agentdb 3.0.0-alpha.11 → 3.0.0-alpha.13

package/dist/src/db-fallback.js

@@ -47,6 +47,13 @@ function createSqlJsWrapper(SQL) {
         filename;
         // eslint-disable-next-line @typescript-eslint/no-explicit-any -- sql.js Statement instances
         activeStatements = new Map();
+        // Cache wrappers by SQL text so repeated db.prepare(sameSql) returns the
+        // same underlying sql.js Statement and doesn't add a new entry to
+        // activeStatements. Without this, callers using the
+        // db.prepare(sql).run(...)-and-discard pattern (idiomatic in
+        // better-sqlite3, where V8 GCs the handle) leak forever under sql.js.
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any -- prepared-statement wrapper objects
+        statementCache = new Map();
         statementCounter = 0;
         intervalId = null;
         constructor(filename, _options) {
@@ -79,12 +86,28 @@ function createSqlJsWrapper(SQL) {
             }, 10000);
         }
         prepare(sql) {
+            // Reuse the cached wrapper for an identical SQL string. The cache owns
+            // the underlying stmt's lifetime; finalize() is a no-op on a cached
+            // wrapper so concurrent callers that all called prepare(sql) keep
+            // working. close() drops everything.
+            const cached = this.statementCache.get(sql);
+            if (cached)
+                return cached;
             const stmt = this.db.prepare(sql);
             let isFinalized = false;
             const stmtId = ++this.statementCounter;
+            const self = this;
             // Track active statement
             this.activeStatements.set(stmtId, stmt);
-            return {
+            const evictOnError = () => {
+                if (!isFinalized) {
+                    stmt.free();
+                    isFinalized = true;
+                    self.activeStatements.delete(stmtId);
+                    self.statementCache.delete(sql);
+                }
+            };
+            const wrapper = {
                 // eslint-disable-next-line @typescript-eslint/no-explicit-any -- sql.js bind accepts heterogeneous params
                 run: (...params) => {
                     if (isFinalized)
@@ -99,12 +122,7 @@ function createSqlJsWrapper(SQL) {
                         };
                     }
                     catch (error) {
-                        // Auto-free on error to prevent memory leak
-                        if (!isFinalized) {
-                            stmt.free();
-                            isFinalized = true;
-                            this.activeStatements.delete(stmtId);
-                        }
+                        evictOnError();
                         throw error;
                     }
                 },
@@ -129,12 +147,7 @@ function createSqlJsWrapper(SQL) {
                         return result;
                     }
                     catch (error) {
-                        // Auto-free on error to prevent memory leak
-                        if (!isFinalized) {
-                            stmt.free();
-                            isFinalized = true;
-                            this.activeStatements.delete(stmtId);
-                        }
+                        evictOnError();
                         throw error;
                     }
                 },
@@ -158,23 +171,18 @@ function createSqlJsWrapper(SQL) {
                         return results;
                     }
                     catch (error) {
-                        // Auto-free on error to prevent memory leak
-                        if (!isFinalized) {
-                            stmt.free();
-                            isFinalized = true;
-                            this.activeStatements.delete(stmtId);
-                        }
+                        evictOnError();
                         throw error;
                     }
                 },
                 finalize: () => {
-                    if (!isFinalized) {
-                        stmt.free();
-                        isFinalized = true;
-                        this.activeStatements.delete(stmtId);
-                    }
+                    // No-op while cached: the wrapper is shared and finalize() must not
+                    // tear out a stmt another caller is about to use. close() handles
+                    // the real teardown.
