@weng-lab/visualization 2.6.0-beta.0 → 2.6.0

package/dist/visualization.es127.js

@@ -1,77 +1,61 @@
-import { jsx as A, jsxs as F } from "react/jsx-runtime";
-import { c as H } from "react/compiler-runtime";
-import B from "./visualization.es141.js";
-import I from "./visualization.es36.js";
-const R = (E) => {
-  const e = H(75), {
-    crossProps: f,
-    left: G,
-    top: L,
-    median: l,
-    firstQuartile: n,
-    thirdQuartile: c,
-    valueScale: t,
-    medianWidth: s,
-    tooltipData: w,
-    handleMouseMove: a,
-    handleCrossClick: d,
-    disableViolinPlot: i,
-    tooltip: r,
-    horizontal: o
-  } = E;
+import { jsx as l, jsxs as _ } from "react/jsx-runtime";
+import { c as k } from "react/compiler-runtime";
+import { Add as y, Remove as C, SettingsBackupRestore as Z, Timeline as z } from "@mui/icons-material";
+import { Tooltip as b, IconButton as g } from "@mui/material";
+const T = (u) => {
+  const e = k(22), {
+    scaleZoom: t,
+    resetZoom: x,
+    toggleBranchLength: S
+  } = u;
   let m;
-  e[0] !== o || e[1] !== c || e[2] !== t ? (m = o ? t(c) : 0, e[0] = o, e[1] = c, e[2] = t, e[3] = m) : m = e[3];
-  let k;
-  e[4] !== o || e[5] !== c || e[6] !== t ? (k = o ? 0 : t(c), e[4] = o, e[5] = c, e[6] = t, e[7] = k) : k = e[7];
-  let p;
-  e[8] !== m || e[9] !== k ? (p = {
-    x: m,
-    y: k
-  }, e[8] = m, e[9] = k, e[10] = p) : p = e[10];
-  let u;
-  e[11] !== n || e[12] !== o || e[13] !== t ? (u = o ? t(n) : 0, e[11] = n, e[12] = o, e[13] = t, e[14] = u) : u = e[14];
+  e[0] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (m = {
+    position: "absolute",
+    margin: "4px",
+    display: "flex",
+    flexDirection: "column",
+    alignItems: "flex-start",
+    background: "rgba(255, 255, 255, 0.6)",
+    backdropFilter: "blur(2px)",
+    WebkitBackdropFilter: "blur(2px)",
+    border: "1px solid rgba(255, 255, 255, 0.3)",
+    boxShadow: "0 2px 8px rgba(0, 0, 0, 0.1)"
+  }, e[0] = m) : m = e[0];
+  let o;
+  e[1] !== t ? (o = () => t({
+    scaleX: 1.2,
+    scaleY: 1.2
+  }), e[1] = t, e[2] = o) : o = e[2];
+  let a;
+  e[3] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (a = /* @__PURE__ */ l(y, { fontSize: "small" }), e[3] = a) : a = e[3];
+  let i;
+  e[4] !== o ? (i = /* @__PURE__ */ l(b, { title: "Zoom In", placement: "right", children: /* @__PURE__ */ l(g, { onClick: o, children: a }) }), e[4] = o, e[5] = i) : i = e[5];
+  let r;
+  e[6] !== t ? (r = () => t({
+    scaleX: 0.8333333333333334,
+    scaleY: 0.8333333333333334
+  }), e[6] = t, e[7] = r) : r = e[7];
+  let f;
+  e[8] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (f = /* @__PURE__ */ l(C, { fontSize: "small" }), e[8] = f) : f = e[8];
+  let n;
+  e[9] !== r ? (n = /* @__PURE__ */ l(b, { title: "Zoom Out", placement: "right", children: /* @__PURE__ */ l(g, { onClick: r, children: f }) }), e[9] = r, e[10] = n) : n = e[10];
   let h;
-  e[15] !== n || e[16] !== o || e[17] !== t ? (h = o ? 0 : t(n), e[15] = n, e[16] = o, e[17] = t, e[18] = h) : h = e[18];
-  let x;
-  e[19] !== u || e[20] !== h ? (x = {
-    x: u,
-    y: h
-  }, e[19] = u, e[20] = h, e[21] = x) : x = e[21];
-  const S = f?.color ?? "#000000", V = w === r && i ? (f?.stroke ?? 1) + 1 : f?.stroke ?? 1;
