@weng-lab/visualization 2.6.0-beta.0 → 2.6.0

package/dist/visualization.es98.js

@@ -1,27 +1,225 @@
-import i from "./visualization.es30.js";
-const u = 0.12, r = "none";
-function o(e, l) {
-  const [n, a] = l;
-  return i({
-    range: e,
-    domain: e.map((c, t) => n + t * (a - n) / (e.length - 1)),
-    // Held at the end colors rather than extrapolated past them, which interpolates the RGB channels
-    // out of range into colors that aren't on the gradient at all.
-    clamp: !0
-  });
-}
-const p = (e, l) => !!l && e != null && (e < l[0] || e > l[1]);
-function s(e, l, n = !1) {
-  const a = e == null;
-  return {
-    fill: a || l === void 0 ? r : l,
-    fillOpacity: a ? 0 : n ? u : 1
-  };
+import { __module as O } from "./visualization.es99.js";
+import { __require as q } from "./visualization.es100.js";
+var j = O.exports, x;
+function W() {
+  return x ? O.exports : (x = 1, (function(b, Q) {
+    (function(c, d) {
+      b.exports = d(q());
+    })(j, function(F) {
+      return (
+        /******/
+        (function(c) {
+          var d = {};
+          function o(i) {
+            if (d[i])
+              return d[i].exports;
+            var n = d[i] = {
+              /******/
+              i,
+              /******/
+              l: !1,
+              /******/
+              exports: {}
+              /******/
+            };
+            return c[i].call(n.exports, n, n.exports, o), n.l = !0, n.exports;
+          }
+          return o.m = c, o.c = d, o.i = function(i) {
+            return i;
+          }, o.d = function(i, n, s) {
+            o.o(i, n) || Object.defineProperty(i, n, {
+              /******/
+              configurable: !1,
+              /******/
+              enumerable: !0,
+              /******/
+              get: s
+              /******/
+            });
+          }, o.n = function(i) {
+            var n = i && i.__esModule ? (
+              /******/
+              function() {
+                return i.default;
+              }
+            ) : (
+              /******/
+              function() {
+                return i;
+              }
+            );
+            return o.d(n, "a", n), n;
+          }, o.o = function(i, n) {
+            return Object.prototype.hasOwnProperty.call(i, n);
+          }, o.p = "", o(o.s = 1);
+        })([
+          /* 0 */
+          /***/
+          (function(c, d) {
+            c.exports = F;
+          }),
+          /* 1 */
+          /***/
+          (function(c, d, o) {
+            var i = o(0).layoutBase.LayoutConstants, n = o(0).layoutBase.FDLayoutConstants, s = o(0).CoSEConstants, H = o(0).CoSELayout, G = o(0).CoSENode, B = o(0).layoutBase.PointD, V = o(0).layoutBase.DimensionD, Y = {
+              // Called on `layoutready`
+              ready: function() {
+              },
+              // Called on `layoutstop`
+              stop: function() {
+              },
+              // 'draft', 'default' or 'proof" 
+              // - 'draft' fast cooling rate 
+              // - 'default' moderate cooling rate 
+              // - "proof" slow cooling rate
+              quality: "default",
+              // include labels in node dimensions
+              nodeDimensionsIncludeLabels: !1,
+              // number of ticks per frame; higher is faster but more jerky
+              refresh: 30,
+              // Whether to fit the network view after when done
+              fit: !0,
+              // Padding on fit
+              padding: 10,
+              // Whether to enable incremental mode
+              randomize: !0,
+              // Node repulsion (non overlapping) multiplier
+              nodeRepulsion: 4500,
+              // Ideal edge (non nested) length
+              idealEdgeLength: 50,
+              // Divisor to compute edge forces
+              edgeElasticity: 0.45,
+              // Nesting factor (multiplier) to compute ideal edge length for nested edges
+              nestingFactor: 0.1,
+              // Gravity force (constant)
+              gravity: 0.25,
+              // Maximum number of iterations to perform
+              numIter: 2500,
+              // For enabling tiling
+              tile: !0,
+              // Type of layout animation. The option set is {'during', 'end', false}
+              animate: "end",
+              // Duration for animate:end
+              animationDuration: 500,
+              // Represents the amount of the vertical space to put between the zero degree members during the tiling operation(can also be a function)
+              tilingPaddingVertical: 10,
+              // Represents the amount of the horizontal space to put between the zero degree members during the tiling operation(can also be a function)
+              tilingPaddingHorizontal: 10,
+              // Gravity range (constant) for compounds
+              gravityRangeCompound: 1.5,
+              // Gravity force (constant) for compounds
+              gravityCompound: 1,
+              // Gravity range (constant)
+              gravityRange: 3.8,
+              // Initial cooling factor for incremental layout
+              initialEnergyOnIncremental: 0.5
+            };
+            function h(u, t) {
+              var l = {};
+              for (var r in u)
+                l[r] = u[r];
+              for (var r in t)
+                l[r] = t[r];
+              return l;
+            }
+            function p(u) {
+              this.options = h(Y, u), w(this.options);
+            }
+            var w = function(t) {