                 }
             };
+            this.statementCache.set(sql, wrapper);
+            return wrapper;
         }
         exec(sql) {
             return this.db.exec(sql);
@@ -213,6 +221,7 @@ function createSqlJsWrapper(SQL) {
                 }
             }
             this.activeStatements.clear();
+            this.statementCache.clear();
             // Save to file before closing
             this.save();
             this.db.close();
@@ -271,14 +280,28 @@ export async function createDatabase(filename, options) {
 export function wrapExistingSqlJsDatabase(rawDb, filename = ':memory:') {
     // eslint-disable-next-line @typescript-eslint/no-explicit-any -- sql.js Statement instances
     const activeStatements = new Map();
+    // SQL-text cache; see SqlJsDatabase.statementCache for rationale.
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any -- prepared-statement wrapper objects
+    const statementCache = new Map();
     let statementCounter = 0;
     return {
         prepare(sql) {
+            const cached = statementCache.get(sql);
+            if (cached)
+                return cached;
             const stmt = rawDb.prepare(sql);
             let isFinalized = false;
             const stmtId = ++statementCounter;
             activeStatements.set(stmtId, stmt);
-            return {
+            const evictOnError = () => {
+                if (!isFinalized) {
+                    stmt.free();
+                    isFinalized = true;
+                    activeStatements.delete(stmtId);
+                    statementCache.delete(sql);
+                }
+            };
+            const wrapper = {
                 // eslint-disable-next-line @typescript-eslint/no-explicit-any -- sql.js bind accepts heterogeneous params
                 run(...params) {
                     if (isFinalized)
@@ -293,11 +316,7 @@ export function wrapExistingSqlJsDatabase(rawDb, filename = ':memory:') {
                         };
                     }
                     catch (error) {
-                        if (!isFinalized) {
-                            stmt.free();
-                            isFinalized = true;
-                            activeStatements.delete(stmtId);
-                        }
+                        evictOnError();
                         throw error;
                     }
                 },
@@ -320,11 +339,7 @@ export function wrapExistingSqlJsDatabase(rawDb, filename = ':memory:') {
                         return result;
                     }
                     catch (error) {
-                        if (!isFinalized) {
-                            stmt.free();
-                            isFinalized = true;
-                            activeStatements.delete(stmtId);
-                        }
+                        evictOnError();
                         throw error;
                     }
                 },
@@ -346,22 +361,16 @@ export function wrapExistingSqlJsDatabase(rawDb, filename = ':memory:') {
                         return results;
                     }
                     catch (error) {
-                        if (!isFinalized) {
-                            stmt.free();
-                            isFinalized = true;
-                            activeStatements.delete(stmtId);
-                        }
+                        evictOnError();
                         throw error;
                     }
                 },
                 finalize() {
-                    if (!isFinalized) {
-                        stmt.free();
-                        isFinalized = true;
-                        activeStatements.delete(stmtId);
-                    }
