@weng-lab/visualization 2.6.0-beta.1 → 2.7.0-beta.0

package/dist/src/components/ScatterPlot/types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../../src/components/ScatterPlot/types.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AACpD,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAC1C,OAAO,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,OAAO,CAAC;AACpD,OAAO,EAAE,kBAAkB,EAAE,aAAa,EAAE,MAAM,eAAe,CAAC;AAClE,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AAEnD;;;;;;;;;;;;;;GAcG;AACH,eAAO,MAAM,YAAY,oFAAqF,CAAC;AAE/G,MAAM,MAAM,UAAU,GAAG,CAAC,OAAO,YAAY,CAAC,CAAC,MAAM,CAAC,CAAC;AAEvD;;;EAGE;AACF,MAAM,MAAM,KAAK,CAAC,CAAC,IAAI;IACnB;;OAEG;IACH,CAAC,EAAE,MAAM,CAAC;IACV,CAAC,EAAE,MAAM,CAAC;IACV;;;;;;;;OAQG;IACH,KAAK,CAAC,EAAE,UAAU,CAAC;IACnB;;;;;OAKG;IACH,CAAC,CAAC,EAAE,MAAM,CAAC;IACX;;;;OAIG;IACH,KAAK,CAAC,EAAE,MAAM,CAAC;IACf;;OAEG;IACH,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB;;;OAGG;IACH,KAAK,CAAC,EAAE,MAAM,CAAC;IACf;;;;OAIG;IACH,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB;;;;;;OAMG;IACH,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB;;;;;;;;OAQG;IACH,QAAQ,CAAC,EAAE,CAAC,CAAC;CAChB,CAAC;AAEF;;;;EAIE;AACF,MAAM,MAAM,iBAAiB,GAAG;IAC5B,CAAC,EAAE,MAAM,CAAC;IACV,CAAC,EAAE,MAAM,CAAC;CACb,CAAC;AAEF,MAAM,MAAM,aAAa,GAAG,QAAQ,GAAG,KAAK,GAAG,MAAM,CAAC;AAEtD;;;;;GAKG;AACH,MAAM,MAAM,YAAY,GAAG;IACvB,QAAQ,CAAC,EAAE;QACP,KAAK,EAAE,MAAM,CAAC;QACd,MAAM,EAAE,MAAM,CAAA;KACjB,CAAC;CACL,CAAC;AAEF;;GAEG;AACH,MAAM,MAAM,YAAY,CAAC,CAAC,EAAE,CAAC,IAAI;IAC7B,OAAO,CAAC,EAAE;QACN;;WAEG;QACH,IAAI,CAAC,EAAE,OAAO,CAAC;KAClB,CAAC;IACF,QAAQ,CAAC,EAAE;QACP;;;WAGG;QACH,aAAa,CAAC,EAAE,CAAC,SAAS,IAAI,GAAG,KAAK,GAAG,QAAQ,GAAG,CAAC,SAAS,IAAI,GAAG,QAAQ,GAAG,MAAM,GAAG,KAAK,CAAC;KAClG,CAAC;CACL,CAAA;AAED;;EAEE;AACF,MAAM,MAAM,UAAU,CAAC,CAAC,EAAE,CAAC,SAAS,OAAO,GAAG,SAAS,EAAE,CAAC,SAAS,OAAO,GAAG,SAAS,IAAI,eAAe,GAAG;IACxG;;;OAGG;IACH,SAAS,EAAE,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;IACtB;;;OAGG;IACH,OAAO,EAAE,OAAO,CAAC;IACjB;;;;;OAKG;IACH,UAAU,CAAC,EAAE,CAAC,CAAC;IACf;;;;;;;;;OASG;IACH,WAAW,CAAC,EAAE,CAAC,CAAC;IAChB;;;;;OAKG;IACH,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB;;;;;;OAMG;IACH,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B;;;;;;;OAOG;IACH,uBAAuB,CAAC,EAAE,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC,CAAC,EAAE,KAAK,IAAI,CAAA;IACtD;;;;;;OAMG;IACH,iBAAiB,CAAC,EAAE,CAAC,cAAc,EAAE,KAAK,CAAC,CAAC,CAAC,EAAE,KAAK,IAAI,CAAC;IACzD;;;;;OAKG;IACH,cAAc,CAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC,KAAK,IAAI,CAAC;IAC3C;;;;;;;;;;;;;;OAcG;IACH,oBAAoB,CAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC,GAAG,IAAI,KAAK,IAAI,CAAC;IACxD;;;;;;;;;;;OAWG;IACH,aAAa,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;IAC3B;;;;;;;;OAQG;IACH,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB;;;;;OAKG;IACH,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB;;;;;;;;OAQG;IACH,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB;;;;;OAKG;IACH,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB;;;;;OAKG;IACH,iBAAiB,CAAC,EAAE,MAAM,KAAK,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC;IAC7C;;;;;;;;;;;;;;;;;;;;;;;;;;;;OA4BG;IACH,WAAW,CAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC,KAAK,YAAY,CAAC;IAChD,OAAO,CAAC,EAAE,YAAY,CAAC;IACvB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,YAAY,CAAC,EAAE,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;IAClC,GAAG,CAAC,EAAE,KAAK,CAAC,GAAG,CAAC,kBAAkB,CAAC,CAAC;IACpC,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B;;;;OAIG;IACH,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,SAAS,CAAC,EAAE,aAAa,CAAC;IAC1B,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB;;;;;OAKG;IACH,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB;;;OAGG;IACH,kBAAkB,CAAC,EAAE,kBAAkB,CAAC;IACxC;;;;OAIG;IACH,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB;;;;;OAKG;IACH,iBAAiB,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAC;IAC7C;;;;;OAKG;IACH,iBAAiB,CAAC,EAAE,CAAC,QAAQ,EAAE,iBAAiB,GAAG,IAAI,KAAK,IAAI,CAAC;IACjE;;;;;;OAMG;IACH,IAAI,CAAC,EAAE,QAAQ,CAAC;IAChB;;;OAGG;IACH,OAAO,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC3B;;OAEG;IACH,OAAO,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC3B;;;;OAIG;IACH,gBAAgB,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC;IACpC;;;;;;;;;;OAUG;IACH,MAAM,CAAC,EAAE,OAAO,CAAC;CACpB,CAAC;AAEF,0EAA0E;AAC1E,MAAM,MAAM,QAAQ,GAAG;IACnB,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,MAAM,CAAC;CACnB,CAAC;AAEF,MAAM,MAAM,kBAAkB,GAAG;IAC7B,qFAAqF;IACrF,UAAU,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC;IACtC,sDAAsD;IACtD,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE;QACL,