agentdb 3.0.0-alpha.11 → 3.0.0-alpha.13

package/dist/src/backends/graph/GraphDatabaseAdapter.d.ts

@@ -122,6 +122,60 @@ export declare class GraphDatabaseAdapter {
      * Generic createEdge method for graph traversal scenarios
      */
     createEdge(edge: JsEdge): Promise<void>;
+    /**
+     * Delete a node by id. With `cascade: true` (default) all incident edges
+     * are removed in the same transaction (`DETACH DELETE`); with
+     * `cascade: false` the call refuses when incident edges exist (matching
+     * the spec from RuVector#427).
+     *
+     * @returns `deletedNode`: whether the node existed and was removed.
+     *          `deletedEdges`: count of incident edges removed (only meaningful
+     *          when `cascade: true`).
+     */
+    deleteNode(id: string, opts?: {
+        cascade?: boolean;
+    }): Promise<{
+        deletedNode: boolean;
+        deletedEdges: number;
+    }>;
+    /**
+     * Delete a single edge by id. Endpoints stay intact.
+     */
+    deleteEdge(id: string): Promise<{
+        deleted: boolean;
+    }>;
+    /**
+     * Delete a hyperedge by id. Member nodes stay intact.
+     *
+     * Hyperedges are stored as relationship-like entities in RuVector's graph;
+     * we use the same Cypher pattern as `deleteEdge` but match `:HYPEREDGE`
+     * to disambiguate when the storage represents both as relationships.
+     */
+    deleteHyperedge(id: string): Promise<{
+        deleted: boolean;
+    }>;
+    /**
+     * Delete every edge between two endpoints, optionally filtered by label.
+     * Saves callers the cost of materialising edge ids first when they want to
+     * scrub a `(source, target [, label])` tuple wholesale.
+     */
+    deleteEdgesByEndpoints(from: string, to: string, label?: string): Promise<{
+        deleted: number;
+    }>;
+    /**
+     * Cypher escaping for ids/strings. We single-quote the value, so any
+     * embedded single quote needs doubling, and backslashes are escaped to
+     * keep the binding's parser happy.
+     */
+    private escapeId;
+    private escapeLabel;
+    /**
+     * Pull the first numeric value of column `col` out of a JsQueryResult.
+     * Different binding versions package row data slightly differently
+     * (`rows`, `nodes`, `edges`, `data`); this is the lowest-common-denominator
+     * extractor.
+     */
+    private firstNumeric;
     /**
      * Get graph statistics
      */

package/dist/src/backends/graph/GraphDatabaseAdapter.d.ts.map

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package/dist/src/backends/graph/GraphDatabaseAdapter.js