+                    // No-op while cached; close() handles teardown.
                 },
             };
+            statementCache.set(sql, wrapper);
+            return wrapper;
         },
         exec(sql) {
             return rawDb.exec(sql);
@@ -384,6 +393,7 @@ export function wrapExistingSqlJsDatabase(rawDb, filename = ':memory:') {
                 catch { /* already freed */ }
             }
             activeStatements.clear();
+            statementCache.clear();
             this.save();
             rawDb.close();
         },

package/dist/src/db-fallback.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agentdb",
-  "version": "3.0.0-alpha.11",
+  "version": "3.0.0-alpha.13",
   "description": "AgentDB v3 - Intelligent agentic vector database with RVF native format, RuVector-powered graph DB, Cypher queries, ACID persistence. 150x faster than SQLite with self-learning GNN, 6 cognitive memory patterns, semantic routing, COW branching, sparse/partitioned/fused attention (10-100x speedup), and comprehensive MCP integration. Runs anywhere: Node.js, browsers, edge, offline.",
   "type": "module",
   "main": "dist/src/index.js",

package/dist/schemas/frontier-schema.sql

@@ -1,378 +0,0 @@
--- ============================================================================
--- AgentDB Frontier Features Schema Extension
--- ============================================================================
--- Implements cutting-edge memory features:
--- 1. Causal Memory Graph - Store edges with causal strength, not just similarity
--- 2. Explainable Recall Certificates - Provenance and justification tracking
--- ============================================================================
-
--- ============================================================================
--- FEATURE 1: Causal Memory Graph
--- ============================================================================
-
--- Causal edges between memories with intervention effects
-CREATE TABLE IF NOT EXISTS causal_edges (
-  id INTEGER PRIMARY KEY AUTOINCREMENT,
-  from_memory_id INTEGER NOT NULL,
-  from_memory_type TEXT NOT NULL, -- 'episode', 'skill', 'note', 'fact'
-  to_memory_id INTEGER NOT NULL,
-  to_memory_type TEXT NOT NULL,
-
-  -- Traditional similarity
-  similarity REAL NOT NULL DEFAULT 0.0,
-
-  -- Causal metrics
-  uplift REAL, -- E[y|do(x)] - E[y]
-  confidence REAL DEFAULT 0.5, -- Confidence in causal claim
-  sample_size INTEGER, -- Number of observations
-
-  -- Evidence and provenance
-  evidence_ids TEXT, -- JSON array of proof IDs
-  experiment_ids TEXT, -- JSON array of A/B test IDs
-  confounder_score REAL, -- Likelihood of confounding
-
-  -- Metadata
-  mechanism TEXT, -- Hypothesized causal mechanism
-  created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now')),
-  updated_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now')),
-  last_validated_at INTEGER,
-
-  metadata JSON
-
-  -- Note: Foreign keys removed to allow flexible causal edges between any concepts
-  -- from_memory_id and to_memory_id can be 0 for abstract causal relationships
-);
-
-CREATE INDEX IF NOT EXISTS idx_causal_edges_from ON causal_edges(from_memory_id, from_memory_type);
-CREATE INDEX IF NOT EXISTS idx_causal_edges_to ON causal_edges(to_memory_id, to_memory_type);
-CREATE INDEX IF NOT EXISTS idx_causal_edges_uplift ON causal_edges(uplift DESC);
-CREATE INDEX IF NOT EXISTS idx_causal_edges_confidence ON causal_edges(confidence DESC);
-
--- Causal experiments (A/B tests for uplift estimation)
-CREATE TABLE IF NOT EXISTS causal_experiments (
-  id INTEGER PRIMARY KEY AUTOINCREMENT,
-  name TEXT NOT NULL,
-  hypothesis TEXT NOT NULL,
-  treatment_id INTEGER NOT NULL, -- Memory used as treatment
