@weng-lab/visualization 2.4.0-beta.8 → 2.4.1

package/dist/visualization.es203.js

@@ -1,76 +1,6 @@
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-import O from "./visualization.es204.js";
-import P from "./visualization.es205.js";
-import T from "./visualization.es206.js";
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-import A from "./visualization.es208.js";
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-    labelFormat: h
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-        flex: I,
-        margin: S,
-        align: F,
-        ...j
-      })]
-    }, `legend-${t.text}-${i}`))
-  });
-}
+import { createContext as t } from "react";
+const e = t({});
 export {
-  Q as default
+  e as SwitchLayoutGroupContext
 };
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package/dist/visualization.es204.js

@@ -1,26 +1,10 @@
-import { jsx as a } from "react/jsx-runtime";
-function m(e) {
-  let {
-    flexDirection: r = "row",
-    alignItems: t = "center",
-    margin: i = "0",
-    display: l = "flex",
-    children: n,
-    ...s
-  } = e;
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-    className: "visx-legend-item",
-    style: {
-      display: l,
-      alignItems: t,
-      flexDirection: r,
-      margin: i
-    },
-    ...s,
-    children: n
-  });
+const s = (t, n) => Math.abs(t - n);
+function e(t, n) {
+  const a = s(t.x, n.x), c = s(t.y, n.y);
+  return Math.sqrt(a ** 2 + c ** 2);
 }
 export {
-  m as default
+  s as distance,
+  e as distance2D
 };
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package/dist/visualization.es204.js.map

@@ -1 +1 @@
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package/dist/visualization.es205.js

@@ -1,23 +1,19 @@
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   let {
-    flex: l = "1",
-    label: t,
-    margin: n = "5px 0",
-    align: a = "left",
-    children: i,
-    ...r
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-  return /* @__PURE__ */ s("div", {
-    className: "visx-legend-label",
-    style: {
-      justifyContent: a,
-      display: "flex",
-      flex: l,
-      margin: n
-    },
-    ...r,
-    children: i || t
+    node: {
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+      x1: r,
+      y0: e,
+      y1: h
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+    x: t,
+    y: e,
+    width: Math.abs(r - t),
+    height: Math.abs(h - e),
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 }
 export {

package/dist/visualization.es205.js.map

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package/dist/visualization.es206.js

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-import o from "./visualization.es210.js";
-import { jsx as f } from "react/jsx-runtime";
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-    height: a,
-    margin: r,
-    label: i,
-    item: p,
-    itemIndex: s,
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-        ...i
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-      shape: l,
-      item: p,
-      itemIndex: s,
-      label: i,
-      width: t,
-      height: a,
-      fill: d,
-      shapeStyle: m
-    })
-  });
+function s(r, e) {
+  r(e);
 }
 export {
-  S as default
+  s as default
 };
 //# sourceMappingURL=visualization.es206.js.map

