agentdb 1.6.0 → 2.0.0-alpha.1

package/dist/malp/metrics/performance.js.map

@@ -0,0 +1 @@
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package/dist/malp/models/index.d.ts

@@ -0,0 +1,7 @@
+/**
+ * MALP Models Module
+ *
+ * Exports MALP regression models.
+ */
+export * from './regressor';
+//# sourceMappingURL=index.d.ts.map

package/dist/malp/models/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/malp/models/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,cAAc,aAAa,CAAC"}

package/dist/malp/models/index.js

@@ -0,0 +1,7 @@
+/**
+ * MALP Models Module
+ *
+ * Exports MALP regression models.
+ */
+export * from './regressor';
+//# sourceMappingURL=index.js.map

package/dist/malp/models/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/malp/models/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,cAAc,aAAa,CAAC"}

package/dist/malp/models/malp.d.ts

@@ -0,0 +1,116 @@
+/**
+ * MALP Regressor - Maximum Agreement Linear Predictor
+ *
+ * A linear regression model that maximizes the Concordance Correlation Coefficient (CCC)
+ * instead of minimizing squared error. Provides better agreement between predictions
+ * and observations, especially for measurement validation and method comparison.
+ */
+import { Vector, Matrix } from '../core/linalg.js';
+import { OptimizerConfig, OptimizationResult } from '../core/optimizer.js';
+/**
+ * MALP model configuration
+ */
+export interface MALPConfig {
+    /** Whether to fit an intercept term */
+    fitIntercept: boolean;
+    /** Optimizer configuration */
+    optimizer: Partial<OptimizerConfig>;
+    /** Initialize with least squares solution */
+    useLeastSquaresInit: boolean;
+}
+/**
+ * Default MALP configuration
+ */
+export declare const DEFAULT_MALP_CONFIG: MALPConfig;
+/**
+ * MALP Regressor Model
+ *
+ * Fits a linear model by maximizing the Concordance Correlation Coefficient.
+ *
+ * Usage:
+ * ```typescript
+ * const model = new MALPRegressor();
+ * model.fit(X, y);
+ * const predictions = model.predict(X);
+ * const score = model.score(X, y);
+ * ```
+ */
+export declare class MALPRegressor {
+    private config;
+    private coefficients;
+    private intercept;
+    private isFitted;
+    private optimizationResult;
+    constructor(config?: Partial<MALPConfig>);
+    /**
+     * Fit the MALP model to training data
+     *
+     * @param X - Feature matrix (n_samples × n_features)
+     * @param y - Target values (n_samples)
+     * @returns this (for method chaining)
+     */
+    fit(X: number[][] | Matrix, y: number[] | Vector): this;
+    /**
+     * Make predictions using the fitted model
+     *
+     * @param X - Feature matrix (n_samples × n_features)
+     * @returns Predicted values (n_samples)
+     */
+    predict(X: number[][] | Matrix): number[];
+    /**
+     * Compute CCC score on test data
+     *
+     * @param X - Feature matrix (n_samples × n_features)
+     * @param y - True target values (n_samples)
+     * @returns CCC score (higher is better, range [-1, 1])
+     */
+    score(X: number[][] | Matrix, y: number[] | Vector): number;
+    /**
+     * Get model coefficients (excluding intercept)
+     */
+    getCoefficients(): number[] | null;
+    /**
+     * Get model intercept
+     */
+    getIntercept(): number;
+    /**
+     * Check if model is fitted
+     */
+    isTrained(): boolean;
+    /**
+     * Get optimization result details
+     */
+    getOptimizationResult(): OptimizationResult | null;
+    /**
+     * Get model summary statistics
+     */
+    summary(): {
+        coefficients: number[] | null;
+        intercept: number;
+        isFitted: boolean;
+        finalCCC: number | null;
+        iterations: number | null;
+        converged: boolean | null;
+    };
+    /**
+     * Reset the model to unfitted state
+     */
+    reset(): void;
+    /**
+     * Clone the model configuration (not the fitted state)
+     */
+    clone(): MALPRegressor;
+    /**
+     * Set model parameters directly (for advanced use cases)
+     */
+    setParams(coefficients: number[], intercept?: number): void;
+    /**
+     * Get feature importance based on coefficient magnitudes
+     */
+    getFeatureImportance(): number[] | null;
+}
+/**
+ * Convenience function for fitting MALP model
+ */
+export declare function fitMALP(X: number[][] | Matrix, y: number[] | Vector, config?: Partial<MALPConfig>): MALPRegressor;
+//# sourceMappingURL=malp.d.ts.map

package/dist/malp/models/malp.d.ts.map

@@ -0,0 +1 @@
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package/dist/malp/models/malp.js