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,QAAQ,CAAC,EAAE,MAAM,CAAC;KACrB,CAAC;CACL,CAAC;AAEF,MAAM,MAAM,IAAI,GAAG;IAAE,CAAC,EAAE,MAAM,CAAC;IAAC,CAAC,EAAE,MAAM,CAAA;CAAE,EAAE,CAAC;AAC9C,MAAM,MAAM,KAAK,GAAG,IAAI,EAAE,CAAC;AAE3B,MAAM,MAAM,QAAQ,CAAC,CAAC,IAAI;IACtB,OAAO,EAAE,YAAY,CAAC;IACtB,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;IACtB,MAAM,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;IAC3C,MAAM,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;IAC3C,IAAI,EAAE,QAAQ,CAAC;IACf,SAAS,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAC;IACrC,QAAQ,EAAE,QAAQ,CAAC;IACnB,uFAAuF;IACvF,WAAW,EAAE,GAAG,CAAC,MAAM,CAAC,GAAG,IAAI,CAAC;CACnC,CAAA;AAED,MAAM,MAAM,YAAY,CAAC,CAAC,IAAI;IAC1B,WAAW,CAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC,KAAK,YAAY,CAAC;IAChD,WAAW,EAAE,KAAK,CAAC,CAAC,CAAC,CAAC;IACtB;;;OAGG;IACH,CAAC,EAAE,MAAM,CAAC;IACV,CAAC,EAAE,MAAM,CAAC;IACV,KAAK,CAAC,EAAE,aAAa,CAAC;CACzB,CAAA;AAED,MAAM,MAAM,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package/dist/src/index.d.ts

@@ -1,5 +1,5 @@
 export { ScatterPlot, ScatterPlotSync, getSharedDomains, getShapePoints, POINT_SHAPES } from './components/ScatterPlot';
-export type { MiniMapProps, ChartProps, Point, PointShape, CrosshairPosition, ZoomType, ScatterPlotSyncProps, SyncedPlotProps } from './components/ScatterPlot';
+export type { MiniMapProps, ChartProps, Point, PointShape, CrosshairPosition, ZoomType, DimStyle, ScatterPlotSyncProps, SyncedPlotProps } from './components/ScatterPlot';
 export { Graph } from './components/Graph';
 export type { GraphProps } from './components/Graph';
 export { ViolinPlot } from './components/ViolinPlot';
@@ -15,6 +15,7 @@ export * from './components/PhyloTree';
 export * from './components/DotPlot';
 export * from './components/SequenceAlignmentPlot';
 export * from './components/Heatmap';
+export * from './components/Legend';
 export { Histogram } from './components/Histogram';
 export type { HistogramProps, HistogramBin } from './components/Histogram';
 export { useResponsiveParentSize, ResponsiveContainer } from './responsive';

package/dist/src/index.d.ts.map

@@ -1 +1 @@
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package/dist/src/utility.d.ts

@@ -42,10 +42,10 @@ export declare const getAnimationProps: (type: AnimationType | undefined, index:
 } | {
     transition: Transition;
     initial: {
-        opacity: number;
-        scale?: undefined;
-        y?: undefined;
-        x?: undefined;
+        opacity?: number;
+        scale?: number;
+        x?: number;
+        y?: number;
     };
     animate: {
         opacity: number;
@@ -56,10 +56,10 @@ export declare const getAnimationProps: (type: AnimationType | undefined, index:
 } | {
     transition: Transition;
     initial: {
-        opacity: number;
-        scale: number;
-        y?: undefined;
-        x?: undefined;
+        opacity?: number;
+        scale?: number;
+        x?: number;
+        y?: number;
     };
     animate: {
         opacity: number;
@@ -70,10 +70,10 @@ export declare const getAnimationProps: (type: AnimationType | undefined, index:
 } | {
     transition: Transition;
     initial: {
-        opacity: number;
-        y: number;
-        scale?: undefined;
-        x?: undefined;
+        opacity?: number;
+        scale?: number;
+        x?: number;
+        y?: number;
     };
     animate: {
         opacity: number;
@@ -84,10 +84,10 @@ export declare const getAnimationProps: (type: AnimationType | undefined, index:
 } | {
     transition: Transition;
     initial: {
-        opacity: number;
-        x: number;
-        scale?: undefined;
-        y?: undefined;
+        opacity?: number;
+        scale?: number;
+        x?: number;
+        y?: number;
     };
     animate: {
         opacity: number;
@@ -97,10 +97,10 @@ export declare const getAnimationProps: (type: AnimationType | undefined, index:
     };
 } | {
     initial: {
-        scale: number;
-        opacity?: undefined;
-        y?: undefined;
-        x?: undefined;
+        opacity?: number;
+        scale?: number;
+        x?: number;
+        y?: number;
     };
     animate: {
         scale: number;
@@ -110,4 +110,18 @@ export declare const getAnimationProps: (type: AnimationType | undefined, index:
     };
     transition: Transition;
 };
+/** A mark partway through its entry animation. */
+export interface AnimationPose {
+    opacity: number;
+    scale: number;
+    /** Offset from its resting place, in px. */
+    x: number;
+    y: number;
+    done: boolean;
+}
+/**
+ * getAnimationProps's animation sampled `elapsed` seconds in, for renderers that paint their own
+ * frames (a canvas).
