraph {
       ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
     `);
         const result = stmt.run(edge.fromMemoryId, edge.fromMemoryType, edge.toMemoryId, edge.toMemoryType, edge.similarity, edge.uplift || null, edge.confidence, edge.sampleSize || null, edge.evidenceIds ? JSON.stringify(edge.evidenceIds) : null, edge.confounderScore || null, edge.mechanism || null, edge.metadata ? JSON.stringify(edge.metadata) : null);
-        const edgeId = normalizeRowId(result.lastInsertRowid);
-        // Store embedding in VectorBackend for fast similarity search
-        if (this.vectorBackend && embedding) {
-            this.vectorBackend.insert(`causal-edge:${edgeId}`, embedding, {
-                fromMemoryId: edge.fromMemoryId,
-                fromMemoryType: edge.fromMemoryType,
-                toMemoryId: edge.toMemoryId,
-                toMemoryType: edge.toMemoryType,
-                mechanism: mechanismText,
-                confidence: edge.confidence,
-                uplift: edge.uplift,
-            });
-        }
-        return edgeId;
+        return result.lastInsertRowid;
     }
     /**
      * Create a causal experiment (A/B test)
@@ -140,7 +107,7 @@ export class CausalMemoryGraph {
       ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)
     `);
         const result = stmt.run(experiment.name, experiment.hypothesis, experiment.treatmentId, experiment.treatmentType, experiment.controlId || null, experiment.startTime, experiment.sampleSize, experiment.status, experiment.metadata ? JSON.stringify(experiment.metadata) : null);
-        return normalizeRowId(result.lastInsertRowid);
+        return result.lastInsertRowid;
     }
     /**
      * Record an observation in an experiment
@@ -237,50 +204,6 @@ export class CausalMemoryGraph {
         const rows = this.db.prepare(sql).all(...params);
         return rows.map(row => this.rowToCausalEdge(row));
     }
-    /**
-     * Find similar causal patterns using vector similarity search
-     *
-     * Uses vectorBackend for fast similarity search (150x faster than SQLite).
-     * This enables discovering analogous causal relationships across different
-     * domains or contexts.
-     *
-     * @param mechanism - The causal mechanism description to search for
-     * @param k - Number of similar patterns to return (default: 10)
-     * @param minConfidence - Minimum confidence threshold (default: 0.5)
-     * @returns Similar causal edges with similarity scores
-     */
-    async findSimilarCausalPatterns(mechanism, k = 10, minConfidence = 0.5) {
-        // If no embedder or vectorBackend, return empty array
-        if (!this.embedder || !this.vectorBackend) {
-            return [];
-        }
-        // Generate embedding for the query mechanism
-        const queryEmbedding = await this.embedder.embed(mechanism);
-        // Search for similar causal edges using vectorBackend
-        const results = this.vectorBackend.search(queryEmbedding, k * 2); // Get more to filter by confidence
-        // Filter results to only causal-edge entries and by confidence
-        const filteredResults = results.filter(result => {
-            if (!result.id.startsWith('causal-edge:'))
-                return false;
-            const confidence = result.metadata?.confidence;
-            return confidence === undefined || confidence >= minConfidence;
-        });
-        // Get full edge data from database
-        const edges = [];
-        for (const result of filteredResults.slice(0, k)) {
-            const edgeId = parseInt(result.id.replace('causal-edge:', ''), 10);
-            if (isNaN(edgeId))
-                continue;
-            const row = this.db.prepare('SELECT * FROM causal_edges WHERE id = ?').get(edgeId);
-            if (row) {
-                edges.push({
-                    ...this.rowToCausalEdge(row),
-                    similarity: result.similarity
-                });
-            }
-        }
-        return edges;
-    }
     /**
      * Get causal chain (multi-hop reasoning)
      *
@@ -559,13 +482,13 @@ export class CausalMemoryGraph {
             toMemoryId: row.to_memory_id,
             toMemoryType: row.to_memory_type,
             similarity: row.similarity,
-            uplift: row.uplift ?? undefined,
+            uplift: row.uplift,
             confidence: row.confidence,
-            sampleSize: row.sample_size ?? undefined,
+            sampleSize: row.sample_size,
             evidenceIds: row.evidence_ids ? JSON.parse(row.evidence_ids) : undefined,
-            experimentIds: undefined, // Not in DatabaseRows.CausalEdge
-            confounderScore: row.confounder_score ?? undefined,
-            mechanism: row.mechanism ?? undefined,
+            experimentIds: row.experiment_ids ? JSON.parse(row.experiment_ids) : undefined,
+            confounderScore: row.confounder_score,
+            mechanism: row.mechanism,
             metadata: row.metadata ? JSON.parse(row.metadata) : undefined
         };
     }
@@ -584,7 +507,7 @@ export class CausalMemoryGraph {
         // This is an approximation
         return 0.5 + 0.5 * Math.sign(t) * (1 - Math.pow(1 + t * t / df, -df / 2));
     }
-    tInverse(_p, _df) {
+    tInverse(p, df) {
         // Simplified inverse t-distribution (use proper stats library)
         // Approximation for 95% CI
         return 1.96; // Standard normal approximation