@@ -0,0 +1,206 @@
+/**
+ * MALP Regressor - Maximum Agreement Linear Predictor
+ *
+ * A linear regression model that maximizes the Concordance Correlation Coefficient (CCC)
+ * instead of minimizing squared error. Provides better agreement between predictions
+ * and observations, especially for measurement validation and method comparison.
+ */
+import { createVector, createMatrix, addIntercept, matVecMultiply, leastSquares } from '../core/linalg.js';
+import { computeCCC } from '../core/ccc.js';
+import { GradientAscentOptimizer, DEFAULT_OPTIMIZER_CONFIG } from '../core/optimizer.js';
+/**
+ * Default MALP configuration
+ */
+export const DEFAULT_MALP_CONFIG = {
+    fitIntercept: true,
+    optimizer: DEFAULT_OPTIMIZER_CONFIG,
+    useLeastSquaresInit: true
+};
+/**
+ * MALP Regressor Model
+ *
+ * Fits a linear model by maximizing the Concordance Correlation Coefficient.
+ *
+ * Usage:
+ * ```typescript
+ * const model = new MALPRegressor();
+ * model.fit(X, y);
+ * const predictions = model.predict(X);
+ * const score = model.score(X, y);
+ * ```
+ */
+export class MALPRegressor {
+    config;
+    coefficients = null;
+    intercept = 0;
+    isFitted = false;
+    optimizationResult = null;
+    constructor(config = {}) {
+        this.config = {
+            ...DEFAULT_MALP_CONFIG,
+            ...config,
+            optimizer: { ...DEFAULT_OPTIMIZER_CONFIG, ...(config.optimizer || {}) }
+        };
+    }
+    /**
+     * Fit the MALP model to training data
+     *
+     * @param X - Feature matrix (n_samples × n_features)
+     * @param y - Target values (n_samples)
+     * @returns this (for method chaining)
+     */
+    fit(X, y) {
+        // Convert inputs to standard format
+        const XMatrix = Array.isArray(X) ? createMatrix(X) : X;
+        const yVector = Array.isArray(y) ? createVector(y) : y;
+        if (XMatrix.rows !== yVector.length) {
+            throw new Error(`Sample size mismatch: ${XMatrix.rows} !== ${yVector.length}`);
+        }
+        // Add intercept column if needed
+        const XWithIntercept = this.config.fitIntercept ? addIntercept(XMatrix) : XMatrix;
+        // Initialize parameters
+        let initialParams;
+        if (this.config.useLeastSquaresInit) {
+            // Initialize with least squares solution
+            initialParams = leastSquares(XWithIntercept, yVector);
+        }
+        else {
+            // Initialize with zeros
+            initialParams = createVector(new Array(XWithIntercept.cols).fill(0));
+        }
+        // Optimize parameters to maximize CCC
+        const optimizer = new GradientAscentOptimizer(this.config.optimizer);
+        this.optimizationResult = optimizer.optimize(XWithIntercept, yVector, initialParams);
+        // Extract coefficients and intercept
+        const params = this.optimizationResult.parameters;
+        if (this.config.fitIntercept) {
+            this.intercept = params.data[0];
+            this.coefficients = createVector(params.data.slice(1));
+        }
+        else {
+            this.intercept = 0;
+            this.coefficients = params;
+        }
+        this.isFitted = true;
+        return this;
+    }
+    /**
+     * Make predictions using the fitted model
+     *
+     * @param X - Feature matrix (n_samples × n_features)
+     * @returns Predicted values (n_samples)
+     */
+    predict(X) {
+        if (!this.isFitted || !this.coefficients) {
+            throw new Error('Model must be fitted before making predictions');
+        }
+        const XMatrix = Array.isArray(X) ? createMatrix(X) : X;
+        if (XMatrix.cols !== this.coefficients.length) {
+            throw new Error(`Feature dimension mismatch: ${XMatrix.cols} !== ${this.coefficients.length}`);
+        }
+        // Compute predictions: y_pred = X * β + intercept
+        const predictions = matVecMultiply(XMatrix, this.coefficients);
+        if (this.config.fitIntercept) {
+            for (let i = 0; i < predictions.length; i++) {
+                predictions.data[i] += this.intercept;
+            }
+        }
+        return predictions.data;
+    }
+    /**
+     * Compute CCC score on test data
+     *
+     * @param X - Feature matrix (n_samples × n_features)
+     * @param y - True target values (n_samples)
+     * @returns CCC score (higher is better, range [-1, 1])
+     */
+    score(X, y) {
+        const predictions = this.predict(X);
+        const yVector = Array.isArray(y) ? createVector(y) : y;
+        const predVector = createVector(predictions);
+        const { ccc } = computeCCC(yVector, predVector);
+        return ccc;
+    }
+    /**
+     * Get model coefficients (excluding intercept)
+     */
+    getCoefficients() {
+        return this.coefficients ? [...this.coefficients.data] : null;
+    }
+    /**
+     * Get model intercept
+     */
+    getIntercept() {
+        return this.intercept;
+    }
+    /**
+     * Check if model is fitted
+     */
+    isTrained() {
+        return this.isFitted;
+    }
+    /**
+     * Get optimization result details
+     */
+    getOptimizationResult() {
+        return this.optimizationResult ? { ...this.optimizationResult } : null;
+    }
+    /**
+     * Get model summary statistics
+     */
+    summary() {
+        return {
+            coefficients: this.getCoefficients(),
+            intercept: this.intercept,
+            isFitted: this.isFitted,
+            finalCCC: this.optimizationResult?.finalCCC ?? null,
+            iterations: this.optimizationResult?.iterations ?? null,
+            converged: this.optimizationResult?.converged ?? null
+        };
+    }
+    /**
+     * Reset the model to unfitted state
+     */
+    reset() {
+        this.coefficients = null;
+        this.intercept = 0;
+        this.isFitted = false;
+        this.optimizationResult = null;
+    }
+    /**
+     * Clone the model configuration (not the fitted state)
+     */
+    clone() {
+        return new MALPRegressor(this.config);
+    }
+    /**
+     * Set model parameters directly (for advanced use cases)
+     */
+    setParams(coefficients, intercept = 0) {
+        this.coefficients = createVector(coefficients);
+        this.intercept = intercept;
+        this.isFitted = true;
+    }
+    /**
+     * Get feature importance based on coefficient magnitudes
+     */
+    getFeatureImportance() {
+        if (!this.coefficients) {
+            return null;
+        }
+        // Compute absolute values for importance
+        const importance = this.coefficients.data.map(Math.abs);
+        // Normalize to sum to 1
+        const total = importance.reduce((sum, val) => sum + val, 0);
+        return total > 0 ? importance.map(val => val / total) : importance;
+    }
+}
+/**
+ * Convenience function for fitting MALP model
+ */
+export function fitMALP(X, y, config) {
+    const model = new MALPRegressor(config);
+    model.fit(X, y);
+    return model;
+}
+//# sourceMappingURL=malp.js.map