+              t.nodeRepulsion != null && (s.DEFAULT_REPULSION_STRENGTH = n.DEFAULT_REPULSION_STRENGTH = t.nodeRepulsion), t.idealEdgeLength != null && (s.DEFAULT_EDGE_LENGTH = n.DEFAULT_EDGE_LENGTH = t.idealEdgeLength), t.edgeElasticity != null && (s.DEFAULT_SPRING_STRENGTH = n.DEFAULT_SPRING_STRENGTH = t.edgeElasticity), t.nestingFactor != null && (s.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = n.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = t.nestingFactor), t.gravity != null && (s.DEFAULT_GRAVITY_STRENGTH = n.DEFAULT_GRAVITY_STRENGTH = t.gravity), t.numIter != null && (s.MAX_ITERATIONS = n.MAX_ITERATIONS = t.numIter), t.gravityRange != null && (s.DEFAULT_GRAVITY_RANGE_FACTOR = n.DEFAULT_GRAVITY_RANGE_FACTOR = t.gravityRange), t.gravityCompound != null && (s.DEFAULT_COMPOUND_GRAVITY_STRENGTH = n.DEFAULT_COMPOUND_GRAVITY_STRENGTH = t.gravityCompound), t.gravityRangeCompound != null && (s.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = n.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = t.gravityRangeCompound), t.initialEnergyOnIncremental != null && (s.DEFAULT_COOLING_FACTOR_INCREMENTAL = n.DEFAULT_COOLING_FACTOR_INCREMENTAL = t.initialEnergyOnIncremental), t.quality == "draft" ? i.QUALITY = 0 : t.quality == "proof" ? i.QUALITY = 2 : i.QUALITY = 1, s.NODE_DIMENSIONS_INCLUDE_LABELS = n.NODE_DIMENSIONS_INCLUDE_LABELS = i.NODE_DIMENSIONS_INCLUDE_LABELS = t.nodeDimensionsIncludeLabels, s.DEFAULT_INCREMENTAL = n.DEFAULT_INCREMENTAL = i.DEFAULT_INCREMENTAL = !t.randomize, s.ANIMATE = n.ANIMATE = i.ANIMATE = t.animate, s.TILE = t.tile, s.TILING_PADDING_VERTICAL = typeof t.tilingPaddingVertical == "function" ? t.tilingPaddingVertical.call() : t.tilingPaddingVertical, s.TILING_PADDING_HORIZONTAL = typeof t.tilingPaddingHorizontal == "function" ? t.tilingPaddingHorizontal.call() : t.tilingPaddingHorizontal;
+            };
+            p.prototype.run = function() {
+              var u, t, l = this.options;
+              this.idToLNode = {};
+              var r = this.layout = new H(), a = this;
+              a.stopped = !1, this.cy = this.options.cy, this.cy.trigger({ type: "layoutstart", layout: this });
+              var e = r.newGraphManager();
+              this.gm = e;
+              var g = this.options.eles.nodes(), f = this.options.eles.edges();
+              this.root = e.addRoot(), this.processChildrenList(this.root, this.getTopMostNodes(g), r);
+              for (var E = 0; E < f.length; E++) {
+                var A = f[E], v = this.idToLNode[A.data("source")], D = this.idToLNode[A.data("target")];
+                if (v !== D && v.getEdgesBetween(D).length == 0) {
+                  var N = e.add(r.newEdge(), v, D);
+                  N.id = A.id();
+                }
+              }
+              var U = function(L, m) {
+                typeof L == "number" && (L = m);
+                var I = L.data("id"), R = a.idToLNode[I];
+                return {
+                  x: R.getRect().getCenterX(),
+                  y: R.getRect().getCenterY()
+                };
+              }, z = function S() {
+                for (var L = function() {
+                  l.fit && l.cy.fit(l.eles, l.padding), u || (u = !0, a.cy.one("layoutready", l.ready), a.cy.trigger({ type: "layoutready", layout: a }));
+                }, m = a.options.refresh, I, R = 0; R < m && !I; R++)
+                  I = a.stopped || a.layout.tick();
+                if (I) {
+                  r.checkLayoutSuccess() && !r.isSubLayout && r.doPostLayout(), r.tilingPostLayout && r.tilingPostLayout(), r.isLayoutFinished = !0, a.options.eles.nodes().positions(U), L(), a.cy.one("layoutstop", a.options.stop), a.cy.trigger({ type: "layoutstop", layout: a }), t && cancelAnimationFrame(t), u = !1;
+                  return;
+                }
+                var C = a.layout.getPositionsData();
+                l.eles.nodes().positions(function(y, k) {
+                  if (typeof y == "number" && (y = k), !y.isParent()) {
+                    for (var M = y.id(), T = C[M], _ = y; T == null && (T = C[_.data("parent")] || C["DummyCompound_" + _.data("parent")], C[M] = T, _ = _.parent()[0], _ != null); )
+                      ;
+                    return T != null ? {
+                      x: T.x,
+                      y: T.y
+                    } : {
+                      x: y.position("x"),
+                      y: y.position("y")
+                    };
+                  }
+                }), L(), t = requestAnimationFrame(S);
+              };
+              return r.addListener("layoutstarted", function() {
+                a.options.animate === "during" && (t = requestAnimationFrame(z));
+              }), r.runLayout(), this.options.animate !== "during" && (a.options.eles.nodes().not(":parent").layoutPositions(a, a.options, U), u = !1), this;
+            }, p.prototype.getTopMostNodes = function(u) {
+              for (var t = {}, l = 0; l < u.length; l++)
+                t[u[l].id()] = !0;
+              var r = u.filter(function(a, e) {
+                typeof a == "number" && (a = e);
+                for (var g = a.parent()[0]; g != null; ) {
+                  if (t[g.id()])
+                    return !1;
+                  g = g.parent()[0];
+                }
+                return !0;
+              });
+              return r;
+            }, p.prototype.processChildrenList = function(u, t, l) {
+              for (var r = t.length, a = 0; a < r; a++) {
+                var e = t[a], g = e.children(), f, E = e.layoutDimensions({
+                  nodeDimensionsIncludeLabels: this.options.nodeDimensionsIncludeLabels
+                });
+                if (e.outerWidth() != null && e.outerHeight() != null ? f = u.add(new G(l.graphManager, new B(e.position("x") - E.w / 2, e.position("y") - E.h / 2), new V(parseFloat(E.w), parseFloat(E.h)))) : f = u.add(new G(this.graphManager)), f.id = e.data("id"), f.paddingLeft = parseInt(e.css("padding")), f.paddingTop = parseInt(e.css("padding")), f.paddingRight = parseInt(e.css("padding")), f.paddingBottom = parseInt(e.css("padding")), this.options.nodeDimensionsIncludeLabels && e.isParent()) {
+                  var A = e.boundingBox({ includeLabels: !0, includeNodes: !1 }).w, v = e.boundingBox({ includeLabels: !0, includeNodes: !1 }).h, D = e.css("text-halign");
+                  f.labelWidth = A, f.labelHeight = v, f.labelPos = D;
+                }
+                if (this.idToLNode[e.data("id")] = f, isNaN(f.rect.x) && (f.rect.x = 0), isNaN(f.rect.y) && (f.rect.y = 0), g != null && g.length > 0) {
+                  var N;
+                  N = l.getGraphManager().add(l.newGraph(), f), this.processChildrenList(N, g, l);
+                }
+              }
+            }, p.prototype.stop = function() {
+              return this.stopped = !0, this;
+            };
+            var P = function(t) {
+              t("layout", "cose-bilkent", p);
+            };
+            typeof cytoscape < "u" && P(cytoscape), c.exports = P;
+          })
+          /******/
+        ])
+      );
+    });
+  })(O), O.exports);
 }
 export {
-  u as DIMMED_OPACITY,
-  o as getHeatmapColorScale,
-  p as isOutsideRange,
-  s as resolveCellAppearance
+  W as __require
 };
 //# sourceMappingURL=visualization.es98.js.map