-  let v;
-  e[22] !== i || e[23] !== a || e[24] !== r ? (v = i ? (q) => a(q, r) : void 0, e[22] = i, e[23] = a, e[24] = r, e[25] = v) : v = e[25];
-  let C;
-  e[26] !== d || e[27] !== p || e[28] !== x || e[29] !== S || e[30] !== V || e[31] !== v ? (C = /* @__PURE__ */ A(B, { from: p, to: x, stroke: S, strokeWidth: V, onMouseMove: v, onClick: d }), e[26] = d, e[27] = p, e[28] = x, e[29] = S, e[30] = V, e[31] = v, e[32] = C) : C = e[32];
-  let M;
-  e[33] !== o || e[34] !== l || e[35] !== s || e[36] !== t ? (M = o ? t(l) : -s / 2, e[33] = o, e[34] = l, e[35] = s, e[36] = t, e[37] = M) : M = e[37];
-  let y;
-  e[38] !== o || e[39] !== l || e[40] !== s || e[41] !== t ? (y = o ? -s / 2 : t(l), e[38] = o, e[39] = l, e[40] = s, e[41] = t, e[42] = y) : y = e[42];
-  let P;
-  e[43] !== M || e[44] !== y ? (P = {
-    x: M,
-    y
-  }, e[43] = M, e[44] = y, e[45] = P) : P = e[45];
-  let W;
-  e[46] !== o || e[47] !== l || e[48] !== s || e[49] !== t ? (W = o ? t(l) : s / 2, e[46] = o, e[47] = l, e[48] = s, e[49] = t, e[50] = W) : W = e[50];
-  let j;
-  e[51] !== o || e[52] !== l || e[53] !== s || e[54] !== t ? (j = o ? s / 2 : t(l), e[51] = o, e[52] = l, e[53] = s, e[54] = t, e[55] = j) : j = e[55];
-  let Q;
-  e[56] !== W || e[57] !== j ? (Q = {
-    x: W,
-    y: j
-  }, e[56] = W, e[57] = j, e[58] = Q) : Q = e[58];
-  const $ = f?.medianColor ?? f?.color ?? "#000000", g = w === r && i ? (f?.stroke ?? 1) + 1 : f?.stroke ?? 1;
-  let b;
-  e[59] !== i || e[60] !== a || e[61] !== r ? (b = i ? (q) => a(q, r) : void 0, e[59] = i, e[60] = a, e[61] = r, e[62] = b) : b = e[62];
-  let z;
-  e[63] !== d || e[64] !== P || e[65] !== Q || e[66] !== $ || e[67] !== g || e[68] !== b ? (z = /* @__PURE__ */ A(B, { from: P, to: Q, stroke: $, strokeWidth: g, onMouseMove: b, onClick: d }), e[63] = d, e[64] = P, e[65] = Q, e[66] = $, e[67] = g, e[68] = b, e[69] = z) : z = e[69];
-  let D;
-  return e[70] !== G || e[71] !== C || e[72] !== z || e[73] !== L ? (D = /* @__PURE__ */ F(I, { left: G, top: L, children: [
-    C,
-    z
-  ] }), e[70] = G, e[71] = C, e[72] = z, e[73] = L, e[74] = D) : D = e[74], D;
+  e[11] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (h = /* @__PURE__ */ l(Z, { fontSize: "small" }), e[11] = h) : h = e[11];
+  let c;
+  e[12] !== x ? (c = /* @__PURE__ */ l(b, { title: "Reset Zoom", placement: "right", children: /* @__PURE__ */ l(g, { onClick: x, children: h }) }), e[12] = x, e[13] = c) : c = e[13];
+  let p;
+  e[14] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (p = /* @__PURE__ */ l(z, { fontSize: "small" }), e[14] = p) : p = e[14];
+  let s;
+  e[15] !== S ? (s = /* @__PURE__ */ l(b, { title: "Toggle Evolutionary Distance", placement: "right", children: /* @__PURE__ */ l(g, { onClick: S, children: p }) }), e[15] = S, e[16] = s) : s = e[16];
+  let d;
+  return e[17] !== s || e[18] !== i || e[19] !== n || e[20] !== c ? (d = /* @__PURE__ */ _("div", { style: m, children: [
+    i,
+    n,
+    c,
+    s
+  ] }), e[17] = s, e[18] = i, e[19] = n, e[20] = c, e[21] = d) : d = e[21], d;
 };
 export {
-  R as default
+  T as ControlPanel
 };
 //# sourceMappingURL=visualization.es127.js.map