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-  return e && typeof e == "object" && "value" in e && typeof e.value < "u" ? e.value : e;
-}
-function n(e) {
-  return String(t(e));
+import T from "./visualization.es504.js";
+import L from "./visualization.es69.js";
+import { required as R } from "./visualization.es505.js";
+import g, { constantZero as p } from "./visualization.es506.js";
+function S() {
+  var f = L, d = !1, o = 1, c = 1, m = [0], h = p, s = p, l = p, y = p, B = p;
+  function t(n) {
+    return n.x0 = n.y0 = 0, n.x1 = o, n.y1 = c, n.eachBefore(I), m = [0], d && n.eachBefore(T), n;
+  }
+  function I(n) {
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+    u < r && (r = u = (r + u) / 2), a < e && (e = a = (e + a) / 2), n.x0 = r, n.y0 = e, n.x1 = u, n.y1 = a, n.children && (i = m[n.depth + 1] = h(n) / 2, r += B(n) - i, e += s(n) - i, u -= l(n) - i, a -= y(n) - i, u < r && (r = u = (r + u) / 2), a < e && (e = a = (e + a) / 2), f(n, r, e, u, a));
+  }
+  return t.round = function(n) {
+    return arguments.length ? (d = !!n, t) : d;
+  }, t.size = function(n) {
+    return arguments.length ? (o = +n[0], c = +n[1], t) : [o, c];
+  }, t.tile = function(n) {
+    return arguments.length ? (f = R(n), t) : f;
+  }, t.padding = function(n) {
+    return arguments.length ? t.paddingInner(n).paddingOuter(n) : t.paddingInner();
+  }, t.paddingInner = function(n) {
+    return arguments.length ? (h = typeof n == "function" ? n : g(+n), t) : h;
+  }, t.paddingOuter = function(n) {
+    return arguments.length ? t.paddingTop(n).paddingRight(n).paddingBottom(n).paddingLeft(n) : t.paddingTop();
+  }, t.paddingTop = function(n) {
+    return arguments.length ? (s = typeof n == "function" ? n : g(+n), t) : s;
+  }, t.paddingRight = function(n) {
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+  }, t.paddingLeft = function(n) {
+    return arguments.length ? (B = typeof n == "function" ? n : g(+n), t) : B;
+  }, t;
 }
 export {
-  t as default,
-  n as valueOrIdentityString
+  S as default
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-    labelFormat: r
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-  return (a, e) => ({
-    datum: a,
-    index: e,
-    text: `${r(a, e)}`,
-    value: l(a)
-  });
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+function p(t, r) {
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+  };
 }
+function Y({ debounce: t, scroll: r, polyfill: o, offsetSize: i } = { debounce: 0, scroll: !1, offsetSize: !1 }) {
+  const a = o || (typeof window > "u" ? class {
+  } : window.ResizeObserver);
+  if (!a) throw new Error("This browser does not support ResizeObserver out of the box. See: https://github.com/react-spring/react-use-measure/#resize-observer-polyfills");
+  const [c, h] = T({ left: 0, top: 0, width: 0, height: 0, bottom: 0, right: 0, x: 0, y: 0 }), e = g({ element: null, scrollContainers: null, resizeObserver: null, lastBounds: c, orientationHandler: null }), d = t ? typeof t == "number" ? t : t.scroll : null, f = t ? typeof t == "number" ? t : t.resize : null, w = g(!1);
+  u(() => (w.current = !0, () => {
+    w.current = !1;
+  }));
+  const [z, m, s] = j(() => {
+    const n = () => {
+      if (!e.current.element) return;
+      const { left: y, top: C, width: H, height: O, bottom: x, right: S, x: B, y: R } = e.current.element.getBoundingClientRect(), l = { left: y, top: C, width: H, height: O, bottom: x, right: S, x: B, y: R };
+      e.current.element instanceof HTMLElement && i && (l.height = e.current.element.offsetHeight, l.width = e.current.element.offsetWidth), Object.freeze(l), w.current && !k(e.current.lastBounds, l) && h(e.current.lastBounds = l);
+    };
+    return [n, f ? p(n, f) : n, d ? p(n, d) : n];
+  }, [h, i, d, f]);
+  function v() {
+    e.current.scrollContainers && (e.current.scrollContainers.forEach((n) => n.removeEventListener("scroll", s, !0)), e.current.scrollContainers = null), e.current.resizeObserver && (e.current.resizeObserver.disconnect(), e.current.resizeObserver = null), e.current.orientationHandler && ("orientation" in screen && "removeEventListener" in screen.orientation ? screen.orientation.removeEventListener("change", e.current.orientationHandler) : "onorientationchange" in window && window.removeEventListener("orientationchange", e.current.orientationHandler));
+  }
+  function b() {
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+      s();
+    }, "orientation" in screen && "addEventListener" in screen.orientation ? screen.orientation.addEventListener("change", e.current.orientationHandler) : "onorientationchange" in window && window.addEventListener("orientationchange", e.current.orientationHandler));
+  }
+  const L = (n) => {
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+  };
+  return W(s, !!r), M(m), u(() => {
+    v(), b();
+  }, [r, s, m]), u(() => v, []), [L, c, z];
+}
+function M(t) {
+  u(() => {
+    const r = t;
+    return window.addEventListener("resize", r), () => {
+      window.removeEventListener("resize", r);
+    };
+  }, [t]);
+}
+function W(t, r) {
+  u(() => {
+    if (r) {
+      const o = t;
+      return window.addEventListener("scroll", o, { capture: !0, passive: !0 }), () => {
+        window.removeEventListener("scroll", o, !0);
+      };
+    }
+  }, [t, r]);
+}
+function E(t) {
+  const r = [];
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+  const { overflow: o, overflowX: i, overflowY: a } = window.getComputedStyle(t);
+  return [o, i, a].some((c) => c === "auto" || c === "scroll") && r.push(t), [...r, ...E(t.parentElement)];
+}
+const X = ["x", "y", "top", "bottom", "left", "right", "width", "height"], k = (t, r) => X.every((o) => t[o] === r[o]);
 export {
-  n as default
+  Y as default
 };
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-    style: {
-      width: i,
-      height: l,
-      background: e,
-      ...r
-    }
-  });
-}
+import { createContext as i } from "react";
+const o = /* @__PURE__ */ i({
+  isFlippedVertically: !1,
+  isFlippedHorizontally: !1
+}), e = o.Provider;
+o.Consumer;
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+  e as TooltipPositionProvider
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package/dist/visualization.es21.js