+ */
+export declare const getAnimationPose: (type: AnimationType, index: number, elapsed: number, buffer?: number) => AnimationPose;
 //# sourceMappingURL=utility.d.ts.map

package/dist/src/utility.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"utility.d.ts","sourceRoot":"","sources":["../../src/utility.ts"],"names":[],"mappings":"AAEA,OAAO,EAAW,UAAU,EAAE,MAAM,eAAe,CAAC;AAEpD,MAAM,MAAM,aAAa,GAAG,MAAM,GAAG,OAAO,GAAG,SAAS,GAAG,YAAY,GAAG,KAAK,CAAC;AAEhF,MAAM,WAAW,kBAAkB;IAGjC,WAAW,EAAE,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IACxC,WAAW,EAAE,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;CACzC;AAED;;GAEG;AACH,wBAAgB,gBAAgB,CAC5B,MAAM,EAAE,WAAW,GAAG,IAAI,EAC1B,QAAQ,SAAoB,EAC5B,KAAK,SAA+B,QAyBvC;AAED;;GAEG;AACH,wBAAgB,gBAAgB,CAC5B,MAAM,EAAE,WAAW,GAAG,IAAI,EAC1B,QAAQ,GAAE,MAA0B,QAavC;AAED;;GAEG;AACH,wBAAgB,YAAY,CAAC,IAAI,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,QAOxD;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,UAAU,EAAE,aAAa,EAAE,QAAQ,SAAc,QAI9E;AAKD,eAAO,MAAM,2BAA2B,QAAQ,CAAC;AACjD,eAAO,MAAM,wBAAwB,QAA4D,CAAC;AAElG;;;;;;;GAOG;AACH,wBAAgB,gBAAgB,CAAC,UAAU,EAAE,aAAa,EAAE,QAAQ,SAAc,EAAE,KAAK,SAA+B,EAAE,UAAU,CAAC,EAAE,CAAC,OAAO,EAAE,OAAO,KAAK,IAAI,QA+ChK;AAID;;GAEG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,MAAM,CAS3F;AAiBD,eAAO,MAAM,iBAAiB,GAAI,MAAM,aAAa,GAAG,SAAS,EAAE,OAAO,MAAM,EAAE,eAAY;;;;;gBAM9D,UAAU;;kBAde,MAAM;gBAAU,MAAM;YAAM,MAAM;YAAM,MAAM;;;;;;;;;gBAcvE,UAAU;;kBAde,MAAM;gBAAU,MAAM;YAAM,MAAM;YAAM,MAAM;;;;;;;;;gBAcvE,UAAU;;kBAde,MAAM;gBAAU,MAAM;YAAM,MAAM;YAAM,MAAM;;;;;;;;;gBAcvE,UAAU;;kBAde,MAAM;gBAAU,MAAM;YAAM,MAAM;YAAM,MAAM;;;;;;;;;;kBAA9C,MAAM;gBAAU,MAAM;YAAM,MAAM;YAAM,MAAM;;;;;;;;;CAyCtG,CAAC;AAEF,kDAAkD;AAClD,MAAM,WAAW,aAAa;IAC1B,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,4CAA4C;IAC5C,CAAC,EAAE,MAAM,CAAC;IACV,CAAC,EAAE,MAAM,CAAC;IACV,IAAI,EAAE,OAAO,CAAC;CACjB;AAcD;;;GAGG;AACH,eAAO,MAAM,gBAAgB,GAAI,MAAM,aAAa,EAAE,OAAO,MAAM,EAAE,SAAS,MAAM,EAAE,eAAY,KAAG,aAiBpG,CAAC"}

package/dist/visualization.es.js

@@ -6,37 +6,56 @@ import { default as x } from "./visualization.es6.js";
 import { default as u } from "./visualization.es7.js";
 import { default as i } from "./visualization.es8.js";
 import { default as S } from "./visualization.es9.js";
-import { default as g } from "./visualization.es10.js";
-import { default as T } from "./visualization.es11.js";
-import { POINT_SHAPES as A } from "./visualization.es12.js";
-import { default as b } from "./visualization.es13.js";
-import { ProportionsBar as B } from "./visualization.es14.js";
-import { ResponsiveContainer as D } from "./visualization.es15.js";
-import { SequenceAlignmentPlot as k } from "./visualization.es16.js";
-import { getProportionsFromArray as z } from "./visualization.es17.js";
-import { getShapePoints as F, getSharedDomains as G } from "./visualization.es18.js";
-import { useResponsiveParentSize as N } from "./visualization.es19.js";
-import { useStableCallback as V } from "./visualization.es20.js";
+import { default as c } from "./visualization.es10.js";
+import { default as C } from "./visualization.es11.js";
+import { default as y } from "./visualization.es12.js";
+import { default as T } from "./visualization.es13.js";
+import { default as A } from "./visualization.es14.js";
+import { Colorbar as H } from "./visualization.es15.js";
+import { POINT_SHAPES as D } from "./visualization.es16.js";
+import { default as V } from "./visualization.es17.js";
+import { ProportionsBar as q } from "./visualization.es18.js";
+import { ResponsiveContainer as z } from "./visualization.es19.js";
+import { SequenceAlignmentPlot as F } from "./visualization.es20.js";
+import { evenStops as I, percentilePresets as N, percentileRange as _, rampColor as j, reachOf as J, sameRange as K, sweptValues as M, symmetricPresets as Q } from "./visualization.es21.js";
+import { getProportionsFromArray as W } from "./visualization.es22.js";
+import { getShapePoints as Y, getSharedDomains as Z } from "./visualization.es23.js";
+import { themeLabelStyle as ee } from "./visualization.es24.js";
+import { useResponsiveParentSize as re } from "./visualization.es25.js";
+import { useStableCallback as ae } from "./visualization.es26.js";
 export {
   r as BarPlot,
-  a as DotPlot,
-  p as Graph,
-  m as Heatmap,
-  x as Histogram,
-  A as POINT_SHAPES,
-  u as PhyloTree,
-  b as PlotTooltip,
-  B as ProportionsBar,
-  D as ResponsiveContainer,
-  i as ScatterPlot,
-  S as ScatterPlotSync,
-  k as SequenceAlignmentPlot,
-  g as Treemap,
-  T as ViolinPlot,
-  z as getProportionsFromArray,
-  F as getShapePoints,
-  G as getSharedDomains,
-  N as useResponsiveParentSize,
-  V as useStableCallback
+  a as ChipLegend,
+  p as ColorRangeButton,
+  H as Colorbar,
+  m as ColorbarLegend,
+  x as DotPlot,
+  u as Graph,
+  i as Heatmap,
+  S as Histogram,
+  D as POINT_SHAPES,
+  c as PhyloTree,
+  V as PlotTooltip,