package/dist/visualization.es127.js.map

@@ -1 +1 @@
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package/dist/visualization.es128.js

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-import { c as d } from "react/compiler-runtime";
-import u from "./visualization.es91.js";
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-    top: o,
-    data: r,
-    open: a,
-    pointTooltipBody: l
-  } = i;
-  if (!a || !r)
-    return null;
-  const c = e + 10;
+import { jsx as u } from "react/jsx-runtime";
+import { c as p } from "react/compiler-runtime";
+import { memo as g } from "react";
+import M from "./visualization.es37.js";
+const D = g((a) => {
+  const o = p(11), {
+    dragStart: r,
+    dragMove: s,
+    dragEnd: e,
+    scale: c,
+    isDragging: l
+  } = a;
+  let t;
+  o[0] !== e || o[1] !== l ? (t = () => {
+    l && e();
+  }, o[0] = e, o[1] = l, o[2] = t) : t = o[2];
   let n;
-  t[0] !== r || t[1] !== l ? (n = l && r.point ? l(r.point) : Object.entries(r).map(g), t[0] = r, t[1] = l, t[2] = n) : n = t[2];
-  let p;
-  return t[3] !== c || t[4] !== n || t[5] !== o ? (p = /* @__PURE__ */ s(u, { left: c, top: o, children: n }), t[3] = c, t[4] = n, t[5] = o, t[6] = p) : p = t[6], p;
-};
-function m(i) {
-  return i.toUpperCase();
-}
-function g(i) {
-  const [t, e] = i, o = t.replace(/([a-z])([A-Z])/g, "$1 $2").replace(/^./, m);
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-  ] }, t);
-}
+  o[3] !== c ? (n = (m) => {
+    const f = M(m) || {
+      x: 0,
+      y: 0
+    };
+    c({
+      scaleX: 1.5,
+      scaleY: 1.5,
+      point: f
+    });
+  }, o[3] = c, o[4] = n) : n = o[4];
+  let i;
+  return o[5] !== e || o[6] !== s || o[7] !== r || o[8] !== t || o[9] !== n ? (i = /* @__PURE__ */ u("rect", { width: "100%", height: "100%", fill: "transparent", onTouchStart: r, onTouchMove: s, onTouchEnd: e, onMouseDown: r, onMouseMove: s, onMouseUp: e, onMouseLeave: t, onDoubleClick: n }), o[5] = e, o[6] = s, o[7] = r, o[8] = t, o[9] = n, o[10] = i) : i = o[10], i;
+});
 export {
-  $ as default
+  D as ZoomSurface
 };
 //# sourceMappingURL=visualization.es128.js.map

package/dist/visualization.es128.js.map

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package/dist/visualization.es129.js

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-  let e;
-  if (i === void 0)
-    for (const n of d)
-      n != null && (e < n || e === void 0 && n >= n) && (e = n);
-  else {
-    let n = -1;
-    for (let f of d)
-      (f = i(f, ++n, d)) != null && (e < f || e === void 0 && f >= f) && (e = f);
-  }
-  return e;
-}
+import { jsx as e } from "react/jsx-runtime";
+import { useBranchLengthTransition as m } from "./visualization.es7.js";
+import { memo as a } from "react";
+import { motion as s } from "./visualization.es31.js";
+const c = a(function({
+  scaledLinkPath: o,
+  baseLinkPath: n,
+  color: r,
+  strokeWidth: i,
+  useBranchLengths: t
+}) {
+  return /* @__PURE__ */ e(s.path, { stroke: r, strokeWidth: i, fill: "none", initial: !1, strokeLinecap: "round", strokeLinejoin: "round", animate: {
+    d: t ? o : n
+  }, transition: {
+    d: m
+  } });
+});
 export {
-  l as default
+  c as TreeLink
 };
 //# sourceMappingURL=visualization.es129.js.map

package/dist/visualization.es129.js.map

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package/dist/visualization.es130.js

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-import { Tooltip as b, IconButton as g } from "@mui/material";
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-    resetZoom: x,
-    toggleBranchLength: S
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-    margin: "4px",
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-    boxShadow: "0 2px 8px rgba(0, 0, 0, 0.1)"
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+import { jsx as e } from "react/jsx-runtime";
+import { useBranchLengthTransition as m } from "./visualization.es7.js";
+import { memo as s } from "react";
+import { motion as a } from "./visualization.es31.js";
+const k = s(function({
+  useBranchLengths: n,
+  color: i,
+  baseLeafLinkExtension: o,
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+  strokeWidth: r
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 export {
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+  k as LeafLinkExtension
 };
 //# sourceMappingURL=visualization.es130.js.map