package/dist/src/controllers/CausalMemoryGraph.js.map CHANGED Viewed

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package/dist/src/controllers/CausalRecall.d.ts CHANGED Viewed

@@ -12,7 +12,7 @@
  * - Explainable provenance
  * - Policy compliance
  */
-import type { IDatabaseConnection } from '../types/database.types.js';
+type Database = any;
 import { RecallCertificate } from './ExplainableRecall.js';
 import { EmbeddingService } from './EmbeddingService.js';
 import type { VectorBackend } from '../backends/VectorBackend.js';
@@ -52,7 +52,7 @@ export declare class CausalRecall {
     private explainableRecall;
     private embedder;
     private vectorBackend?;
-    constructor(db: IDatabaseConnection, embedder: EmbeddingService, vectorBackend?: VectorBackend, config?: RerankConfig);
+    constructor(db: Database, embedder: EmbeddingService, vectorBackend?: VectorBackend, config?: RerankConfig);
     /**
      * Main recall function with utility-based reranking and certificate issuance
      *
@@ -88,10 +88,6 @@ export declare class CausalRecall {
      * Deserialize embedding from Buffer
      */
     private deserializeEmbedding;
-    /**
-     * Cosine similarity between two vectors
-     */
-    private cosineSimilarity;
     /**
      * Batch recall for multiple queries
      */
@@ -135,4 +131,5 @@ export declare class CausalRecall {
         utilityScore: number;
     }>>;
 }
+export {};
 //# sourceMappingURL=CausalRecall.d.ts.map

package/dist/src/controllers/CausalRecall.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/src/controllers/CausalRecall.js CHANGED Viewed

@@ -14,7 +14,7 @@
  */
 import { CausalMemoryGraph } from './CausalMemoryGraph.js';
 import { ExplainableRecall } from './ExplainableRecall.js';
-import { cosineSimilarity } from '../utils/similarity.js';
+import { cosineSimilarity } from '../utils/vector-math.js';
 export class CausalRecall {
     config;
     db;
@@ -109,7 +109,7 @@ export class CausalRecall {
         FROM episodes
         WHERE id IN (${placeholders})
       `).all(...episodeIds);
-            const episodeMap = new Map(episodes.map((e) => [String(e.id), e]));
+            const episodeMap = new Map(episodes.map((e) => [e.id, e]));
             return searchResults.map(result => {
                 const ep = episodeMap.get(result.id);
                 return {
@@ -138,7 +138,7 @@ export class CausalRecall {
         for (const ep of episodes) {
             const episodeRow = ep;
             const embedding = this.deserializeEmbedding(episodeRow.embedding);
-            const similarity = this.cosineSimilarity(queryEmbedding, embedding);
+            const similarity = cosineSimilarity(queryEmbedding, embedding);
             results.push({
                 id: episodeRow.id.toString(),
                 type: episodeRow.type,
@@ -263,12 +263,6 @@ export class CausalRecall {
     deserializeEmbedding(buffer) {
         return new Float32Array(buffer.buffer, buffer.byteOffset, buffer.length / 4);
     }
-    /**
-     * Cosine similarity between two vectors
-     */
-    cosineSimilarity(a, b) {
-        return cosineSimilarity(a, b);
-    }
     /**
      * Batch recall for multiple queries
      */
@@ -293,10 +287,10 @@ export class CausalRecall {
       FROM recall_certificates
     `).get();
         return {
-            totalCausalEdges: causalEdges?.count ?? 0,
-            totalCertificates: certificates?.count ?? 0,
-            avgRedundancyRatio: avgStats?.avg_redundancy ?? 0,
-            avgCompletenessScore: avgStats?.avg_completeness ?? 0
+            totalCausalEdges: causalEdges.count,
+            totalCertificates: certificates.count,
+            avgRedundancyRatio: avgStats?.avg_redundancy || 0,
+            avgCompletenessScore: avgStats?.avg_completeness || 0
         };
     }
     /**
@@ -312,7 +306,7 @@ export class CausalRecall {
      * @returns Array of ranked search results with similarity and causal uplift scores
      */
     async search(params) {
-        const { query, k = 12, alpha = this.config.alpha, beta = this.config.beta, gamma = this.config.gamma } = params;
+        const { query, k = 12, includeEvidence = false, alpha = this.config.alpha, beta = this.config.beta, gamma = this.config.gamma } = params;
         // Temporarily override config for this search
         const originalConfig = { ...this.config };
         this.config = { ...this.config, alpha, beta, gamma };