+  q as ProportionsBar,
+  z as ResponsiveContainer,
+  C as ScatterPlot,
+  y as ScatterPlotSync,
+  F as SequenceAlignmentPlot,
+  T as Treemap,
+  A as ViolinPlot,
+  I as evenStops,
+  W as getProportionsFromArray,
+  Y as getShapePoints,
+  Z as getSharedDomains,
+  N as percentilePresets,
+  _ as percentileRange,
+  j as rampColor,
+  J as reachOf,
+  K as sameRange,
+  M as sweptValues,
+  Q as symmetricPresets,
+  ee as themeLabelStyle,
+  re as useResponsiveParentSize,
+  ae as useStableCallback
 };
 //# sourceMappingURL=visualization.es.js.map

package/dist/visualization.es.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;"}
+{"version":3,"file":"visualization.es.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;"}

package/dist/visualization.es10.js

@@ -1,63 +1,172 @@
-import { jsx as m } from "react/jsx-runtime";
-import { useState as N, useRef as P, useImperativeHandle as b } from "react";
-import H from "./visualization.es66.js";
-import { downloadSVGAsPNG as G, downloadAsSVG as I, getAnimationProps as k } from "./visualization.es24.js";
-import { useResponsiveParentSize as B } from "./visualization.es19.js";
-import W from "./visualization.es67.js";
-import { ResponsiveContainer as A } from "./visualization.es15.js";
-import C from "./visualization.es68.js";
-import E from "./visualization.es69.js";
-import O from "./visualization.es70.js";
-import T from "./visualization.es71.js";
-import V from "./visualization.es72.js";
-import Y from "./visualization.es73.js";
-import j from "./visualization.es74.js";
-import { motion as q } from "./visualization.es29.js";
-const re = (t) => {
-  const {
-    parentRef: u,
-    containerStyle: g,
-    width: p,
-    height: f
-  } = B({
-    width: t.width,
-    height: t.height
-  }), [y, v] = N(null), d = P(null), S = W({
-    label: "root",
-    value: 0,
-    children: t.data
-  }).sum((i) => i.value).sort((i, a) => (a.value || 0) - (i.value || 0)), w = {
-    treemapSquarify: j,
-    treemapBinary: Y,
-    treemapDice: V,
-    treemapResquarify: T,
-    treemapSlice: O,
-    treemapSliceDice: E
-  }, e = t.treemapStyle ?? {}, R = e.paddingInner !== void 0 ? e.paddingInner : e.padding !== void 0 ? e.padding : 0, z = e.paddingOuter !== void 0 ? e.paddingOuter : e.padding !== void 0 ? e.padding : 0;
-  return b(t.ref, () => ({
-    downloadSVG: () => {
-      d.current && I(d.current, t.downloadFileName ?? "tree_map.svg");
-    },
-    downloadPNG: () => {
-      d.current && G(d.current, t.downloadFileName ?? "tree_map.png");
+import { jsx as N, jsxs as oe } from "react/jsx-runtime";
+import { useState as G, useMemo as f, useRef as U, useCallback as R } from "react";
+import { ZoomFrame as ce } from "./visualization.es96.js";
+import { RenderTree as re } from "./visualization.es97.js";
+import ie from "./visualization.es87.js";
+import le from "./visualization.es92.js";
+import de from "./visualization.es98.js";
+import ue from "./visualization.es99.js";
+import he from "./visualization.es100.js";
+import S from "./visualization.es101.js";
+import pe from "./visualization.es51.js";
+import me from "./visualization.es102.js";
+import { pathRadialStep as J } from "./visualization.es103.js";
+const we = {
+  duration: 0.3,
+  ease: "easeInOut"
+}, be = () => 1, ge = (t, i, r) => i === 0 ? 0 : t / i * r, Le = (t) => {
+  const i = /-?\d*\.?\d+[eE][+-]?\d+/g;
+  return t.replace(i, (r) => Number(r).toFixed(10).replace(/\.?0+$/, ""));
+}, K = (t) => (i) => {
+  const r = t(i);
+  return r ? Le(r) : "";
+}, Ne = K(J({
+  source: (t) => t.source,
+  target: (t) => t.target,
+  x: (t) => t?.x || 0,
+  y: (t) => t?.y || 0
+})), fe = K(J({
+  source: (t) => t.source,
+  target: (t) => t.target,
+  x: (t) => t?.x || 0,
+  y: (t) => t?.branchLengthScaledRadius || 0
+})), xe = (t, i) => {
+  t = t.replace(/^#/, "");
+  let r = parseInt(t.substring(0, 2), 16), u = parseInt(t.substring(2, 4), 16), h = parseInt(t.substring(4, 6), 16);
+  r = Math.round(r + (255 - r) * i), u = Math.round(u + (255 - u) * i), h = Math.round(h + (255 - h) * i);
+  const b = (x) => x.toString(16).padStart(2, "0");
+  return `#${b(r)}${b(u)}${b(h)}`;
+}, y = 500, Ae = y * 2;
+function De({
+  width: t,
+  height: i,
+  data: r,
+  highlighted: u = [],
+  hovered: h = [],
+  leafFontSize: b = 8,
+  leafFontFamily: x = "Arial",
+  linkStrokeWidth: I = 1,
+  getColor: X = () => "black",
+  getLabel: Q = (v) => v,
+  onBranchClick: E = () => null,
+  onLeafHoverChange: g,
+  labelPadding: V = 135,
+  defaultScaling: C = "scaled",
+  tooltipContents: B,
+  leafOrder: p
+}) {
+  const [v, W] = G(C === "scaled"), [T, _] = G(null), {
+    tooltipData: P,
+    tooltipLeft: ee,
+    tooltipTop: te,
+    showTooltip: k,
+    hideTooltip: w
+  } = ie(), A = f(() => T ? [T, ...h] : h, [T, h]), {
+    TooltipInPortal: se
+  } = le({
+    scroll: !0,
+    detectBounds: !0
+  }), D = U(null), Y = U(!1), j = (c, s) => {