package/dist/visualization.es98.js.map

@@ -1 +1 @@
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higher is faster but more jerky\n  refresh: 30,\n  // Whether to fit the network view after when done\n  fit: true,\n  // Padding on fit\n  padding: 10,\n  // Whether to enable incremental mode\n  randomize: true,\n  // Node repulsion (non overlapping) multiplier\n  nodeRepulsion: 4500,\n  // Ideal edge (non nested) length\n  idealEdgeLength: 50,\n  // Divisor to compute edge forces\n  edgeElasticity: 0.45,\n  // Nesting factor (multiplier) to compute ideal edge length for nested edges\n  nestingFactor: 0.1,\n  // Gravity force (constant)\n  gravity: 0.25,\n  // Maximum number of iterations to perform\n  numIter: 2500,\n  // For enabling tiling\n  tile: true,\n  // Type of layout animation. The option set is {'during', 'end', false}\n  animate: 'end',\n  // Duration for animate:end\n  animationDuration: 500,\n  // Represents the amount of the vertical space to put between the zero degree members during the tiling operation(can also be a function)\n  tilingPaddingVertical: 10,\n  // Represents the amount of the horizontal space to put between the zero degree members during the tiling operation(can also be a function)\n  tilingPaddingHorizontal: 10,\n  // Gravity range (constant) for compounds\n  gravityRangeCompound: 1.5,\n  // Gravity force (constant) for compounds\n  gravityCompound: 1.0,\n  // Gravity range (constant)\n  gravityRange: 3.8,\n  // Initial cooling factor for incremental layout\n  initialEnergyOnIncremental: 0.5\n};\n\nfunction extend(defaults, options) {\n  var obj = {};\n\n  for (var i in defaults) {\n    obj[i] = defaults[i];\n  }\n\n  for (var i in options) {\n    obj[i] = options[i];\n  }\n\n  return obj;\n};\n\nfunction _CoSELayout(_options) {\n  this.options = extend(defaults, _options);\n  getUserOptions(this.options);\n}\n\nvar getUserOptions = function getUserOptions(options) {\n  if (options.nodeRepulsion != null) CoSEConstants.DEFAULT_REPULSION_STRENGTH = FDLayoutConstants.DEFAULT_REPULSION_STRENGTH = options.nodeRepulsion;\n  if (options.idealEdgeLength != null) CoSEConstants.DEFAULT_EDGE_LENGTH = FDLayoutConstants.DEFAULT_EDGE_LENGTH = options.idealEdgeLength;\n  if (options.edgeElasticity != null) CoSEConstants.DEFAULT_SPRING_STRENGTH = FDLayoutConstants.DEFAULT_SPRING_STRENGTH = options.edgeElasticity;\n  if (options.nestingFactor != null) CoSEConstants.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = FDLayoutConstants.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = options.nestingFactor;\n  if (options.gravity != null) CoSEConstants.DEFAULT_GRAVITY_STRENGTH = FDLayoutConstants.DEFAULT_GRAVITY_STRENGTH = options.gravity;\n  if (options.numIter != null) CoSEConstants.MAX_ITERATIONS = FDLayoutConstants.MAX_ITERATIONS = options.numIter;\n  if (options.gravityRange != null) CoSEConstants.DEFAULT_GRAVITY_RANGE_FACTOR = FDLayoutConstants.DEFAULT_GRAVITY_RANGE_FACTOR = options.gravityRange;\n  if (options.gravityCompound != null) CoSEConstants.DEFAULT_COMPOUND_GRAVITY_STRENGTH = FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_STRENGTH = options.gravityCompound;\n  if (options.gravityRangeCompound != null) CoSEConstants.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = options.gravityRangeCompound;\n  if (options.initialEnergyOnIncremental != null) CoSEConstants.DEFAULT_COOLING_FACTOR_INCREMENTAL = FDLayoutConstants.DEFAULT_COOLING_FACTOR_INCREMENTAL = options.initialEnergyOnIncremental;\n\n  if (options.quality == 'draft') LayoutConstants.QUALITY = 0;else if (options.quality == 'proof') LayoutConstants.QUALITY = 2;else LayoutConstants.QUALITY = 1;\n\n  CoSEConstants.NODE_DIMENSIONS_INCLUDE_LABELS = FDLayoutConstants.NODE_DIMENSIONS_INCLUDE_LABELS = LayoutConstants.NODE_DIMENSIONS_INCLUDE_LABELS = options.nodeDimensionsIncludeLabels;\n  CoSEConstants.DEFAULT_INCREMENTAL = FDLayoutConstants.DEFAULT_INCREMENTAL = LayoutConstants.DEFAULT_INCREMENTAL = !options.randomize;\n  CoSEConstants.ANIMATE = FDLayoutConstants.ANIMATE = LayoutConstants.ANIMATE = options.animate;\n  CoSEConstants.TILE = options.tile;\n  CoSEConstants.TILING_PADDING_VERTICAL = typeof options.tilingPaddingVertical === 'function' ? options.tilingPaddingVertical.call() : options.tilingPaddingVertical;\n  CoSEConstants.TILING_PADDING_HORIZONTAL = typeof options.tilingPaddingHorizontal === 'function' ? options.tilingPaddingHorizontal.call() : options.tilingPaddingHorizontal;\n};\n\n_CoSELayout.prototype.run = function () {\n  var ready;\n  var frameId;\n  var options = this.options;\n  var idToLNode = this.idToLNode = {};\n  var layout = this.layout = new CoSELayout();\n  var self = this;\n\n  self.stopped = false;\n\n  this.cy = this.options.cy;\n\n  this.cy.trigger({ type: 'layoutstart', layout: this });\n\n  var gm = layout.newGraphManager();\n  this.gm = gm;\n\n  var nodes = this.options.eles.nodes();\n  var edges = this.options.eles.edges();\n\n  this.root = gm.addRoot();\n  this.processChildrenList(this.root, this.getTopMostNodes(nodes), layout);\n\n  for (var i = 0; i < edges.length; i++) {\n    var edge = edges[i];\n    var sourceNode = this.idToLNode[edge.data(\"source\")];\n    var targetNode = this.idToLNode[edge.data(\"target\")];\n    if (sourceNode !== targetNode && sourceNode.getEdgesBetween(targetNode).length == 0) {\n      var e1 = gm.add(layout.newEdge(), sourceNode, targetNode);\n      e1.id = edge.id();\n    }\n  }\n\n  var getPositions = function getPositions(ele, i) {\n    if (typeof ele === \"number\") {\n      ele = i;\n    }\n    var theId = ele.data('id');\n    var lNode = self.idToLNode[theId];\n\n    return {\n      x: lNode.getRect().getCenterX(),\n      y: lNode.getRect().getCenterY()\n    };\n  };\n\n  /*\n   * Reposition nodes in iterations animatedly\n   */\n  var iterateAnimated = function iterateAnimated() {\n    // Thigs to perform after nodes are repositioned on screen\n    var afterReposition = function afterReposition() {\n      if (options.fit) {\n        options.cy.fit(options.eles, options.padding);\n      }\n\n      if (!ready) {\n        ready = true;\n        self.cy.one('layoutready', options.ready);\n        self.cy.trigger({ type: 'layoutready', layout: self });\n      }\n    };\n\n    var ticksPerFrame = self.options.refresh;\n    var isDone;\n\n    for (var i = 0; i < ticksPerFrame && !isDone; i++) {\n      isDone = self.stopped || self.layout.tick();\n    }\n\n    // If layout is done\n    if (isDone) {\n      // If the layout is not a sublayout and it is successful perform post layout.\n      if (layout.checkLayoutSuccess() && !layout.isSubLayout) {\n        layout.doPostLayout();\n      }\n\n      // If layout has a tilingPostLayout function property call it.\n      if (layout.tilingPostLayout) {\n        layout.tilingPostLayout();\n      }\n\n      layout.isLayoutFinished = true;\n\n      self.options.eles.nodes().positions(getPositions);\n\n      afterReposition();\n\n      // trigger layoutstop when the layout stops (e.g. finishes)\n      self.cy.one('layoutstop', self.options.stop);\n      self.cy.trigger({ type: 'layoutstop', layout: self });\n\n      if (frameId) {\n        cancelAnimationFrame(frameId);\n      }\n\n      ready = false;\n      return;\n    }\n\n    var animationData = self.layout.getPositionsData(); // Get positions of layout nodes note that all nodes may not be layout nodes because of tiling\n\n    // Position nodes, for the nodes whose id does not included in data (because they are removed from their parents and included in dummy compounds)\n    // use position of their ancestors or dummy ancestors\n    options.eles.nodes().positions(function (ele, i) {\n      if (typeof ele === \"number\") {\n        ele = i;\n      }\n      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  if (typeof ele === \"number\") {\n      ele = i;\n    }\n    var parent = ele.parent()[0];\n    while (parent != null) {\n      if (nodesMap[parent.id()]) {\n        return false;\n      }\n      parent = parent.parent()[0];\n    }\n    return true;\n  });\n\n  return roots;\n};\n\n_CoSELayout.prototype.processChildrenList = function (parent, children, layout) {\n  var size = children.length;\n  for (var i = 0; i < size; i++) {\n    var theChild = children[i];\n    var children_of_children = theChild.children();\n    var theNode;\n\n    var dimensions = theChild.layoutDimensions({\n      nodeDimensionsIncludeLabels: this.options.nodeDimensionsIncludeLabels\n    });\n\n    if (theChild.outerWidth() != null && theChild.outerHeight() != null) {\n      theNode = parent.add(new CoSENode(layout.graphManager, new PointD(theChild.position('x') - dimensions.w / 2, theChild.position('y') - dimensions.h / 2), new DimensionD(parseFloat(dimensions.w), parseFloat(dimensions.h))));\n    } else {\n  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package/dist/visualization.es99.js