@@ -183,6 +183,131 @@ export class GraphDatabaseAdapter {
     async createEdge(edge) {
         await this.db.createEdge(edge);
     }
+    // ==========================================================================
+    // Delete API (issue #150 — closes the gap from ruflo#1784 / RuVector#427)
+    //
+    // The native @ruvector/graph-node binding (currently 2.0.4) doesn't expose
+    // direct deleteNode / deleteEdge / deleteHyperedge methods, but `query()`
+    // accepts arbitrary Cypher. We implement deletes by routing through Cypher
+    // so downstream consumers (ruflo's adr-index, agent decommissioning, etc.)
+    // can keep the graph in sync with external sources of truth without
+    // rebuilding the whole database.
+    // ==========================================================================
+    /**
+     * Delete a node by id. With `cascade: true` (default) all incident edges
+     * are removed in the same transaction (`DETACH DELETE`); with
+     * `cascade: false` the call refuses when incident edges exist (matching
+     * the spec from RuVector#427).
+     *
+     * @returns `deletedNode`: whether the node existed and was removed.
+     *          `deletedEdges`: count of incident edges removed (only meaningful
+     *          when `cascade: true`).
+     */
+    async deleteNode(id, opts = {}) {
+        const cascade = opts.cascade !== false;
+        const escaped = this.escapeId(id);
+        // Count incident edges before delete so we can return an accurate count
+        // regardless of whether the binding's stats include it.
+        const before = await this.db.query(`MATCH ({id: '${escaped}'})-[r]-() RETURN count(r) AS edgeCount`);
+        const edgeCount = this.firstNumeric(before, 'edgeCount') ?? 0;
+        if (!cascade && edgeCount > 0) {
+            throw new Error(`deleteNode('${id}', { cascade: false }): node has ${edgeCount} incident edge(s); ` +
+                `pass cascade: true to remove them in the same transaction.`);
+        }
+        const cypher = cascade
+            ? `MATCH (n {id: '${escaped}'}) DETACH DELETE n RETURN count(n) AS deleted`
+            : `MATCH (n {id: '${escaped}'}) DELETE n RETURN count(n) AS deleted`;
+        const result = await this.db.query(cypher);
+        const deletedNode = (this.firstNumeric(result, 'deleted') ?? 0) > 0;
+        return { deletedNode, deletedEdges: cascade ? edgeCount : 0 };
+    }
+    /**
+     * Delete a single edge by id. Endpoints stay intact.
+     */
+    async deleteEdge(id) {
+        const escaped = this.escapeId(id);
+        const result = await this.db.query(`MATCH ()-[r {id: '${escaped}'}]-() DELETE r RETURN count(r) AS deleted`);
+        const deleted = (this.firstNumeric(result, 'deleted') ?? 0) > 0;
+        return { deleted };
+    }
+    /**
+     * Delete a hyperedge by id. Member nodes stay intact.
+     *
+     * Hyperedges are stored as relationship-like entities in RuVector's graph;
+     * we use the same Cypher pattern as `deleteEdge` but match `:HYPEREDGE`
+     * to disambiguate when the storage represents both as relationships.
+     */
+    async deleteHyperedge(id) {
+        const escaped = this.escapeId(id);
+        const result = await this.db.query(`MATCH ()-[r:HYPEREDGE {id: '${escaped}'}]-() DELETE r RETURN count(r) AS deleted`);
+        const deleted = (this.firstNumeric(result, 'deleted') ?? 0) > 0;
+        return { deleted };
+    }
+    /**
+     * Delete every edge between two endpoints, optionally filtered by label.
+     * Saves callers the cost of materialising edge ids first when they want to
+     * scrub a `(source, target [, label])` tuple wholesale.
+     */
+    async deleteEdgesByEndpoints(from, to, label) {
+        const f = this.escapeId(from);
+        const t = this.escapeId(to);
+        const labelClause = label ? `:${this.escapeLabel(label)}` : '';
+        const result = await this.db.query(`MATCH ({id: '${f}'})-[r${labelClause}]->({id: '${t}'}) DELETE r RETURN count(r) AS deleted`);
+        const deleted = this.firstNumeric(result, 'deleted') ?? 0;
+        return { deleted };
+    }
+    /**
+     * Cypher escaping for ids/strings. We single-quote the value, so any
+     * embedded single quote needs doubling, and backslashes are escaped to
+     * keep the binding's parser happy.
+     */
+    escapeId(value) {
+        return String(value).replace(/\\/g, '\\\\').replace(/'/g, "\\'");
+    }
+    escapeLabel(label) {
+        if (!/^[A-Za-z_][A-Za-z0-9_]*$/.test(label)) {
+            throw new Error(`Invalid graph label: ${label}`);
+        }
+        return label;
+    }
+    /**
+     * Pull the first numeric value of column `col` out of a JsQueryResult.
+     * Different binding versions package row data slightly differently
+     * (`rows`, `nodes`, `edges`, `data`); this is the lowest-common-denominator
+     * extractor.
+     */
+    firstNumeric(result, col) {
+        if (!result)
+            return null;
+        const candidates = [];
+        if (Array.isArray(result.rows))
+            candidates.push(...result.rows);
+        if (Array.isArray(result.data))
+            candidates.push(...result.data);
+        if (Array.isArray(result.nodes))
+            candidates.push(...result.nodes);
+        if (Array.isArray(result.edges))
+            candidates.push(...result.edges);
+        if (Array.isArray(result))
+            candidates.push(...result);
+        for (const row of candidates) {
+            if (row == null)
+                continue;
+            if (typeof row === 'object' && col in row) {
+                const v = row[col];
+                const n = typeof v === 'string' ? Number(v) : v;
+                if (typeof n === 'number' && !Number.isNaN(n))
+                    return n;
+            }
+            if (typeof row === 'object' && row.properties && col in row.properties) {
+                const v = row.properties[col];
+                const n = typeof v === 'string' ? Number(v) : v;
+                if (typeof n === 'number' && !Number.isNaN(n))
+                    return n;
+            }
+        }
+        return null;
+    }
     /**
      * Get graph statistics
      */