+    D.current = s ? {
+      node: s,
+      x: c.clientX,
+      y: c.clientY
+    } : {
+      node: null,
+      x: 0,
+      y: 0
+    }, Y.current || (Y.current = !0, requestAnimationFrame(() => {
+      const l = D.current, e = l?.node ?? null;
+      _(e ? e.data.id : null), e && !e.children ? k({
+        tooltipData: e.data,
+        tooltipLeft: l.x,
+        tooltipTop: l.y
+      }) : w(), g && g(e ? e.leaves().map((n) => n.data.id) : []), Y.current = !1;
+    }));
+  }, L = Math.max(0, y - V), q = f(() => [2 * Math.PI, L], [L]), $ = f(() => de(r, (s) => s.children).sum((s) => s.children ? 0 : 1).sort((s, l) => {
+    if (p) {
+      const a = new Map(p.map((d, M) => [d, M])), o = (d) => Math.min(...d.leaves().map((M) => a.get(M.data.id) ?? 1 / 0));
+      return o(s) - o(l);
     }
-  })), /* @__PURE__ */ m(A, { parentRef: u, containerStyle: g, children: /* @__PURE__ */ m("svg", { width: p, height: f, ref: d, children: /* @__PURE__ */ m(C, { root: S, size: [p, f], paddingInner: R, paddingOuter: z, tile: w[t.tileMethod ?? "treemapBinary"], children: (i) => {
-    const a = e.fontSize ? e.fontSize * 2 : 32, h = (r) => {
-      if (!r.children || r.children.length === 0) return;
-      const n = r.y0, l = r.y1 - n;
-      if (l <= a + 1) return;
-      const c = (l - a) / l;
-      r.children.forEach((o) => {
-        o.y0 = n + a + (o.y0 - n) * c, o.y1 = n + a + (o.y1 - n) * c;
-      }), r.children.forEach(h);
-    };
-    return i.children && i.children.forEach(h), i.descendants().filter((r) => r.depth > 0).map((r, n) => {
-      const s = r.ancestors().map((o) => o.data.label).join("/"), l = t.animation ? q.g : "g", c = k(t.animation, n);
-      return /* @__PURE__ */ m(l, { ...c, children: /* @__PURE__ */ m(H, { node: r, isHovered: y === s, onHover: (o) => v(o ? s : null), strokeWidth: e.strokeWidth ?? 0, opacity: e.opacity ?? 0.3, borderRadius: e.borderRadius ?? 0, fontSize: e.fontSize ?? 16, labelPlacement: t.labelPlacement ?? "topLeft", tooltipBody: t.tooltipBody, onNodeClicked: t.onNodeClicked }) }, `node-${n}`);
-    });
-  } }) }) });
-};
+    const e = s.leaves().some((a) => a.data.id === "Homo_sapiens"), n = l.leaves().some((a) => a.data.id === "Homo_sapiens");
+    return e !== n ? e ? -1 : 1 : (s.value || 0) - (l.value || 0) || ue(s.data.branch_length ?? void 0, l.data.branch_length ?? void 0);
+  }), [r, X, L, p]), F = f(() => {
+    const c = he();
+    c.size(q), c.separation(be);
+    const s = c($.copy());
+    let l = 0;
+    if (s.each((e) => {
+      e.label = Q(e.data.id);
+    }), s.eachAfter((e) => {
+      if (!e.children)
+        e.color = X(e.data.id);
+      else {
+        const n = e.children.map((d) => d.color), a = e.children[0].color, o = a !== null && n.every((d) => d === a);
+        e.color = o ? a : "#666";
+      }
+    }), s.eachBefore((e) => {
+      const a = (e.parent?.cumulativeBranchLength ?? 0) + (e.data.branch_length ?? 0);
+      a > l && (l = a), e.cumulativeBranchLength = a;
+    }), s.descendants().forEach((e) => {
+      const n = ge(e.cumulativeBranchLength ?? 0, l, L);
+      e.branchLengthScaledRadius = n;
+    }), s.descendants().forEach((e) => {
+      const [n, a] = S(e.x, e.y), [o, d] = S(e.x, e.branchLengthScaledRadius ?? 0);
+      e.baseNodeX = n, e.baseNodeY = a, e.scaledNodeX = o, e.scaledNodeY = d;
+    }), s.descendants().forEach((e) => {
+      const [n, a] = S(e.x, e.y), [o, d] = S(e.x, e.branchLengthScaledRadius ?? 0);
+      e.baseNodeX = n, e.baseNodeY = a, e.scaledNodeX = o, e.scaledNodeY = d;
+    }), s.descendants().forEach((e) => {
+      if (e.parent) {
+        const n = {
+          source: e.parent,
+          target: e
+        }, a = Ne(n), o = fe(n);
+        e.baseLinkPath = a, e.scaledLinkPath = o;
+      }
+    }), s.leaves().forEach((e) => {
+      e.baseLeafLinkExtension = {
+        x1: e.baseNodeX ?? 0,
+        x2: e.baseNodeX ?? 0,
+        y1: e.baseNodeY ?? 0,
+        y2: e.baseNodeY ?? 0
+      }, e.scaledLeafLinkExtension = {
+        x1: e.scaledNodeX ?? 0,
+        x2: e.baseNodeX ?? 0,
+        y1: e.scaledNodeY ?? 0,
+        y2: e.baseNodeY ?? 0
+      }, e.lightenedLinkExtColor = xe(e.color ?? "#000000", 0.7);
+    }), s.each((e) => {
+      const a = !e.children ? u.includes(e.data.id) : e.leaves().some((o) => u.includes(o.data.id));
+      e.linkStrokeWidth = a ? I * 2 : I, e.labelStrokeWidth = a ? 0.7 : 0;
+    }), s.each((e) => {
+      const n = new Set(e.ancestors().map((o) => o.data.id)), a = new Set(e.descendants().map((o) => o.data.id));
+      e.ancestorIds = n, e.descendantIds = a;
+    }), p) {
+      const e = s.leaves().map((m) => m.data.id), n = new Set(e), a = new Set(p), o = p.filter((m) => n.has(m)), d = e.filter((m) => a.has(m));
+      o.some((m, ne) => m !== d[ne]) && console.error(`[PhyloTree] Requested leafOrder is not achievable given the tree topology.