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-import { PureComponent as e } from "react";
-import t from "react-dom";
-class i extends e {
-  componentWillUnmount() {
-    this.node && document.body && (document.body.removeChild(this.node), delete this.node);
-  }
-  render() {
-    return !this.node && typeof document < "u" && (this.node = document.createElement("div"), this.props.zIndex != null && (this.node.style.zIndex = `${this.props.zIndex}`), document.body.append(this.node)), this.node ? /* @__PURE__ */ t.createPortal(this.props.children, this.node) : null;
-  }
+import g from "./visualization.es95.js";
+const q = (t, n, s) => {
+  const e = document.createElement("g");
+  e.style.position = "absolute", e.style.visibility = "hidden", e.style.fontSize = `${n}px`, e.style.fontFamily = s, e.style.whiteSpace = "nowrap", e.textContent = t, document.body.appendChild(e);
+  const i = e.getBoundingClientRect().width;
+  return document.body.removeChild(e), i;
+}, v = (t, n) => {
+  t.sort((o, c) => o - c);
+  const s = (o) => {
+    const c = Math.floor(o.length / 2);
+    return o.length % 2 !== 0 ? o[c] : (o[c - 1] + o[c]) / 2;
+  }, e = (o) => {
+    const c = Math.floor(o.length / 2), p = o.slice(0, c), M = o.slice(o.length % 2 === 0 ? c : c + 1);
+    return {
+      firstQuartile: s(p),
+      thirdQuartile: s(M)
+    };
+  }, {
+    firstQuartile: i,
+    thirdQuartile: r
+  } = e(t), l = s(t), h = r - i, a = i - 1.5 * h, f = r + 1.5 * h, u = n === "none" ? [] : n === "top" ? t.filter((o) => o > f) : n === "bottom" ? t.filter((o) => o < a) : t.filter((o) => o < a || o > f), m = t[0], d = t[t.length - 1];
+  return {
+    min: m,
+    max: d,
+    firstQuartile: i,
+    thirdQuartile: r,
+    median: l,
+    outliers: u
+  };
+};
+function x(t, n) {
+  return (s) => n.map((e) => ({
+    value: e,
+    count: g(s, (i) => t(e - i)) || 0
+  }));
+}
+function y(t) {
+  const n = 1 / (t * Math.sqrt(2 * Math.PI));
+  return (s) => n * Math.exp(-0.5 * Math.pow(s / t, 2));
+}
+function b(t) {
+  const n = t.length;
+  if (n === 0)
+    return 0;
+  const s = t.reduce((l, h) => l + h, 0) / n, e = t.reduce((l, h) => l + Math.pow(h - s, 2), 0) / t.length;
+  return 3.5 * Math.sqrt(e) / Math.pow(n, 1 / 3);
+}
+function C(t) {
+  const n = t.length;
+  if (n === 0) return 0;
+  const s = t.reduce((u, m) => u + m, 0) / n, e = t.reduce((u, m) => u + Math.pow(m - s, 2), 0) / n, i = Math.sqrt(e), r = t.slice().sort((u, m) => u - m), l = r[Math.floor((n - 1) * 0.25)], a = r[Math.floor((n - 1) * 0.75)] - l, f = 0.9 * Math.min(i, a / 1.34) * Math.pow(n, -1 / 5);
+  return Math.max(f, 1e-10);
+}
+function D(t) {
+  let n = 0;
+  for (let e = 0; e < t.length; e++)
+    n = (n << 5) - n + t.charCodeAt(e), n |= 0;
+  const s = Math.sin(n) * 1e4;
+  return s - Math.floor(s);
 }
 export {
-  i as default
+  v as calculateBoxStats,
+  y as gaussian,
+  q as getTextHeight,
+  x as kernelDensityEstimator,
+  b as scottRule,
+  D as seededRandom,
+  C as silvermanRule
 };
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+{"version":3,"file":"visualization.es21.js","sources":["../src/components/ViolinPlot/helpers.ts"],"sourcesContent":["import { mean } from '@visx/vendor/d3-array';\n\n//measure the height of the longest tick\nexport const getTextHeight = (text: string, fontSize: number, fontFamily: string): number => {\n    const el = document.createElement(\"g\");\n    el.style.position = \"absolute\";\n    el.style.visibility = \"hidden\";\n    el.style.fontSize = `${fontSize}px`;\n    el.style.fontFamily = fontFamily;\n    el.style.whiteSpace = \"nowrap\";\n    el.textContent = text;\n    document.body.appendChild(el);\n    const width = el.getBoundingClientRect().width;\n    document.body.removeChild(el);\n    return width;\n};\n\n// Get the min, max, quartiles, median, and ouotiers for each data set\nexport const calculateBoxStats = (data: number[], outlierType: string) => {\n\n    data.sort((a, b) => a - b);\n\n    const median = (arr: number[]) => {\n        const mid = Math.floor(arr.length / 2);\n        return arr.length % 2 !