package/dist/visualization.es130.js.map

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+{"version":3,"file":"visualization.es130.js","sources":["../src/components/PhyloTree/LeafLinkExtension.tsx"],"sourcesContent":["import { motion } from \"framer-motion\";\nimport { useBranchLengthTransition } from \"./PhyloTree\";\nimport { memo } from \"react\";\nimport { TreeNode } from \"./types\";\n\n\nexport type LeafLinkExtensionProps = {\n  baseLeafLinkExtension: TreeNode[\"baseLeafLinkExtension\"]\n  scaledLeafLinkExtension: TreeNode[\"scaledLeafLinkExtension\"]\n  color: TreeNode[\"color\"];\n  strokeWidth: TreeNode[\"linkStrokeWidth\"]\n  useBranchLengths: boolean\n};\n\nexport const LeafLinkExtension = memo(function LinkExtension({\n  useBranchLengths,\n  color,\n  baseLeafLinkExtension,\n  scaledLeafLinkExtension,\n  strokeWidth\n}: LeafLinkExtensionProps) {\n\n  return (\n    <motion.line\n      strokeWidth={strokeWidth}\n      initial={false}\n      animate={useBranchLengths ? scaledLeafLinkExtension : baseLeafLinkExtension}\n      stroke={color}\n      transition={useBranchLengthTransition}\n    />\n  );\n});\n"],"names":["LeafLinkExtension","memo","useBranchLengths","color","baseLeafLinkExtension","scaledLeafLinkExtension","strokeWidth","jsx","motion","useBranchLengthTransition"],"mappings":";;;;AAcO,MAAMA,IAAoBC,EAAK,SAAuB;AAAA,EAC3DC,kBAAAA;AAAAA,EACAC,OAAAA;AAAAA,EACAC,uBAAAA;AAAAA,EACAC,yBAAAA;AAAAA,EACAC,aAAAA;AACsB,GAAG;AAEzB,SACE,gBAAAC,EAACC,EAAO,MAAP,EACC,aAAAF,GACA,SAAS,IACT,SAASJ,IAAmBG,IAA0BD,GACtD,QAAQD,GACR,YAAYM,GAA0B;AAG5C,CAAC;"}

package/dist/visualization.es131.js

@@ -1,35 +1,29 @@
-import { jsx as u } from "react/jsx-runtime";
-import { c as p } from "react/compiler-runtime";
-import { memo as g } from "react";
-import M from "./visualization.es52.js";
-const D = g((a) => {
-  const o = p(11), {
-    dragStart: r,
-    dragMove: s,
-    dragEnd: e,
-    scale: c,
-    isDragging: l
-  } = a;
-  let t;
-  o[0] !== e || o[1] !== l ? (t = () => {
-    l && e();
-  }, o[0] = e, o[1] = l, o[2] = t) : t = o[2];
-  let n;
-  o[3] !== c ? (n = (m) => {
-    const f = M(m) || {
-      x: 0,
-      y: 0
-    };
-    c({
-      scaleX: 1.5,
-      scaleY: 1.5,
-      point: f
-    });
-  }, o[3] = c, o[4] = n) : n = o[4];
-  let i;
-  return o[5] !== e || o[6] !== s || o[7] !== r || o[8] !== t || o[9] !== n ? (i = /* @__PURE__ */ u("rect", { width: "100%", height: "100%", fill: "transparent", onTouchStart: r, onTouchMove: s, onTouchEnd: e, onMouseDown: r, onMouseMove: s, onMouseUp: e, onMouseLeave: t, onDoubleClick: n }), o[5] = e, o[6] = s, o[7] = r, o[8] = t, o[9] = n, o[10] = i) : i = o[10], i;
+import { jsx as u, jsxs as k } from "react/jsx-runtime";
+import { c as g } from "react/compiler-runtime";
+import { memo as j } from "react";
+import O from "./visualization.es30.js";
+const F = j(function(L) {
+  const t = g(16), {
+    nodeX: N,
+    color: e,
+    baseNodeX: f,
+    baseNodeY: i,
+    label: a,
+    fontSize: n,
+    fontFamily: c,
+    strokeWidth: m
+  } = L, s = N * 180 / Math.PI - 90, d = s > 90 || s < -90, $ = d ? s + 180 : s, p = d ? "end" : "start", x = d ? -6 : 6, b = `rotate(${$}) translate(0, ${(n ?? 2.4) / 3})`, h = a === "Human" ? `${a} ★★★` : a;
+  let o;
+  t[0] !== e || t[1] !== c || t[2] !== n || t[3] !== m || t[4] !== b || t[5] !== h || t[6] !== p || t[7] !== x ? (o = /* @__PURE__ */ u("text", { fontSize: n, fontFamily: c, fill: e, stroke: e, strokeWidth: m, paintOrder: "stroke", transform: b, textAnchor: p, x, children: h }), t[0] = e, t[1] = c, t[2] = n, t[3] = m, t[4] = b, t[5] = h, t[6] = p, t[7] = x, t[8] = o) : o = t[8];
+  let r;
+  t[9] !== e ? (r = /* @__PURE__ */ u("circle", { r: 1.5, fill: e }), t[9] = e, t[10] = r) : r = t[10];
+  let l;
+  return t[11] !== f || t[12] !== i || t[13] !== o || t[14] !== r ? (l = /* @__PURE__ */ k(O, { top: i, left: f, children: [
+    o,
+    r
+  ] }), t[11] = f, t[12] = i, t[13] = o, t[14] = r, t[15] = l) : l = t[15], l;
 });
 export {
-  D as ZoomSurface
+  F as LeafNodeLabel
 };
 //# sourceMappingURL=visualization.es131.js.map