+Requested: ` + o.join(", ") + `
+Achieved:  ` + d.join(", "));
+    }
+    return s;
+  }, [r, q, L, $, u, I, p]), H = R(() => W((c) => !c), []), Z = R((c, s) => {
+    j(c, s), !s.children && k({
+      tooltipData: s.data,
+      tooltipLeft: c.clientX,
+      tooltipTop: c.clientY
+    }), g && g(s.leaves().map((l) => l.data.id));
+  }, []), O = R((c, s) => {
+    j(c, null), w(), g && g([]);
+  }, []), z = f(() => /* @__PURE__ */ N(pe, { top: y, left: y, children: /* @__PURE__ */ N(re, { node: F, hovered: A, leafFontFamily: x, leafFontSize: b, useBranchLengths: v, onNodeMouseMove: Z, onNodeMouseLeave: O, onBranchClick: E }) }), [F, A, x, b, v, Z, O, E]), ae = R((c) => /* @__PURE__ */ N(ce, { zoom: c, totalWidth: t, totalHeight: i, toggleBranchLength: H, children: z }), [t, i, H, z]);
+  return t < 10 ? null : /* @__PURE__ */ oe("div", { children: [
+    /* @__PURE__ */ N(me, { width: t, height: i, scaleXMin: 0.8, scaleXMax: 4, scaleYMin: 0.8, scaleYMax: 4, children: ae }),
+    P && B && /* @__PURE__ */ N(se, { left: ee, top: te, children: B(P.id) })
+  ] });
+}
 export {
-  re as default
+  Ae as TOTAL_INNER_DIAMETER,
+  y as TOTAL_INNER_RADIUS,
+  De as default,
+  we as useBranchLengthTransition
 };
 //# sourceMappingURL=visualization.es10.js.map

package/dist/visualization.es10.js.map

@@ -1 +1 @@
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+{"version":3,"file":"visualization.es10.js","sources":["../src/components/PhyloTree/PhyloTree.tsx"],"sourcesContent":["import { useMemo, useState, useCallback, useRef, useEffect } from \"react\";\nimport { Group } from \"@visx/group\";\nimport { ascending } from \"@visx/vendor/d3-array\";\nimport { pathRadialStep } from \"@visx/shape\";\nimport { cluster as d3cluster, hierarchy as d3hierarchy } from \"d3-hierarchy\";\nimport { PhyloTreeProps, TreeItem, TreeLink, TreeNode, ZoomState } from \"./types\";\nimport { useTooltip, defaultStyles, useTooltipInPortal } from \"@visx/tooltip\";\nimport { Zoom, ProvidedZoom } from \"@visx/zoom\";\nimport { ZoomFrame } from \"./ZoomFrame\";\nimport { pointRadial } from \"d3-shape\";\nimport { RenderTree } from \"./RenderTree\";\n\n/**\n * Improvements that would make this scale better (as much as svg can):\n * - Combine links into fewer path elements\n *    - Requires having static hit detecting paths, but can create fewer <path> elements by combining link paths\n *    - Creates less work for the browser to update fewer, but more complex paths\n *    - Would need base branches grouped by color, selection path, external highlight path, and invisible static hit target paths for branch selection\n * - Remove hover interaction and opt for click only interactions\n * - If keeping hover behavior, define gapless areas between nodes to prevent -> hover NodeA, hover null, hover NodeB in favor of NodeA -> NodeB\n * - Define single hit area that takes in click event and determines what was hit\n */\n\nexport const useBranchLengthTransition = {\n  duration: 0.3,\n  ease: \"easeInOut\",\n} as const;\n\n// Keep spacing of all leaf nodes consistent\nconst separationFn = () => 1;\n\nconst getBranchLengthScaledY = (cumulativeBranchLength: number, maxBranchLength: number, innerRadius: number) => {\n  return maxBranchLength === 0 ? 0 : (cumulativeBranchLength / maxBranchLength) * innerRadius;\n};\n\n// Framer motion had issues with e notation\nconst rmSciNotation = (pathString: string) => {\n  // Regex to match scientific notation:\n  // optional sign, digits/dots, 'e' or 'E', optional sign, and exponent digits\n  const scientificRegex = /-?\\d*\\.?\\d+[eE][+-]?\\d+/g;\n\n  return pathString.replace(scientificRegex, (match) => {\n    // Convert the match to a Number and then back to a decimal string\n    const num = Number(match);\n\n    // Use toFixed() to ensure no new scientific notation is generated\n    // 10 decimal places is usually enough for SVG precision\n    return num.toFixed(10).replace(/\\.?0+$/, \"\");\n  });\n};\n\nconst withNoSciNotation =\n  <L extends TreeLink>(generator: (link: L) => string | null) =>\n  (link: L) => {\n    const path = generator(link);\n    return path ? rmSciNotation(path) : \"\";\n  };\n\nconst getLinkPath = withNoSciNotation(\n  pathRadialStep<TreeLink, TreeNode>({\n    source: (l) => l.source,\n    target: (l) => l.target,\n    x: (n) => n?.x || 0,\n    y: (n) => n?.y || 0,\n  })\n);\n\nconst getScaledLinkPath = withNoSciNotation(\n  pathRadialStep<TreeLink, TreeNode>({\n    source: (l) => l.source,\n    target: (l) => l.target,\n    x: (n) => n?.x || 0,\n    y: (n) => n?.branchLengthScaledRadius || 0,\n  })\n);\n\n/**\n * Lightens a hex color by blending it with white.