package/dist/src/controllers/CausalRecall.js.map CHANGED Viewed

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package/dist/src/controllers/ContextSynthesizer.d.ts CHANGED Viewed

@@ -13,7 +13,7 @@ export interface MemoryPattern {
     input?: string;
     output?: string;
     similarity?: number;
-    [key: string]: unknown;
+    [key: string]: any;
 }
 export interface SynthesizedContext {
     summary: string;

package/dist/src/controllers/ContextSynthesizer.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/src/controllers/EmbeddingService.d.ts.map CHANGED Viewed

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package/dist/src/controllers/EmbeddingService.js CHANGED Viewed

@@ -6,8 +6,7 @@
  */
 export class EmbeddingService {
     config;
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any -- transformers.js pipeline has no exported type
-    pipeline;
+    pipeline; // transformers.js pipeline
     cache;
     constructor(config) {
         this.config = config;
@@ -37,13 +36,7 @@ export class EmbeddingService {
                 const errorMessage = error instanceof Error ? error.message : String(error);
                 console.warn(`⚠️  Transformers.js initialization failed: ${errorMessage}`);
                 console.warn('   Falling back to mock embeddings for testing');
-                console.warn('   This is normal if:');
-                console.warn('     • Running offline/without internet access');
-                console.warn('     • Model not yet downloaded (~90MB on first use)');
-                console.warn('     • Network connectivity issues');
-                console.warn('   To use real embeddings:');
-                console.warn('     • Ensure internet connectivity for first-time model download');
-                console.warn('     • Or pre-download: npx agentdb install-embeddings');
+                console.warn('   Set HUGGINGFACE_API_KEY environment variable for real embeddings');
                 this.pipeline = null;
             }
         }
@@ -115,7 +108,7 @@ export class EmbeddingService {
         const embedding = new Float32Array(this.config.dimension);
         // Handle null/undefined/empty text
         if (!text || text.length === 0) {
-            return new Float32Array(this.config.dimension);
+            return new Array(this.config.dimension).fill(0);
         }
         // Use simple hash-based generation
         let hash = 0;

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package/dist/src/controllers/EnhancedEmbeddingService.d.ts CHANGED Viewed

@@ -42,9 +42,5 @@ export declare class EnhancedEmbeddingService extends EmbeddingService {
         wasmEnabled: boolean;
         simdEnabled: boolean;
     };
-    /**
-     * Cosine similarity fallback
-     */
-    private cosineSimilarity;
 }
 //# sourceMappingURL=EnhancedEmbeddingService.d.ts.map

package/dist/src/controllers/EnhancedEmbeddingService.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"EnhancedEmbeddingService.d.ts","sourceRoot":"","sources":["../../../src/controllers/EnhancedEmbeddingService.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,gBAAgB,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;~~AAK1E~~,MAAM,WAAW,uBAAwB,SAAQ,eAAe;IAC9D,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,qBAAqB,CAAC,EAAE,OAAO,CAAC;IAChC,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,qBAAa,wBAAyB,SAAQ,gBAAgB;IAC5D,OAAO,CAAC,UAAU,CAAiC;IACnD,OAAO,CAAC,cAAc,CAA0B;gBAEpC,MAAM,EAAE,uBAAuB;IAc3C;;OAEG;IACH,OAAO,CAAC,cAAc;IAYtB;;OAEG;IACG,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC;IAsB1D;;OAEG;IACG,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAc/D;;OAEG;IACG,eAAe,CACnB,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,MAAM,EAAE,EAChB,CAAC,GAAE,MAAU,GACZ,OAAO,CAAC,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IA0BtE;;OAEG;IACH,QAAQ,IAAI;QACV,SAAS,EAAE,MAAM,CAAC;QAClB,WAAW,EAAE,OAAO,CAAC;QACrB,WAAW,EAAE,OAAO,CAAC;KACtB;~~IAWD;;OAEG;IACH,OAAO,CAAC,gBAAgB;CAGzB~~"}
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package/dist/src/controllers/EnhancedEmbeddingService.js CHANGED Viewed