-  treatment_type TEXT NOT NULL,
-  control_id INTEGER, -- Optional control memory
-
-  -- Experiment design
-  start_time INTEGER NOT NULL,
-  end_time INTEGER,
-  sample_size INTEGER DEFAULT 0,
-
-  -- Results
-  treatment_mean REAL,
-  control_mean REAL,
-  uplift REAL, -- treatment_mean - control_mean
-  p_value REAL,
-  confidence_interval_low REAL,
-  confidence_interval_high REAL,
-
-  -- Status
-  status TEXT DEFAULT 'running', -- 'running', 'completed', 'failed'
-
-  metadata JSON,
-  created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now'))
-);
-
-CREATE INDEX IF NOT EXISTS idx_causal_experiments_status ON causal_experiments(status);
-CREATE INDEX IF NOT EXISTS idx_causal_experiments_treatment ON causal_experiments(treatment_id, treatment_type);
-
--- Causal observations (individual data points)
-CREATE TABLE IF NOT EXISTS causal_observations (
-  id INTEGER PRIMARY KEY AUTOINCREMENT,
-  experiment_id INTEGER NOT NULL,
-  episode_id INTEGER NOT NULL,
-
-  -- Treatment assignment
-  is_treatment BOOLEAN NOT NULL,
-
-  -- Outcome
-  outcome_value REAL NOT NULL,
-  outcome_type TEXT, -- 'reward', 'success', 'latency'
-
-  -- Context
-  context JSON,
-  observed_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now')),
-
-  FOREIGN KEY(experiment_id) REFERENCES causal_experiments(id) ON DELETE CASCADE,
-  FOREIGN KEY(episode_id) REFERENCES episodes(id) ON DELETE CASCADE
-);
-
-CREATE INDEX IF NOT EXISTS idx_causal_observations_experiment ON causal_observations(experiment_id);
-CREATE INDEX IF NOT EXISTS idx_causal_observations_treatment ON causal_observations(is_treatment);
-
--- ============================================================================
--- FEATURE 2: Explainable Recall Certificates
--- ============================================================================
-
--- Recall certificates for provenance and justification
-CREATE TABLE IF NOT EXISTS recall_certificates (
-  id TEXT PRIMARY KEY, -- UUID or hash
-  query_id TEXT NOT NULL,
-  query_text TEXT NOT NULL,
-
-  -- Retrieved chunks
-  chunk_ids TEXT NOT NULL, -- JSON array
-  chunk_types TEXT NOT NULL, -- JSON array matching chunk_ids
-
-  -- Minimal hitting set (justification)
-  minimal_why TEXT, -- JSON array of chunk IDs that justify the answer
-  redundancy_ratio REAL, -- len(chunk_ids) / len(minimal_why)
-  completeness_score REAL, -- Fraction of query requirements met
-
-  -- Provenance chain
-  merkle_root TEXT NOT NULL,
-  source_hashes TEXT, -- JSON array of source hashes
-  proof_chain TEXT, -- JSON Merkle proof
-
-  -- Policy compliance
-  policy_proof TEXT, -- Proof of policy adherence
-  policy_version TEXT,
-  access_level TEXT, -- 'public', 'internal', 'confidential', 'restricted'
-
-  -- Metadata
-  created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now')),
-  latency_ms INTEGER,
-
-  metadata JSON
-);
-
-CREATE INDEX IF NOT EXISTS idx_recall_certificates_query ON recall_certificates(query_id);
-CREATE INDEX IF NOT EXISTS idx_recall_certificates_created ON recall_certificates(created_at DESC);
-
--- Provenance sources (for Merkle tree construction)
-CREATE TABLE IF NOT EXISTS provenance_sources (
-  id INTEGER PRIMARY KEY AUTOINCREMENT,
-  source_type TEXT NOT NULL, -- 'episode', 'skill', 'note', 'fact', 'external'
-  source_id INTEGER NOT NULL,
-
-  -- Content hash
-  content_hash TEXT NOT NULL UNIQUE,
-
-  -- Lineage
-  parent_hash TEXT, -- Previous version
-  derived_from TEXT, -- JSON array of parent hashes
-
-  -- Metadata
-  created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now')),
-  creator TEXT, -- User or system identifier
-
-  metadata JSON
-);
-
-CREATE INDEX IF NOT EXISTS idx_provenance_sources_type ON provenance_sources(source_type, source_id);