\n * @param {string} hex - The input color, e.g. \"#336699\"\n * @param {number} factor - How much to lighten: 0 = no change, 1 = full white\n * @returns {string} - The lightened hex color\n */\nconst lightenHex = (hex: string, factor: number) => {\n  // Remove leading \"#\" if present\n  hex = hex.replace(/^#/, '');\n\n  // Parse r, g, b\n  let r = parseInt(hex.substring(0, 2), 16);\n  let g = parseInt(hex.substring(2, 4), 16);\n  let b = parseInt(hex.substring(4, 6), 16);\n\n  // Blend each channel toward 255 (white)\n  r = Math.round(r + (255 - r) * factor);\n  g = Math.round(g + (255 - g) * factor);\n  b = Math.round(b + (255 - b) * factor);\n\n  // Convert back to hex and pad with zeros\n  const toHex = (c: number) => c.toString(16).padStart(2, '0');\n  return `#${toHex(r)}${toHex(g)}${toHex(b)}`;\n}\n\n/**\n * For internal svg calculation only\n */\nexport const TOTAL_INNER_RADIUS = 500;\n/**\n * For internal svg calculation only (used to define viewbox in ZoomFrame)\n */\nexport const TOTAL_INNER_DIAMETER = TOTAL_INNER_RADIUS * 2;\n\nexport default function PhyloTree({\n  width: totalWidth,\n  height: totalHeight,\n  data,\n  highlighted = [],\n  hovered: externalHovered = [],\n  leafFontSize = 8,\n  leafFontFamily = \"Arial\",\n  linkStrokeWidth = 1,\n  getColor = () => \"black\",\n  getLabel = (id) => id,\n  onBranchClick = () => null,\n  onLeafHoverChange,\n  labelPadding = 135,\n  defaultScaling = \"scaled\",\n  tooltipContents,\n  leafOrder,\n}: PhyloTreeProps) {\n  const [enableBranchLengths, setEnableBranchLengths] = useState<boolean>(defaultScaling === \"scaled\");\n\n  const [internalHovered, setInternalHovered] = useState<string | null>(null)\n  const { tooltipData, tooltipLeft, tooltipTop, tooltipOpen, showTooltip, hideTooltip } = useTooltip<TreeItem>();\n\n  const hovered = useMemo(\n    () => (internalHovered ? [internalHovered, ...externalHovered] : externalHovered),\n    [internalHovered, externalHovered]\n  );\n\n  const { TooltipInPortal } = useTooltipInPortal({\n    scroll: true,\n    detectBounds: true,\n  });\n\n  interface PendingHover {\n    node: TreeNode | null;\n    x: number;\n    y: number;\n  }\n\n  const pendingRef = useRef<PendingHover | null>(null);\n  const frameRef = useRef(false);\n\n  /**\n   * Prevents hover updates more frequently than the browser can repaint by using requestAnimationFrame\n   */\n  const handleDebounceHover = (event: React.MouseEvent, node: TreeNode | null) => {\n    pendingRef.current = node \n      ? { node, x: event.clientX, y: event.clientY }\n      : { node: null, x: 0, y: 0 };\n\n    if (!frameRef.current) {\n      frameRef.current = true;\n\n      requestAnimationFrame(() => {\n        // Everything comes from the ref now — consistent snapshot\n        const pending = pendingRef.current;\n        const pendingNode = pending?.node ?? null;\n\n        setInternalHovered(pendingNode ? pendingNode.data.id : null);\n\n        if (pendingNode && !pendingNode.children) {\n          showTooltip({\n            tooltipData: pendingNode.data,\n            tooltipLeft: pending!.x,\n            tooltipTop: pending!.y,\n          });\n        } else {\n          hideTooltip();\n        }\n\n        if (onLeafHoverChange) {\n          onLeafHoverChange(\n            pendingNode ? pendingNode.leaves().map((leaf) => leaf.data.id) : []\n          );\n        }\n\n        frameRef.current = false;\n      });\n    }\n  };\n\n  const circleRadius = Math.max(0, TOTAL_INNER_RADIUS - labelPadding);\n\n  // This defines the arbitrary x/y coordinate system. For our radial layout X is the angle defined in radians, Y is radius. https://d3js.org/d3-hierarchy/cluster#cluster_size\n  const size: [number, number] = useMemo(() => [2 * Math.PI, circleRadius], [circleRadius]);\n\n  /* Construct root node */\n  const root = useMemo(() => {\n    const r = d3hierarchy(data, (d) => d.children)\n      // sorts first by least number of children, and then by branch length to create nice looking plot\n      .sum((d) => (d.children ? 0 : 1))\n      .sort((a, b) => {\n        if (leafOrder) {\n          const indexMap = new Map(leafOrder.map((id, i) => [id, i]));\n          const minIdx = (node: typeof a) =>\n            Math.min(...node.leaves().map((l) => indexMap.get(l.data.id) ?? Infinity));\n          return minIdx(a) - minIdx(b);\n        }\n\n        // Float the Homo_sapiens subtree to the end so it appears at the top\n        const aHasHuman = a.leaves().some((l) => l.data.id === \"Homo_sapiens\");\n        const bHasHuman = b.leaves().some((l) => l.data.id === \"Homo_sapiens\");\n        if (aHasHuman !== bHasHuman) return aHasHuman ? -1 : 1;\n\n        return (\n          (a.value || 0) - (b.value || 0) ||\n          ascending(a.data.branch_length ?? undefined, b.data.branch_length ?? undefined)\n        );\n      });\n    return r;\n  }, [data, getColor, circleRadius, leafOrder]);\n\n  /* Add layout/render properties */\n  const rootNode = useMemo(() => {\n    const clusterLayout = d3cluster<TreeItem>();\n    clusterLayout.size(size);\n    clusterLayout.separation(separationFn);\n    //copy root node so that the reference changes when this useMemo is rerun. Otherwise is modifying in place\n    const clusterRoot: TreeNode = clusterLayout(root.copy());\n\n    let maxBranchLength = 0;\n\n    clusterRoot.each((node) => {\n      node.label = getLabel(node.data.id)\n    })\n\n    // uniformLeafColor\n    clusterRoot.eachAfter((node) => {\n      //This node is visited after all of it's descendents. Allows us to look at immediate children to see if they have same color.\n      //For leaf nodes, there will be no children, so assign the color AND assign light\n      if (!node.children) {\n        node.color = getColor(node.data.id);\n      } else {\n        const childColors = node.children.map((x) => x.color);\n        const firstColor = node.children[0].color;\n        const allSame = firstColor !