package/dist/src/backends/graph/GraphDatabaseAdapter.js.map

@@ -1 +1 @@
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package/dist/src/controllers/ReflexionMemory.d.ts

@@ -52,6 +52,13 @@ export declare class ReflexionMemory {
     /**
      * Store a new episode with its critique and outcome
      * Invalidates relevant cache entries
+     *
+     * Persistence guarantee (issue #128 fix):
+     *   storeEpisode() always writes to the SQLite `episodes` and
+     *   `episode_embeddings` tables when a SQL-capable connection is present,
+     *   even when a graph or vector backend handles the primary index. This
+     *   ensures data survives process restarts (graph/vector backends are
+     *   often in-memory or rebuildable from SQL).
      */
     storeEpisode(episode: Episode): Promise<number>;
     /**
@@ -193,5 +200,48 @@ export declare class ReflexionMemory {
      * Warm cache with common queries
      */
     warmCache(sessionId?: string): Promise<void>;
+    /**
+     * Delete an episode by id. Closes the gap from issue #150 (downstream:
+     * ruflo#1784, RuVector#427) — once an episode is written there was no
+     * first-class way to remove it through any backend.
+     *
+     * Strategy mirrors storeEpisode: when a graph backend is present we go
+     * through it (`graphAdapter.deleteNode` / `graphBackend.deleteNode` —
+     * both Cypher-backed under the hood), and we ALWAYS also purge the SQL
+     * `episodes` and `episode_embeddings` rows so durable storage stays in
+     * sync. Vector backend entries are removed too when present.
+     *
+     * @returns True if the episode existed in any backend and was removed.
+     */
+    deleteEpisode(id: number | string): Promise<boolean>;
+    /**
+     * Dual-write helper for issue #128.
+     *
+     * Inserts the given episode into the SQLite `episodes` and
+     * `episode_embeddings` tables when the underlying connection supports it.
+     * Used when a graph or vector backend handles the primary index but the
+     * caller still wants restart-safe persistence.
+     *
+     * Errors are swallowed and logged — the primary write to the graph/vector
+     * backend has already succeeded, and we don't want to fail the caller if
+     * SQL persistence is unavailable (e.g. read-only DB, schema not present).
+     */
+    private dualWriteEpisodeToSQL;
+    /**
+     * Rebuild the in-memory vector index from the SQLite `episodes` /
+     * `episode_embeddings` tables, going through the proper backend channels
+     * so `retrieveRelevant()` sees the data afterwards.
+     *
+     * Fixes the user's recovery use-case from issue #129: rather than calling
+     * `vectorBackend.getInner().insert()` directly (which bypasses the
+     * GuardedBackend wrapper and confuses retrieveRelevant), call this method
+     * to re-hydrate the vector and graph indices from durable storage.
+     *
+     * Returns the number of episodes re-indexed. No-ops cleanly when the SQL
+     * tables are empty or absent.
+     */
+    rebuildIndex(options?: {
+        fromTimestamp?: number;
+    }): Promise<number>;
 }
 //# sourceMappingURL=ReflexionMemory.d.ts.map

package/dist/src/controllers/ReflexionMemory.d.ts.map

@@ -1 +1 @@
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package/dist/src/controllers/ReflexionMemory.js