-CREATE INDEX IF NOT EXISTS idx_provenance_sources_hash ON provenance_sources(content_hash);
-CREATE INDEX IF NOT EXISTS idx_provenance_sources_parent ON provenance_sources(parent_hash);
-
--- Justification paths (why a chunk was included)
-CREATE TABLE IF NOT EXISTS justification_paths (
-  id INTEGER PRIMARY KEY AUTOINCREMENT,
-  certificate_id TEXT NOT NULL,
-  chunk_id TEXT NOT NULL,
-  chunk_type TEXT NOT NULL,
-
-  -- Justification
-  reason TEXT NOT NULL, -- 'semantic_match', 'causal_link', 'prerequisite', 'constraint'
-  necessity_score REAL NOT NULL, -- How essential is this chunk (0-1)
-
-  -- Path to query satisfaction
-  path_elements TEXT, -- JSON array describing reasoning path
-
-  FOREIGN KEY(certificate_id) REFERENCES recall_certificates(id) ON DELETE CASCADE
-);
-
-CREATE INDEX IF NOT EXISTS idx_justification_paths_cert ON justification_paths(certificate_id);
-CREATE INDEX IF NOT EXISTS idx_justification_paths_chunk ON justification_paths(chunk_id, chunk_type);
-
--- ============================================================================
--- Views for Causal Analysis
--- ============================================================================
-
--- High-confidence causal relationships
-CREATE VIEW IF NOT EXISTS strong_causal_edges AS
-SELECT
-  ce.*,
-  CASE
-    WHEN ce.uplift > 0 THEN 'positive'
-    WHEN ce.uplift < 0 THEN 'negative'
-    ELSE 'neutral'
-  END as effect_direction,
-  ce.uplift * ce.confidence as causal_impact
-FROM causal_edges ce
-WHERE ce.confidence >= 0.7
-  AND ce.uplift IS NOT NULL
-  AND ABS(ce.uplift) >= 0.1
-ORDER BY ABS(ce.uplift) * ce.confidence DESC;
-
--- Causal chains (multi-hop reasoning)
-CREATE VIEW IF NOT EXISTS causal_chains AS
-WITH RECURSIVE chain(from_id, to_id, depth, path, total_uplift) AS (
-  SELECT from_memory_id, to_memory_id, 1,
-         from_memory_id || '->' || to_memory_id,
-         uplift
-  FROM causal_edges
-  WHERE confidence >= 0.6
-
-  UNION ALL
-
-  SELECT chain.from_id, ce.to_memory_id, chain.depth + 1,
-         chain.path || '->' || ce.to_memory_id,
-         chain.total_uplift + ce.uplift
-  FROM chain
-  JOIN causal_edges ce ON chain.to_id = ce.from_memory_id
-  WHERE chain.depth < 5
-    AND ce.confidence >= 0.6
-    AND chain.path NOT LIKE '%' || ce.to_memory_id || '%'
-)
-SELECT * FROM chain
-WHERE depth >= 2
-ORDER BY total_uplift DESC, depth ASC;
-
--- ============================================================================
--- Views for Explainability
--- ============================================================================
-
--- Certificate quality metrics
-CREATE VIEW IF NOT EXISTS certificate_quality AS
-SELECT
-  rc.id,
-  rc.query_id,
-  rc.completeness_score,
-  rc.redundancy_ratio,
-  COUNT(jp.id) as justification_count,
-  AVG(jp.necessity_score) as avg_necessity,
-  rc.latency_ms
-FROM recall_certificates rc
-LEFT JOIN justification_paths jp ON rc.id = jp.certificate_id
-GROUP BY rc.id;
-
--- Provenance lineage depth
-CREATE VIEW IF NOT EXISTS provenance_depth AS
-WITH RECURSIVE lineage(hash, depth) AS (
-  SELECT content_hash, 0
-  FROM provenance_sources
-  WHERE parent_hash IS NULL
-
-  UNION ALL
-
-  SELECT ps.content_hash, lineage.depth + 1
-  FROM lineage
-  JOIN provenance_sources ps ON lineage.hash = ps.parent_hash
-)
-SELECT
-  ps.id,
-  ps.source_type,
-  ps.source_id,
-  ps.content_hash,
-  COALESCE(l.depth, 0) as lineage_depth
-FROM provenance_sources ps
-LEFT JOIN lineage l ON ps.content_hash = l.hash;
-
--- ============================================================================
--- Triggers for Automatic Maintenance
--- ============================================================================