@@ -1,87 +1,5 @@
-const d = "#1a1c1e", C = "#ffffff";
-const x = (n) => `${n.row}-${n.column}`, y = (n) => {
-  const [f, r] = n.split("-").map(Number);
-  return {
-    row: f,
-    column: r
-  };
-};
-function* $(n, {
-  colStart: f,
-  colEnd: r,
-  rowStart: i,
-  rowEnd: H
-}) {
-  if ((r - f + 1) * (H - i + 1) <= n.size) {
-    for (let t = f; t <= r; t++) for (let o = i; o <= H; o++) n.has(x({
-      row: o,
-      column: t
-    })) && (yield {
-      row: o,
-      column: t
-    });
-    return;
-  }
-  for (const t of n) {
-    const o = y(t);
-    o.column >= f && o.column <= r && o.row >= i && o.row <= H && (yield o);
-  }
-}
-function v(n, f, r, i) {
-  const {
-    xScale: H,
-    cellYScale: t,
-    binWidth: o,
-    binHeight: E,
-    gap: e
-  } = r, c = (s, l) => n.has(x({
-    row: s,
-    column: l
-  })), u = [], R = [], _ = (s, l, A, a, M, m) => s.push({
-    x: A,
-    y: a,
-    width: M,
-    height: m,
-    fill: l
-  });
-  for (const {
-    row: s,
-    column: l
-  } of f) {
-    if (!c(s, l)) continue;
-    const A = H(l), a = A + o - e, M = t(s) + e, m = t(s) + E, I = A - 2 < 0 ? A + 2 : A, O = a + 2 > i.width ? a - 2 : a, T = M - 2 < 0 ? M + 2 : M, h = m + 2 > i.height ? m - 2 : m, w = c(s + 1, l), S = c(s - 1, l), F = c(s, l - 1), N = c(s, l + 1), D = (k) => k ? e : 2, W = (k) => k ? e : 0, p = [I - D(F), O - I + D(F) + D(N)], L = [T - D(w), h - T + D(w) + D(S)], g = [I - W(F), O - I + W(F) + W(N)], b = [T - W(w), h - T + W(w) + W(S)];
-    w || (_(u, d, p[0], T - 2, p[1], 2), _(R, C, g[0], T, g[1], 1)), S || (_(u, d, p[0], h, p[1], 2), _(R, C, g[0], h - 1, g[1], 1)), F || (_(u, d, I - 2, L[0], 2, L[1]), _(R, C, I, b[0], 1, b[1])), N || (_(u, d, O, L[0], 2, L[1]), _(R, C, O - 1, b[0], 1, b[1]));
-  }
-  return [...u, ...R];
-}
-const z = {
-  columns: /* @__PURE__ */ new Set(),
-  rows: /* @__PURE__ */ new Set()
-};
-function B(n, f, r) {
-  if (!n?.size) return z;
-  const i = [...n].map(y), H = /* @__PURE__ */ new Map(), t = /* @__PURE__ */ new Map();
-  for (const {
-    row: e,
-    column: c
-  } of i)
-    H.set(c, (H.get(c) ?? 0) + 1), t.set(e, (t.get(e) ?? 0) + 1);
-  const o = /* @__PURE__ */ new Set(), E = /* @__PURE__ */ new Set();
-  for (const {
-    row: e,
-    column: c
-  } of i)
-    (t.get(e) ?? 0) < f && o.add(c), (H.get(c) ?? 0) < r && E.add(e);
-  return {
-    columns: o,
-    rows: E
-  };
-}
+var e = { exports: {} };
 export {
-  d as SELECTION_COLOR,
-  x as cellKey,
-  $ as selectedCellsIn,
-  v as selectionFrame,
-  B as selectionMarks
+  e as __module
 };
 //# sourceMappingURL=visualization.es99.js.map