@@ -28,6 +28,13 @@ export class ReflexionMemory {
     /**
      * Store a new episode with its critique and outcome
      * Invalidates relevant cache entries
+     *
+     * Persistence guarantee (issue #128 fix):
+     *   storeEpisode() always writes to the SQLite `episodes` and
+     *   `episode_embeddings` tables when a SQL-capable connection is present,
+     *   even when a graph or vector backend handles the primary index. This
+     *   ensures data survives process restarts (graph/vector backends are
+     *   often in-memory or rebuildable from SQL).
      */
     async storeEpisode(episode) {
         // Invalidate episode caches on write
@@ -57,6 +64,9 @@ export class ReflexionMemory {
             const numericId = parseInt(nodeId.split('-').pop() || '0', 36);
             // Register mapping for later use by CausalMemoryGraph
             NodeIdMapper.getInstance().register(numericId, nodeId);
+            // #128: dual-write to SQL for restart-safe persistence. Graph adapter
+            // index is typically in-memory; SQL is the durable record.
+            this.dualWriteEpisodeToSQL(episode, taskEmbedding);
             return numericId;
         }
         // Use generic GraphBackend if available
@@ -89,6 +99,8 @@ export class ReflexionMemory {
             const numericId = parseInt(nodeId.split('-').pop() || '0', 36);
             // Register mapping for later use by CausalMemoryGraph
             NodeIdMapper.getInstance().register(numericId, nodeId);
+            // #128: dual-write to SQL for restart-safe persistence.
+            this.dualWriteEpisodeToSQL(episode, taskEmbedding);
             return numericId;
         }
         // Fallback to SQLite (v1 compatibility)
@@ -812,5 +824,251 @@ export class ReflexionMemory {
             }
         });
     }
+    /**
+     * Delete an episode by id. Closes the gap from issue #150 (downstream:
+     * ruflo#1784, RuVector#427) — once an episode is written there was no
+     * first-class way to remove it through any backend.
+     *
+     * Strategy mirrors storeEpisode: when a graph backend is present we go
+     * through it (`graphAdapter.deleteNode` / `graphBackend.deleteNode` —
+     * both Cypher-backed under the hood), and we ALWAYS also purge the SQL
+     * `episodes` and `episode_embeddings` rows so durable storage stays in
+     * sync. Vector backend entries are removed too when present.
+     *
+     * @returns True if the episode existed in any backend and was removed.
+     */
+    async deleteEpisode(id) {
+        const numericId = typeof id === 'number' ? id : parseInt(String(id), 10);
+        const stringId = String(id);
+        // Invalidate caches up front — failures below shouldn't leave stale reads.
+        this.queryCache.invalidateCategory('episodes');
+        this.queryCache.invalidateCategory('task-stats');
+        let removed = false;
+        // 1. Graph adapter (AgentDB v2 fast path)
+        if (this.graphBackend && 'storeEpisode' in this.graphBackend) {
+            const adapter = this.graphBackend;
+            if (typeof adapter.deleteNode === 'function') {
+                try {
+                    // Adapter accepts either the canonical "episode-<id>" key or a raw
+                    // id; try the canonical form first since that's what storeEpisode
+                    // emits.
+                    const r = await adapter.deleteNode(`episode-${numericId}`, { cascade: true });
+                    if (r?.deletedNode)
+                        removed = true;
+                    if (!removed) {
+                        const r2 = await adapter.deleteNode(stringId, { cascade: true });
+                        if (r2?.deletedNode)
+                            removed = true;
+                    }
+                }
+                catch (err) {
+                    const msg = err instanceof Error ? err.message : String(err);
+                    // eslint-disable-next-line no-console
+                    console.warn(`[ReflexionMemory] deleteEpisode: graph adapter delete failed: ${msg}`);
+                }
+            }
+        }
+        // 2. Generic graph backend
+        else if (this.graphBackend && typeof this.graphBackend.deleteNode === 'function') {
+            try {
+                const r = await this.graphBackend.deleteNode(stringId);
+                if (r === true)
+                    removed = true;
+            }
+            catch (err) {
+                const msg = err instanceof Error ? err.message : String(err);
+                // eslint-disable-next-line no-console