-
--- Update causal edge timestamp
-CREATE TRIGGER IF NOT EXISTS update_causal_edge_timestamp
-AFTER UPDATE ON causal_edges
-BEGIN
-  UPDATE causal_edges
-  SET updated_at = strftime('%s', 'now')
-  WHERE id = NEW.id;
-END;
-
--- Validate causal confidence bounds
-CREATE TRIGGER IF NOT EXISTS validate_causal_confidence
-BEFORE INSERT ON causal_edges
-BEGIN
-  SELECT CASE
-    WHEN NEW.confidence < 0 OR NEW.confidence > 1 THEN
-      RAISE(ABORT, 'Confidence must be between 0 and 1')
-  END;
-END;
-
--- ============================================================================
--- Functions for Causal Inference (as SQL helpers)
--- ============================================================================
-
--- These would typically be implemented in TypeScript, but we provide
--- SQL views that can assist with common causal queries
-
--- Instrumental variables (potential instruments for causal inference)
-CREATE VIEW IF NOT EXISTS causal_instruments AS
-SELECT
-  e1.id as instrument_id,
-  e1.task as instrument,
-  e2.id as treatment_id,
-  e2.task as treatment,
-  e3.id as outcome_id,
-  e3.task as outcome
-FROM episodes e1
-CROSS JOIN episodes e2
-CROSS JOIN episodes e3
-WHERE e1.id != e2.id AND e2.id != e3.id AND e1.id != e3.id
-  -- Instrument affects treatment
-  AND EXISTS (
-    SELECT 1 FROM causal_edges
-    WHERE from_memory_id = e1.id AND to_memory_id = e2.id
-      AND ABS(uplift) > 0.1
-  )
-  -- Treatment affects outcome
-  AND EXISTS (
-    SELECT 1 FROM causal_edges
-    WHERE from_memory_id = e2.id AND to_memory_id = e3.id
-      AND ABS(uplift) > 0.1
-  )
-  -- Instrument doesn't directly affect outcome (exclusion restriction)
-  AND NOT EXISTS (
-    SELECT 1 FROM causal_edges
-    WHERE from_memory_id = e1.id AND to_memory_id = e3.id
-  );
-
--- ============================================================================
--- Schema Version
--- ============================================================================
--- Version: 2.0.0 (Frontier Features)
--- Features: Causal Memory Graph, Explainable Recall Certificates
--- Compatible with: AgentDB 1.x
--- ============================================================================
-
--- ============================================================================
--- FEATURE 3: Reinforcement Learning Experiences
--- ============================================================================
-
--- Learning experiences for RL training
-CREATE TABLE IF NOT EXISTS learning_experiences (
-  id INTEGER PRIMARY KEY AUTOINCREMENT,
-  session_id TEXT NOT NULL,
-  state TEXT NOT NULL,
-  action TEXT NOT NULL,
-  reward REAL NOT NULL,
-  next_state TEXT,
-  success INTEGER NOT NULL DEFAULT 0,
-  timestamp INTEGER NOT NULL DEFAULT (strftime('%s', 'now')),
-  metadata JSON
-);
-
-CREATE INDEX IF NOT EXISTS idx_learning_experiences_session ON learning_experiences(session_id);
-CREATE INDEX IF NOT EXISTS idx_learning_experiences_timestamp ON learning_experiences(timestamp DESC);
-CREATE INDEX IF NOT EXISTS idx_learning_experiences_reward ON learning_experiences(reward DESC);
-
--- Learning sessions table for RL session management
-CREATE TABLE IF NOT EXISTS learning_sessions (
-  id TEXT PRIMARY KEY,
-  user_id TEXT NOT NULL,
-  session_type TEXT NOT NULL,
-  config JSON NOT NULL,
-  start_time INTEGER NOT NULL DEFAULT (strftime('%s', 'now')),
-  end_time INTEGER,
-  status TEXT NOT NULL DEFAULT 'active',
-  metadata JSON
-);
-
-CREATE INDEX IF NOT EXISTS idx_learning_sessions_user ON learning_sessions(user_id);
-CREATE INDEX IF NOT EXISTS idx_learning_sessions_status ON learning_sessions(status);
-CREATE INDEX IF NOT EXISTS idx_learning_sessions_start ON learning_sessions(start_time DESC);