package/dist/visualization.es99.js.map

@@ -1 +1 @@
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Cells keep their own colors, so the rest of the grid can\n * still be read for what to select next.\n */\n\nimport type { HeatmapCellId } from \"./types\";\n\n/** The frame's dark line, and the white one just inside it that holds it against a dark cell. */\nexport const SELECTION_COLOR = \"#1a1c1e\";\nconst HALO_COLOR = \"#ffffff\";\n/** Laid outside the selected cells: at the default gap of 2 it fills the gap and covers no cell. */\nconst FRAME_WIDTH = 2;\nconst HALO_WIDTH = 1;\n\nexport type SelectionBand = { x: number; y: number; width: number; height: number; fill: string };\n\ntype FrameGeometry = {\n  xScale: (column: number) => number;\n  cellYScale: (row: number) => number;\n  binWidth: number;\n  binHeight: number;\n  gap: number;\n};\n\ntype GridBounds = { width: number; height: number };\n\nexport const cellKey = (cell: HeatmapCellId) => `${cell.row}-${cell.column}`;\n\nconst parseKey = (key: string): HeatmapCellId => {\n  const [row, column] = key.split(\"-\").map(Number);\n  return { row, column };\n};\n\n/** The selected cells within a block, walking whichever of the block and the selection is smaller. */\nexport function* selectedCellsIn(\n  selectedKeys: Set<string>,\n  { colStart, colEnd, rowStart, rowEnd }: { colStart: number; colEnd: number; rowStart: number; rowEnd: number }\n): Generator<HeatmapCellId> {\n  if ((colEnd - colStart + 1) * (rowEnd - rowStart + 1) <= selectedKeys.size) {\n    for (let column = colStart; column <= colEnd; column++)\n      for (let row = rowStart; row <= rowEnd; row++) if (selectedKeys.has(cellKey({ row, column }))) yield { row, column };\n    return;\n  }\n  for (const key of selectedKeys) {\n    const cell = parseKey(key);\n    if (cell.column >= colStart && cell.column <= colEnd && cell.row >= rowStart && cell.row <= rowEnd) yield cell;\n  }\n}\n\n/**\n * The frame around the selected cells among `cells`, as rectangles to fill in order: a dark band\n * outside each edge not shared with another selected cell, then a white line just inside it.\n * Adjacent selected cells share one frame, so a selected column is one tall box.\n */\nexport function selectionFrame(\n  selectedKeys: Set<string>,\n  cells: Iterable<HeatmapCellId>,\n  geometry: FrameGeometry,\n  bounds: GridBounds\n): SelectionBand[] {\n  const { xScale, cellYScale, binWidth, binHeight, gap } = geometry;\n  const isSelected = (row: number, column: number) => selectedKeys.has(cellKey({ row, column }));\n  const dark: SelectionBand[] = [];\n  const halo: SelectionBand[] = [];\n  const band = (into: SelectionBand[], fill: string, x: number, y: number, width: number, height: number) =>\n    into.push({ x, y, width, height, fill });\n\n  for (const { row, column } of cells) {\n    if (!isSelected(row, column)) continue;\n    // The cell as drawn, with its gap to its right and above it (see getCellGeometry).\n    const cellLeft = xScale(column);\n    const cellRight = cellLeft + binWidth - gap;\n    const cellTop = cellYScale(row) + gap;\n    const cellBottom = cellYScale(row) + binHeight;\n    // The cell, pulled in wherever the line outside it would fall past the grid's edge.\n    const left = cellLeft - FRAME_WIDTH < 0 ? cellLeft + FRAME_WIDTH : cellLeft;\n    const right = cellRight + FRAME_WIDTH > bounds.width ? cellRight - FRAME_WIDTH : cellRight;\n    const top = cellTop - FRAME_WIDTH < 0 ? cellTop + FRAME_WIDTH : cellTop;\n    const bottom = cellBottom + FRAME_WIDTH > bounds.height ? cellBottom - FRAME_WIDTH : cellBottom;\n    // Row 0 is at the bottom of the grid, so the row above is row + 1.\n    const above = isSelected(row + 1, column);\n    const below = isSelected(row - 1, column);\n    const before = isSelected(row, column - 1);\n    const after = isSelected(row, column + 1);\n    // How far an edge's line runs past the box: across the gap to a selected neighbor, or round\n    // the corner where there is none.\n    const reach = (selected: boolean) => (selected ? gap : FRAME_WIDTH);\n    const bridge = (selected: boolean) => (selected ? gap : 0);\n    const across = [left - reach(before), right - left + reach(before) + reach(after)] as const;\n    const down = [top - reach(above), bottom - top + reach(above) + reach(below)] as const;\n    const haloAcross = [left - bridge(before), right - left + bridge(before) + bridge(after)] as const;\n    const haloDown = [top - bridge(above), bottom - top + bridge(above) + bridge(below)] as const;\n\n    if (!above) {\n      band(dark, SELECTION_COLOR, across[0], top - FRAME_WIDTH, across[1], FRAME_WIDTH);\n      band(halo, HALO_COLOR, haloAcross[0], top, haloAcross[1], HALO_WIDTH);\n    }\n    if (!below) {\n      band(dark, SELECTION_COLOR, across[0], bottom, across[1], FRAME_WIDTH);\n      band(halo, HALO_COLOR, haloAcross[0], bottom - HALO_WIDTH, haloAcross[1], HALO_WIDTH);\n    }\n    if (!before) {\n      band(dark, SELECTION_COLOR, left - FRAME_WIDTH, down[0], FRAME_WIDTH, down[1]);\n      band(halo, HALO_COLOR, left, haloDown[0], HALO_WIDTH, haloDown[1]);\n    }\n    if (!after) {\n      band(dark, SELECTION_COLOR, right, down[0], FRAME_WIDTH, down[1]);\n      band(halo, HALO_COLOR, right - HALO_WIDTH, haloDown[0], HALO_WIDTH, haloDown[1]);\n    }\n  }\n  return [...dark, ...halo];\n}\n\n/** The columns and rows the axes and minimap mark as holding the selection. */\nexport type SelectionMarks = { columns: Set<number>; rows: Set<number> };\n\nconst NO_SELECTION_MARKS: SelectionMarks = { columns: new Set(), rows: new Set() };\n\n/**\n * Which columns and rows to mark. A column is marked for a selected cell whose row isn't fully\n * selected, and a row for one whose column isn't: a whole selected column marks only its column,\n * and a single cell marks both.\n */\nexport function selectionMarks(selectedKeys: Set<string> | null, numColumns: number, numRows: number): SelectionMarks {\n  if (!selectedKeys?.size) return NO_SELECTION_MARKS;\n  const cells = [...selectedKeys].map(parseKey);\n  const perColumn = new Map<number, number>();\n  const perRow = new Map<number, number>();\n  for (const { row, column } of cells) {\n    perColumn.set(column, (perColumn.get(column) ?? 0) + 1);\n    perRow.set(row, (perRow.get(row) ?? 0) + 1);\n  }\n  const columns = new Set<number>();\n  const rows = new Set<number>();\n  for (const { row, column } of cells) {\n    if ((perRow.get(row) ?? 0) < numColumns) columns.add(column);\n    if ((perColumn.get(column) ?? 0) < numRows) rows.add(row);\n  }\n  return { columns, rows 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@weng-lab/visualization",
-  "version": "2.6.0-beta.0",
+  "version": "2.6.0",
   "description": "Visualization components for the Weng/Moore Labs suite of genomics web resources",
   "type": "module",
   "module": "dist/visualization.es.js",