+                console.warn(`[ReflexionMemory] deleteEpisode: graph backend delete failed: ${msg}`);
+            }
+        }
+        // 3. Vector backend (HNSW/RuVector); some implementations don't expose
+        //    delete — guard with a feature check.
+        if (this.vectorBackend && typeof this.vectorBackend.delete === 'function') {
+            try {
+                const r = await this.vectorBackend.delete(String(numericId));
+                if (r === true)
+                    removed = true;
+            }
+            catch (err) {
+                const msg = err instanceof Error ? err.message : String(err);
+                // eslint-disable-next-line no-console
+                console.warn(`[ReflexionMemory] deleteEpisode: vector backend delete failed: ${msg}`);
+            }
+        }
+        // 4. SQL durable storage — always attempt so persistence stays clean
+        //    even when the primary backend was a no-op.
+        if (this.db && typeof this.db.prepare === 'function' && Number.isFinite(numericId)) {
+            try {
+                const embStmt = this.db.prepare(`DELETE FROM episode_embeddings WHERE episode_id = ?`);
+                embStmt.run(numericId);
+                const stmt = this.db.prepare(`DELETE FROM episodes WHERE id = ?`);
+                const r = stmt.run(numericId);
+                const changes = r?.changes ?? 0;
+                if (changes > 0)
+                    removed = true;
+            }
+            catch (err) {
+                const msg = err instanceof Error ? err.message : String(err);
+                if (!/no such table/i.test(msg)) {
+                    // eslint-disable-next-line no-console
+                    console.warn(`[ReflexionMemory] deleteEpisode: SQL delete failed: ${msg}`);
+                }
+            }
+        }
+        return removed;
+    }
+    /**
+     * Dual-write helper for issue #128.
+     *
+     * Inserts the given episode into the SQLite `episodes` and
+     * `episode_embeddings` tables when the underlying connection supports it.
+     * Used when a graph or vector backend handles the primary index but the
+     * caller still wants restart-safe persistence.
+     *
+     * Errors are swallowed and logged — the primary write to the graph/vector
+     * backend has already succeeded, and we don't want to fail the caller if
+     * SQL persistence is unavailable (e.g. read-only DB, schema not present).
+     */
+    dualWriteEpisodeToSQL(episode, embedding) {
+        if (!this.db || typeof this.db.prepare !== 'function')
+            return;
+        try {
+            const stmt = this.db.prepare(`
+        INSERT INTO episodes (
+          session_id, task, input, output, critique, reward, success,
+          latency_ms, tokens_used, tags, metadata
+        ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+      `);
+            const tags = episode.tags ? JSON.stringify(episode.tags) : null;
+            const metadata = episode.metadata ? JSON.stringify(episode.metadata) : null;
+            const result = stmt.run(episode.sessionId, episode.task, episode.input ?? null, episode.output ?? null, episode.critique ?? null, episode.reward, episode.success ? 1 : 0, episode.latencyMs ?? null, episode.tokensUsed ?? null, tags, metadata);
+            if (embedding) {
+                const episodeId = normalizeRowId(result.lastInsertRowid);
+                this.storeEmbedding(episodeId, embedding);
+            }
+        }
+        catch (err) {
+            // The expected failure here is "no such table: episodes" on databases
+            // that intentionally don't carry the v1 schema. Don't escalate — the
+            // primary backend already has the data.
+            const msg = err instanceof Error ? err.message : String(err);
+            if (!/no such table/i.test(msg)) {
+                // eslint-disable-next-line no-console
+                console.warn('[ReflexionMemory] dualWriteEpisodeToSQL failed:', msg);
+            }
+        }
+    }
+    /**
+     * Rebuild the in-memory vector index from the SQLite `episodes` /
+     * `episode_embeddings` tables, going through the proper backend channels
+     * so `retrieveRelevant()` sees the data afterwards.
+     *
+     * Fixes the user's recovery use-case from issue #129: rather than calling
+     * `vectorBackend.getInner().insert()` directly (which bypasses the
+     * GuardedBackend wrapper and confuses retrieveRelevant), call this method
+     * to re-hydrate the vector and graph indices from durable storage.
+     *