== 0 ? arr[mid] : (arr[mid - 1] + arr[mid]) / 2;\n    };\n\n    const getQuartiles = (arr: number[]) => {\n        const mid = Math.floor(arr.length / 2);\n        const lower = arr.slice(0, mid);\n        const upper = arr.slice(arr.length % 2 === 0 ? mid : mid + 1);\n        return {\n            firstQuartile: median(lower),\n            thirdQuartile: median(upper),\n        };\n    };\n\n    // Calculate quartiles\n    const { firstQuartile, thirdQuartile } = getQuartiles(data);\n    const med = median(data);\n\n    // Calculate the IQR and whiskers\n    const iqr = thirdQuartile - firstQuartile;\n    const lowerWhisker = firstQuartile - 1.5 * iqr;\n    const upperWhisker = thirdQuartile + 1.5 * iqr;\n\n    // Calculate outliers (values outside of the whiskers)\n    const outliers = outlierType === \"none\"\n        ? []\n        : outlierType === \"top\"\n            ? data.filter(val => val > upperWhisker)\n            : outlierType === \"bottom\"\n                ? data.filter(val => val < lowerWhisker)\n                : data.filter(val => val < lowerWhisker || val > upperWhisker);\n\n    // Min and max\n    const min = data[0];\n    const max = data[data.length - 1];\n\n    return { min, max, firstQuartile, thirdQuartile, median: med, outliers };\n    \n};\n\nexport function kernelDensityEstimator(\n    kernel: (distance: number) => number,\n    X: number[]\n): (data: number[]) => { value: number, count: number }[] {\n    return (data: number[]) => {\n        return X.map((x) => ({\n            value: x,\n            count: mean(data, (v) => kernel(x - v)) || 0,\n        }));\n    };\n}\n\nexport function gaussian(bandwidth: number): (x: number) => number {\n    const normalizationFactor = 1 / (bandwidth * Math.sqrt(2 * Math.PI));\n    return (x) => normalizationFactor * Math.exp(-0.5 * Math.pow(x / bandwidth, 2));\n}\n\nexport function scottRule(data: number[]) {\n    const n = data.length;\n    if (n === 0) {\n      return 0;\n    }\n  \n    const mean = data.reduce((a, b) => a + b, 0) / n;\n    const variance = data.reduce((acc, val) => acc + Math.pow(val - mean, 2), 0) / data.length;\n    const stdDev = Math.sqrt(variance)\n    const binWidth = 3.5 * stdDev / Math.pow(n, 1/3);\n    return binWidth;\n  }\n\n  export function silvermanRule(data: number[]) {\n    const n = data.length;\n    if (n === 0) return 0;\n\n    const mean = data.reduce((a, b) => a + b, 0) / n;\n    const variance = data.reduce((acc, val) => acc + Math.pow(val - mean, 2), 0) / n;\n    const stdDev = Math.sqrt(variance);\n\n    //calc iqr\n    const sortedData = data.slice().sort((a, b) => a - b);\n    const q1 = sortedData[Math.floor((n - 1) * 0.25)];\n    const q3 = sortedData[Math.floor((n - 1) * 0.75)];\n    const iqr = q3 - q1;\n\n    const bandwidth = 0.9 * Math.min(stdDev, iqr / 1.34) * Math.pow(n, -1 / 5);\n    \n    //ensure a positive result even if quartiles coincide\n    return Math.max(bandwidth, 1e-10);\n}\n\n//randomly generate jitter based on seed to keep jitter consisten across page loads\nexport function seededRandom(seed: string): number {\n    let hash = 0;\n    for (let i = 0; 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