package/dist/malp/models/malp.js.map

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package/dist/malp/models/regressor.d.ts

@@ -0,0 +1,80 @@
+/**
+ * MALP Regressor - Maximum Agreement Linear Program
+ *
+ * Linear regression that maximizes concordance correlation coefficient
+ * instead of minimizing squared error.
+ */
+import { OptimizerConfig } from '../core/optimizer';
+export interface MALPRegressorConfig extends Partial<OptimizerConfig> {
+    fitIntercept?: boolean;
+    normalize?: boolean;
+    regularization?: number;
+}
+export type MALPConfig = MALPRegressorConfig;
+export declare const DEFAULT_MALP_CONFIG: Required<MALPRegressorConfig>;
+export interface FitResult {
+    weights: number[];
+    intercept: number;
+    ccc: number;
+    r2: number;
+    rmse: number;
+    mae: number;
+    iterations: number;
+    converged: boolean;
+}
+export declare class MALPRegressor {
+    private weights;
+    private intercept;
+    private optimizer;
+    private config;
+    private xMean;
+    private xStd;
+    private fitted;
+    constructor(config?: MALPRegressorConfig);
+    /**
+     * Fit MALP regressor to training data
+     * @param X Feature matrix (n_samples × n_features)
+     * @param y Target values (n_samples)
+     */
+    fit(X: number[][], y: number[]): FitResult;
+    /**
+     * Predict target values for new data
+     * @param X Feature matrix (n_samples × n_features)
+     */
+    predict(X: number[][]): number[];
+    /**
+     * Score the model on test data
+     * @param X Feature matrix
+     * @param y True target values
+     * @returns CCC score
+     */
+    score(X: number[][], y: number[]): number;
+    /**
+     * Get model coefficients
+     */
+    getCoefficients(): {
+        weights: number[];
+        intercept: number;
+    };
+    /**
+     * Normalize features (zero mean, unit variance)
+     */
+    private normalizeFeatures;
+    /**
+     * Compute evaluation metrics
+     */
+    private computeMetrics;
+}
+/**
+ * Cross-validation for MALP regressor
+ */
+export declare function crossValidateMALP(X: number[][], y: number[], nFolds?: number, config?: MALPRegressorConfig): {
+    meanCCC: number;
+    stdCCC: number;
+    foldScores: number[];
+};
+/**
+ * Convenience function to fit a MALP model
+ */
+export declare function fitMALP(X: number[][], y: number[], config?: MALPRegressorConfig): FitResult;
+//# sourceMappingURL=regressor.d.ts.map

package/dist/malp/models/regressor.d.ts.map

@@ -0,0 +1 @@
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