package/dist/src/components/Heatmap/HeatmapCell.d.ts

@@ -1,29 +0,0 @@
-import { AnimationType } from '../../utility';
-import { AnyBin } from './HeatmapCells';
-import { PlotTooltipRef } from '../../tooltip';
-/** Class on the <g> wrapping each cell. The hover rule keys off this. */
-export declare const CELL_CLASS = "visx-heatmap-cell";
-/** Class on the <rect>/<circle> inside each cell. */
-export declare const CELL_SHAPE_CLASS = "visx-heatmap-cell-shape";
-/**
- * Hover styling as plain CSS, which costs no render, placed inside the <svg> so downloads keep it.
- * The stroke is already the cell's fill color, and this rule beats the `strokeWidth={0}` attribute
- * without !important. `pointer-events: all` keeps null cells (fill="none") hoverable for their
- * tooltip.
- */
-export declare const heatmapCellStyles = "\n.visx-heatmap-cell { cursor: pointer; }\n.visx-heatmap-cell-shape { transition: stroke-width 0.2s; pointer-events: all; }\n.visx-heatmap-cell:hover .visx-heatmap-cell-shape { stroke-width: 2; }\n";
-export interface HeatmapCellProps {
-    bin: AnyBin;
-    isRect: boolean;
-    binWidth: number;
-    fill: string;
-    fillOpacity: number;
-    colIndex: number;
-    animationType?: AnimationType;
-    /** Stable for the life of the plot, so it never invalidates this cell's memoization. */
-    tooltipRef: PlotTooltipRef<AnyBin>;
-    onClick?: (bin: AnyBin) => void;
-}
-declare const HeatmapCell: import('react').NamedExoticComponent<HeatmapCellProps>;
-export default HeatmapCell;
-//# sourceMappingURL=HeatmapCell.d.ts.map

package/dist/src/components/Heatmap/HeatmapCell.d.ts.map

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package/dist/src/components/Heatmap/HeatmapCells.d.ts

@@ -1,29 +0,0 @@
-import { RectCell, CircleCell } from '@visx/heatmap';
-import { ReactElement } from 'react';
-import { AnimationType } from '../../utility';
-import { ColumnDatum, RowDatum } from './types';
-export type AnyBin = RectCell<ColumnDatum, RowDatum> | CircleCell<ColumnDatum, RowDatum>;
-export interface HeatmapCellsProps {
-    data: ColumnDatum[];
-    xScale: (d: number) => number;
-    yScale: (d: number) => number;
-    colors: [string, string, ...string[]];
-    /**
-     * Value mapped to the first color. Defaults to 0. Pass a negative value (e.g. paired with a
-     * positive maxValue) for a diverging scale centered away from zero.
-     */
-    minValue?: number;
-    maxValue: number;
-    gap: number;
-    isRect: boolean;
-    binWidth: number;
-    binHeight: number;
-    animationType?: AnimationType;
-    tooltipBody?: (bin: AnyBin) => ReactElement;
-    onClick?: (bin: AnyBin) => void;
-    /** See HeatmapProps.highlightRange. */
-    highlightRange?: [number, number] | null;
-}
-declare const HeatmapCells: import('react').NamedExoticComponent<HeatmapCellsProps>;
-export default HeatmapCells;
-//# sourceMappingURL=HeatmapCells.d.ts.map

package/dist/src/components/Heatmap/HeatmapCells.d.ts.map

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package/dist/src/components/Heatmap/HeatmapStaticSvg.d.ts