== null && childColors.every((color) => color === firstColor);\n        node.color = allSame ? firstColor : \"#666\";\n      }\n    });\n\n    // cumulativeBranchLength\n    clusterRoot.eachBefore((node) => {\n      const parentLen = node.parent?.cumulativeBranchLength ?? 0;\n      const cumulativeBranchLength = parentLen + (node.data.branch_length ?? 0);\n\n      if (cumulativeBranchLength > maxBranchLength) {\n        maxBranchLength = cumulativeBranchLength;\n      }\n      \n      node.cumulativeBranchLength = cumulativeBranchLength;\n    });\n    \n    // Add BranchLengthScaledRadius. Must come after cumulativeBranchLength\n    clusterRoot.descendants().forEach((node) => {\n      const branchLengthScaledRadius = getBranchLengthScaledY(\n        node.cumulativeBranchLength ?? 0,\n        maxBranchLength,\n        circleRadius\n      );\n\n      node.branchLengthScaledRadius = branchLengthScaledRadius;\n    })\n\n    // Base/Scaled X/Y. Must come after branchLengthScaledRadius assignment\n    clusterRoot.descendants().forEach((node) => {\n      const [baseNodeX, baseNodeY] = pointRadial(node.x, node.y);\n      const [scaledNodeX, scaledNodeY] = pointRadial(node.x, node.branchLengthScaledRadius ?? 0);\n\n      node.baseNodeX = baseNodeX;\n      node.baseNodeY = baseNodeY;\n      node.scaledNodeX = scaledNodeX;\n      node.scaledNodeY = scaledNodeY;\n    });\n\n    // Base/Scaled X/Y. Must come after branchLengthScaledRadius assignment\n    clusterRoot.descendants().forEach((node) => {\n      const [baseNodeX, baseNodeY] = pointRadial(node.x, node.y);\n      const [scaledNodeX, scaledNodeY] = pointRadial(node.x, node.branchLengthScaledRadius ?? 0);\n\n      node.baseNodeX = baseNodeX;\n      node.baseNodeY = baseNodeY;\n      node.scaledNodeX = scaledNodeX;\n      node.scaledNodeY = scaledNodeY;\n    });\n    \n    //Link Path gen must come after the above assignment of branchLengthScaledRadius\n    clusterRoot.descendants().forEach((node) => {\n      if (node.parent) {\n        const link = { source: node.parent, target: node };\n\n        const baseLinkPath = getLinkPath(link);\n        const scaledLinkPath = getScaledLinkPath(link);\n\n        node.baseLinkPath = baseLinkPath;\n        node.scaledLinkPath = scaledLinkPath;\n      }\n    });\n\n    clusterRoot.leaves().forEach((leaf) => {\n      leaf.baseLeafLinkExtension = {\n        x1: leaf.baseNodeX ?? 0,\n        x2: leaf.baseNodeX ?? 0,\n        y1: leaf.baseNodeY ?? 0,\n        y2: leaf.baseNodeY ?? 0,\n      };\n      leaf.scaledLeafLinkExtension = {\n        x1: leaf.scaledNodeX ?? 0,\n        x2: leaf.baseNodeX ?? 0,\n        y1: leaf.scaledNodeY ?? 0,\n        y2: leaf.baseNodeY ?? 0,\n      };\n      leaf.lightenedLinkExtColor = lightenHex(leaf.color ?? \"#000000\", 0.7);\n    })\n\n    // Highlighted state\n    clusterRoot.each((node) => {\n      //probably could do this more efficiently with .eachAfter\n      const isLeaf = !node.children\n      const isHighlighted = isLeaf ? highlighted.includes(node.data.id) : node.leaves().some(leaf => highlighted.includes(leaf.data.id))\n\n      node.linkStrokeWidth = isHighlighted ? linkStrokeWidth * 2 : linkStrokeWidth\n      node.labelStrokeWidth = isHighlighted ? 0.7 : 0\n    })\n    //Add ancestors and descendant IDs for faster static lookup on hover rerender\n    clusterRoot.each((node) => {\n      const ancestorIds = new Set(node.ancestors().map(node => node.data.id))\n      const descendantIds = new Set(node.descendants().map(node => node.data.id))\n      \n\n      node.ancestorIds = ancestorIds\n      node.descendantIds = descendantIds\n    })\n\n    if (leafOrder) {\n      const achievedOrder = clusterRoot.leaves().map((l) => l.data.id);\n      const treeLeafSet = new Set(achievedOrder);\n      const leafOrderSet = new Set(leafOrder);\n      const requestedFiltered = leafOrder.filter((id) => treeLeafSet.has(id));\n      const achievedFiltered = achievedOrder.filter((id) => leafOrderSet.has(id));\n      const mismatch = requestedFiltered.some((id, i) => id !== achievedFiltered[i]);\n      if (mismatch) {\n        console.error(\n          \"[PhyloTree] Requested leafOrder is not achievable given the tree topology.\\n\" +\n          \"Requested: \" + requestedFiltered.join(\", \") + \"\\n\" +\n          \"Achieved:  \" + achievedFiltered.join(\", \")\n        );\n      }\n    }\n\n    return clusterRoot;\n  }, [data, size, circleRadius, root, highlighted, linkStrokeWidth, leafOrder]);\n\n  const toggleBranchLength = useCallback(() => setEnableBranchLengths((prev) => !prev), []);\n\n  const handleLeafOnMouseMove = useCallback((event: React.MouseEvent<Element, MouseEvent>, node: TreeNode) => {\n    handleDebounceHover(event, node)\n    !node.children && showTooltip({\n      tooltipData: node.data,\n      tooltipLeft: event.clientX,\n      tooltipTop: event.clientY,\n    });\n    if (onLeafHoverChange) {\n      onLeafHoverChange(node.leaves().map(leaf => leaf.data.id))\n    }\n  }, []);\n\n  const handleLeafOnMouseLeave = useCallback((event: React.MouseEvent<Element, MouseEvent>, node: TreeNode) => {\n    handleDebounceHover(event, null)\n    hideTooltip();\n    if (onLeafHoverChange) {\n      onLeafHoverChange([])\n    }\n  }, []);\n\n  const treeContent = useMemo(() => {\n    return (\n      <Group top={TOTAL_INNER_RADIUS} left={TOTAL_INNER_RADIUS}>\n        <RenderTree\n   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