@@ -6,7 +6,7 @@
  */
 import { EmbeddingService } from './EmbeddingService.js';
 import { WASMVectorSearch } from './WASMVectorSearch.js';
-import { cosineSimilarity } from '../utils/similarity.js';
+import { cosineSimilarity } from '../utils/vector-math.js';
 export class EnhancedEmbeddingService extends EmbeddingService {
     wasmSearch = null;
     enhancedConfig;
@@ -65,7 +65,7 @@ export class EnhancedEmbeddingService extends EmbeddingService {
             return this.wasmSearch.cosineSimilarity(embeddingA, embeddingB);
         }
         // Fallback to manual calculation
-        return this.cosineSimilarity(embeddingA, embeddingB);
+        return cosineSimilarity(embeddingA, embeddingB);
     }
     /**
      * Find most similar texts from a corpus
@@ -78,7 +78,7 @@ export class EnhancedEmbeddingService extends EmbeddingService {
             similarities = this.wasmSearch.batchSimilarity(queryEmbedding, corpusEmbeddings);
         }
         else {
-            similarities = corpusEmbeddings.map(emb => this.cosineSimilarity(queryEmbedding, emb));
+            similarities = corpusEmbeddings.map(emb => cosineSimilarity(queryEmbedding, emb));
         }
         // Create results with indices
         const results = corpus.map((text, index) => ({
@@ -96,17 +96,10 @@ export class EnhancedEmbeddingService extends EmbeddingService {
     getStats() {
         const wasmStats = this.wasmSearch?.getStats();
         return {
-            // eslint-disable-next-line @typescript-eslint/no-explicit-any -- accessing parent's private cache property
             cacheSize: this.cache.size,
             wasmEnabled: wasmStats?.wasmAvailable ?? false,
             simdEnabled: wasmStats?.simdAvailable ?? false,
         };
     }
-    /**
-     * Cosine similarity fallback
-     */
-    cosineSimilarity(a, b) {
-        return cosineSimilarity(a, b);
-    }
 }
 //# sourceMappingURL=EnhancedEmbeddingService.js.map

package/dist/src/controllers/EnhancedEmbeddingService.js.map CHANGED Viewed

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package/dist/src/controllers/ExplainableRecall.d.ts CHANGED Viewed

@@ -17,8 +17,8 @@
  * - Feature flag: ENABLE_GRAPH_ROPE (default: false)
  * - 100% backward compatible with fallback to standard retrieval
  */
-import type { IDatabaseConnection } from '../types/database.types.js';
-import { type GraphRoPEConfig } from '../services/AttentionService.js';
+type Database = any;
+import { type GraphRoPEConfig } from '../utils/LegacyAttentionAdapter.js';
 import { EmbeddingService } from './EmbeddingService.js';
 /**
  * Configuration for ExplainableRecall
@@ -45,7 +45,7 @@ export interface RecallCertificate {
     policyVersion?: string;
     accessLevel: 'public' | 'internal' | 'confidential' | 'restricted';
     latencyMs?: number;
-    metadata?: Record<string, unknown>;
+    metadata?: Record<string, any>;
 }
 export interface MerkleProof {
     hash: string;
@@ -66,7 +66,7 @@ export interface ProvenanceSource {
     parentHash?: string;
     derivedFrom?: string[];
     creator?: string;
-    metadata?: Record<string, unknown>;
+    metadata?: Record<string, any>;
 }
 export declare class ExplainableRecall {
     private db;
@@ -79,7 +79,7 @@ export declare class ExplainableRecall {
      * v1 mode: new ExplainableRecall(db)
      * v2 mode: new ExplainableRecall(db, embedder, config)
      */
-    constructor(db: IDatabaseConnection, embedder?: EmbeddingService, config?: ExplainableRecallConfig);
+    constructor(db: Database, embedder?: EmbeddingService, config?: ExplainableRecallConfig);
     /**
      * Create a recall certificate for a retrieval operation
      *
@@ -189,4 +189,5 @@ export declare class ExplainableRecall {
      */
     private determineReason;
 }
+export {};
 //# sourceMappingURL=ExplainableRecall.d.ts.map