@@ -1,32 +0,0 @@
-import { ReactElement, ReactNode, RefObject } from 'react';
-import { ColumnDatum, HeatmapLegendFrame } from './types';
-import { AnimationType } from '../../utility';
-import { AnyBin } from './HeatmapCells';
-import { getXAxisTickLabelProps } from './heatmapAxisProps';
-import { HeatmapLayout } from './heatmapLayout';
-export interface HeatmapStaticSvgProps {
-    svgRef: RefObject<SVGSVGElement | null>;
-    layout: HeatmapLayout;
-    parentWidth: number;
-    parentHeight: number;
-    data: ColumnDatum[];
-    gap: number;
-    isRect: boolean;
-    animationType?: AnimationType;
-    tooltipBody?: (bin: AnyBin) => ReactElement;
-    onClick?: (bin: AnyBin) => void;
-    xLabel?: string;
-    yLabel?: string;
-    showLegend: boolean;
-    renderLegend?: (frame: HeatmapLegendFrame) => ReactNode;
-    xAxisTickFormat: (d: number | {
-        valueOf(): number;
-    }) => string;
-    yAxisTickFormat: (d: number | {
-        valueOf(): number;
-    }) => string;
-    xAxisTickLabelProps: ReturnType<typeof getXAxisTickLabelProps>;
-}
-declare const HeatmapStaticSvg: ({ svgRef, layout, parentWidth, parentHeight, data, gap, isRect, animationType, tooltipBody, onClick, xLabel, yLabel, showLegend, renderLegend, xAxisTickFormat, yAxisTickFormat, xAxisTickLabelProps, }: HeatmapStaticSvgProps) => import("react/jsx-runtime").JSX.Element;
-export default HeatmapStaticSvg;
-//# sourceMappingURL=HeatmapStaticSvg.d.ts.map

package/dist/src/components/Heatmap/HeatmapStaticSvg.d.ts.map

@@ -1 +0,0 @@
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package/dist/src/components/Heatmap/scrollable/HeatmapMiniMap.d.ts.map

@@ -1 +0,0 @@
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package/dist/src/components/Heatmap/scrollable/HeatmapMiniMapPopup.d.ts.map

@@ -1 +0,0 @@
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package/dist/src/components/Heatmap/scrollable/HeatmapScrollableGrid.d.ts

@@ -1,29 +0,0 @@
-import { ReactElement, ReactNode, RefObject } from 'react';
-import { ColumnDatum, HeatmapCellId, HeatmapLegendFrame } from '../types';
-import { AnyBin } from '../HeatmapCells';
-import { getXAxisTickLabelProps } from '../heatmapAxisProps';
-import { HeatmapLayout } from '../heatmapLayout';
-export interface HeatmapScrollableGridProps {
-    legendSvgRef: RefObject<SVGSVGElement | null>;
-    layout: HeatmapLayout;
-    data: ColumnDatum[];
-    showMiniMap: boolean;
-    showLegend: boolean;
-    renderLegend?: (frame: HeatmapLegendFrame) => ReactNode;
-    xLabel?: string;
-    yLabel?: string;
-    tooltipBody?: (bin: AnyBin) => ReactElement;
-    onClick?: (bin: AnyBin) => void;
-    selectedCells?: HeatmapCellId[];
-    scrollToSelection?: boolean;
-    xAxisTickFormat: (d: number | {
-        valueOf(): number;
-    }) => string;
-    yAxisTickFormat: (d: number | {
-        valueOf(): number;
-    }) => string;
-    xAxisTickLabelProps: ReturnType<typeof getXAxisTickLabelProps>;
-}
-declare const HeatmapScrollableGrid: ({ legendSvgRef, layout, data, showMiniMap, showLegend, renderLegend, xLabel, yLabel, tooltipBody, onClick, selectedCells, scrollToSelection, xAxisTickFormat, yAxisTickFormat, xAxisTickLabelProps, }: HeatmapScrollableGridProps) => import("react/jsx-runtime").JSX.Element;
-export default HeatmapScrollableGrid;
-//# sourceMappingURL=HeatmapScrollableGrid.d.ts.map

package/dist/src/components/Heatmap/scrollable/HeatmapScrollableGrid.d.ts.map

@@ -1 +0,0 @@
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package/dist/src/components/Heatmap/scrollable/heatmapExport.d.ts

@@ -1,25 +0,0 @@
-import { ColumnDatum } from '../types';
-import { HeatmapLayout } from '../heatmapLayout';
-import { getXAxisTickLabelProps } from '../heatmapAxisProps';
-interface ScrollableExportOptions {
-    layout: HeatmapLayout;
-    data: ColumnDatum[];
-    xLabel?: string;
-    yLabel?: string;
-    showLegend: boolean;
-    legendSvg: SVGSVGElement | null;
-    xAxisTickFormat: (d: number | {
-        valueOf(): number;
-    }) => string;
-    yAxisTickFormat: (d: number | {
-        valueOf(): number;
-    }) => string;
-    xAxisTickLabelProps: ReturnType<typeof getXAxisTickLabelProps>;
-}
-export declare function buildScrollableExportSVG(o: ScrollableExportOptions, { includeCells }?: {
-    includeCells?: boolean;
-}): SVGSVGElement | null;
-export declare function downloadScrollableHeatmapPNG(o: ScrollableExportOptions, fileName: string): void;
-export declare function withOffscreenExportSVG(o: ScrollableExportOptions, run: (svg: SVGSVGElement, onDone: () => void) => void): void;
-export {};
-//# sourceMappingURL=heatmapExport.d.ts.map

package/dist/src/components/Heatmap/scrollable/heatmapExport.d.ts.map

@@ -1 +0,0 @@
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