package/dist/visualization.es131.js.map

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package/dist/visualization.es132.js

@@ -1,21 +1,5 @@
-import { jsx as e } from "react/jsx-runtime";
-import { useBranchLengthTransition as m } from "./visualization.es7.js";
-import { memo as a } from "react";
-import { motion as s } from "./visualization.es31.js";
-const c = a(function({
-  scaledLinkPath: o,
-  baseLinkPath: n,
-  color: r,
-  strokeWidth: i,
-  useBranchLengths: t
-}) {
-  return /* @__PURE__ */ e(s.path, { stroke: r, strokeWidth: i, fill: "none", initial: !1, strokeLinecap: "round", strokeLinejoin: "round", animate: {
-    d: t ? o : n
-  }, transition: {
-    d: m
-  } });
-});
+var e = { exports: {} };
 export {
-  c as TreeLink
+  e as __module
 };
 //# sourceMappingURL=visualization.es132.js.map

package/dist/visualization.es132.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es132.js","sources":["../src/components/PhyloTree/TreeLink.tsx"],"sourcesContent":["import { TreeNode } from \"./types\";\nimport { motion } from \"framer-motion\";\nimport { useBranchLengthTransition } from \"./PhyloTree\";\nimport { memo } from \"react\";\n\nexport type TreeLinkProps = {\n  scaledLinkPath: TreeNode[\"scaledLinkPath\"]\n  baseLinkPath: TreeNode[\"baseLinkPath\"]\n  color: TreeNode[\"color\"]\n  strokeWidth: TreeNode[\"linkStrokeWidth\"]\n  useBranchLengths: boolean;\n};\n\n/**\n * Link from node to its parent\n */\nexport const TreeLink = memo(function TreeLink({\n  scaledLinkPath,\n  baseLinkPath,\n  color,\n  strokeWidth,\n  useBranchLengths,\n}: TreeLinkProps) {\n  return (\n    <motion.path\n      stroke={color}\n      strokeWidth={strokeWidth}\n      fill=\"none\"\n      initial={false}\n      strokeLinecap={\"round\"}\n      strokeLinejoin={\"round\"}\n      animate={{\n        d: useBranchLengths ? scaledLinkPath : baseLinkPath,\n      }}\n      transition={{\n        d: useBranchLengthTransition,\n      }}\n    />\n  );\n})\n"],"names":["TreeLink","memo","scaledLinkPath","baseLinkPath","color","strokeWidth","useBranchLengths","jsx","motion","d","useBranchLengthTransition"],"mappings":";;;;AAgBO,MAAMA,IAAWC,EAAK,SAAkB;AAAA,EAC7CC,gBAAAA;AAAAA,EACAC,cAAAA;AAAAA,EACAC,OAAAA;AAAAA,EACAC,aAAAA;AAAAA,EACAC,kBAAAA;AACa,GAAG;AAChB,SACE,gBAAAC,EAACC,EAAO,MAAP,EACC,QAAQJ,GACR,aAAAC,GACA,MAAK,QACL,SAAS,IACT,eAAe,SACf,gBAAgB,SAChB,SAAS;AAAA,IACPI,GAAGH,IAAmBJ,IAAiBC;AAAAA,EAAAA,GAEzC,YAAY;AAAA,IACVM,GAAGC;AAAAA,EAAAA,GACH;AAGR,CAAC;"}
+{"version":3,"file":"visualization.es132.js","sources":[],"sourcesContent":[],"names":[],"mappings":";"}