+     * Returns the number of episodes re-indexed. No-ops cleanly when the SQL
+     * tables are empty or absent.
+     */
+    async rebuildIndex(options = {}) {
+        if (!this.db || typeof this.db.prepare !== 'function')
+            return 0;
+        const where = options.fromTimestamp !== undefined ? 'WHERE e.ts >= ?' : '';
+        const params = options.fromTimestamp !== undefined ? [options.fromTimestamp] : [];
+        let rows = [];
+        try {
+            const stmt = this.db.prepare(`
+        SELECT
+          e.id, e.ts, e.session_id, e.task, e.input, e.output, e.critique,
+          e.reward, e.success, e.latency_ms, e.tokens_used, e.tags, e.metadata,
+          ee.embedding
+        FROM episodes e
+        LEFT JOIN episode_embeddings ee ON ee.episode_id = e.id
+        ${where}
+        ORDER BY e.id ASC
+      `);
+            rows = stmt.all(...params);
+        }
+        catch (err) {
+            const msg = err instanceof Error ? err.message : String(err);
+            if (/no such table/i.test(msg))
+                return 0;
+            throw err;
+        }
+        let reindexed = 0;
+        for (const row of rows) {
+            const episode = {
+                id: row.id,
+                ts: row.ts,
+                sessionId: row.session_id,
+                task: row.task,
+                input: row.input ?? undefined,
+                output: row.output ?? undefined,
+                critique: row.critique ?? undefined,
+                reward: row.reward,
+                success: row.success === 1,
+                latencyMs: row.latency_ms ?? undefined,
+                tokensUsed: row.tokens_used ?? undefined,
+                tags: row.tags ? JSON.parse(row.tags) : undefined,
+                metadata: row.metadata ? JSON.parse(row.metadata) : undefined,
+            };
+            // Prefer the stored embedding; fall back to recomputing if missing.
+            let embedding;
+            if (row.embedding) {
+                const buf = row.embedding;
+                embedding = new Float32Array(buf.buffer, buf.byteOffset, buf.length / 4);
+            }
+            else {
+                embedding = await this.embedder.embed(this.buildEpisodeText(episode));
+            }
+            // Re-insert through the proper public APIs so the GuardedBackend
+            // wrapper, graph adapter, and HNSW all stay in sync.
+            if (this.vectorBackend) {
+                try {
+                    this.vectorBackend.insert(String(row.id), embedding, {
+                        type: 'episode',
+                        sessionId: episode.sessionId,
+                        reward: episode.reward,
+                        success: episode.success,
+                    });
+                }
+                catch (err) {
+                    const msg = err instanceof Error ? err.message : String(err);
+                    // eslint-disable-next-line no-console
+                    console.warn(`[ReflexionMemory] rebuildIndex: vector insert failed for ${row.id}: ${msg}`);
+                }
+            }
+            if (this.graphBackend && 'storeEpisode' in this.graphBackend) {
+                const adapter = this.graphBackend;
+                try {
+                    await adapter.storeEpisode({
+                        id: `episode-${row.id}`,
+                        sessionId: episode.sessionId,
+                        task: episode.task,
+                        reward: episode.reward,
+                        success: episode.success,
+                        input: episode.input,
+                        output: episode.output,
+                        critique: episode.critique,
+                        createdAt: (episode.ts ?? Date.now() / 1000) * 1000,
+                        tokensUsed: episode.tokensUsed,
+                        latencyMs: episode.latencyMs,
+                    }, embedding);
+                }
+                catch (err) {
+                    const msg = err instanceof Error ? err.message : String(err);
+                    // eslint-disable-next-line no-console
+                    console.warn(`[ReflexionMemory] rebuildIndex: graph store failed for ${row.id}: ${msg}`);
+                }
+            }
+            reindexed++;
+        }
+        // Bust any stale read caches so the next retrieveRelevant sees the
+        // freshly-rebuilt index.
+        this.queryCache.invalidateCategory('episodes');
+        this.queryCache.invalidateCategory('task-stats');
+        return reindexed;
+    }
 }
 //# sourceMappingURL=ReflexionMemory.js.map