@weng-lab/visualization 2.4.0-beta.8 → 2.4.1

package/dist/visualization.es122.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es122.js","sources":["../src/components/ScatterPlot/GradientLegend.tsx"],"sourcesContent":["import React, { useId } from \"react\";\nimport { Group } from \"@visx/group\";\nimport { Text } from \"@visx/text\";\nimport { BackgroundGradient } from \"./types\";\n\ntype GradientLegendProps = {\n    backgroundGradient: BackgroundGradient;\n    boundedHeight: number;\n    barLeft: number;\n    marginTop: number;\n};\n\nconst GradientLegend = ({ backgroundGradient, boundedHeight, barLeft, marginTop }: GradientLegendProps) => {\n    const gradId = `sg-${useId().replace(/:/g, \"\")}`;\n    const [colorLow, colorMid, colorHigh] = backgroundGradient.colorScale ?? 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+{"version":3,"file":"visualization.es122.js","sources":["../src/components/PhyloTree/LeafLinkExtension.tsx"],"sourcesContent":["import { motion } from \"framer-motion\";\nimport { useBranchLengthTransition } from \"./PhyloTree\";\nimport { memo } from \"react\";\nimport { TreeNode } from \"./types\";\n\n\nexport type LeafLinkExtensionProps = {\n  baseLeafLinkExtension: TreeNode[\"baseLeafLinkExtension\"]\n  scaledLeafLinkExtension: TreeNode[\"scaledLeafLinkExtension\"]\n  color: TreeNode[\"color\"];\n  strokeWidth: TreeNode[\"linkStrokeWidth\"]\n  useBranchLengths: boolean\n};\n\nexport const LeafLinkExtension = memo(function LinkExtension({\n  useBranchLengths,\n  color,\n  baseLeafLinkExtension,\n  scaledLeafLinkExtension,\n  strokeWidth\n}: LeafLinkExtensionProps) {\n\n  return (\n    <motion.line\n      strokeWidth={strokeWidth}\n      initial={false}\n      animate={useBranchLengths ? scaledLeafLinkExtension : baseLeafLinkExtension}\n      stroke={color}\n      transition={useBranchLengthTransition}\n    />\n  );\n});\n"],"names":["LeafLinkExtension","memo","useBranchLengths","color","baseLeafLinkExtension","scaledLeafLinkExtension","strokeWidth","jsx","motion","useBranchLengthTransition"],"mappings":";;;;AAcO,MAAMA,IAAoBC,EAAK,SAAuB;AAAA,EAC3DC,kBAAAA;AAAAA,EACAC,OAAAA;AAAAA,EACAC,uBAAAA;AAAAA,EACAC,yBAAAA;AAAAA,EACAC,aAAAA;AACsB,GAAG;AAEzB,SACE,gBAAAC,EAACC,EAAO,MAAP,EACC,aAAAF,GACA,SAAS,IACT,SAASJ,IAAmBG,IAA0BD,GACtD,QAAQD,GACR,YAAYM,GAA0B;AAG5C,CAAC;"}

package/dist/visualization.es123.js

@@ -1,28 +1,29 @@
-import { jsx as l, jsxs as R, Fragment as y } from "react/jsx-runtime";
-import { c as f } from "react/compiler-runtime";
-const c = "#666", d = 1, S = [2, 2], H = (h) => {
-  const t = f(11), {
-    position: x,
-    boundedWidth: e,
-    boundedHeight: o
-  } = h, {
-    x: s,
-    y: n
-  } = x;
+import { jsx as u, jsxs as k } from "react/jsx-runtime";
+import { c as g } from "react/compiler-runtime";
+import { memo as j } from "react";
+import O from "./visualization.es32.js";
+const F = j(function(L) {
+  const t = g(16), {
+    nodeX: N,
+    color: e,
+    baseNodeX: f,
+    baseNodeY: i,
+    label: a,
+    fontSize: n,
+    fontFamily: c,
+    strokeWidth: m
+  } = L, s = N * 180 / Math.PI - 90, d = s > 90 || s < -90, $ = d ? s + 180 : s, p = d ? "end" : "start", x = d ? -6 : 6, b = `rotate(${$}) translate(0, ${(n ?? 2.4) / 3})`, h = a === "Human" ? `${a} ★★★` : a;
+  let o;
+  t[0] !== e || t[1] !== c || t[2] !== n || t[3] !== m || t[4] !== b || t[5] !== h || t[6] !== p || t[7] !== x ? (o = /* @__PURE__ */ u("text", { fontSize: n, fontFamily: c, fill: e, stroke: e, strokeWidth: m, paintOrder: "stroke", transform: b, textAnchor: p, x, children: h }), t[0] = e, t[1] = c, t[2] = n, t[3] = m, t[4] = b, t[5] = h, t[6] = p, t[7] = x, t[8] = o) : o = t[8];
   let r;
-  t[0] !== o || t[1] !== e || t[2] !== n ? (r = n >= 0 && n <= o && /* @__PURE__ */ l("line", { x1: 0, x2: e, y1: n, y2: n, stroke: c, strokeWidth: d, strokeDasharray: S.join(","), pointerEvents: "none" }), t[0] = o, t[1] = e, t[2] = n, t[3] = r) : r = t[3];
-  let i;
-  t[4] !== o || t[5] !== e || t[6] !== s ? (i = s >= 0 && s <= e && /* @__PURE__ */ l("line", { x1: s, x2: s, y1: 0, y2: o, stroke: c, strokeWidth: d, strokeDasharray: S.join(","), pointerEvents: "none" }), t[4] = o, t[5] = e, t[6] = s, t[7] = i) : i = t[7];
-  let a;
-  return t[8] !== r || t[9] !== i ? (a = /* @__PURE__ */ R(y, { children: [
-    r,
-    i
-  ] }), t[8] = r, t[9] = i, t[10] = a) : a = t[10], a;
-};
+  t[9] !== e ? (r = /* @__PURE__ */ u("circle", { r: 1.5, fill: e }), t[9] = e, t[10] = r) : r = t[10];
+  let l;
+  return t[11] !== f || t[12] !== i || t[13] !== o || t[14] !== r ? (l = /* @__PURE__ */ k(O, { top: i, left: f, children: [
+    o,
+    r
+  ] }), t[11] = f, t[12] = i, t[13] = o, t[14] = r, t[15] = l) : l = t[15], l;
+});
 export {
-  S as CROSSHAIR_DASH,
-  c as CROSSHAIR_STROKE,
-  d as CROSSHAIR_STROKE_WIDTH,
-  H as default
+  F as LeafNodeLabel
 };
 //# sourceMappingURL=visualization.es123.js.map

package/dist/visualization.es123.js.map

@@ -1 +1 @@
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+{"version":3,"file":"visualization.es123.js","sources":["../src/components/PhyloTree/LeafNodeLabel.tsx"],"sourcesContent":["import { PhyloTreeProps, TreeNode } from \"./types\";\nimport { Group } from \"@visx/group\";\nimport { memo } from \"react\";\n\n\nexport type LeafNodeLabelProps = {\n  // node.x is the angle the node is at in radial layout while base/scaled are true x/y position in svg\n  nodeX: number;\n  baseNodeX: TreeNode[\"baseNodeX\"];\n  baseNodeY: TreeNode[\"baseNodeY\"];\n  label: TreeNode[\"label\"];\n  color: TreeNode[\"color\"];\n  fontSize: PhyloTreeProps[\"leafFontSize\"];\n  fontFamily: PhyloTreeProps[\"leafFontFamily\"];\n  strokeWidth: TreeNode[\"labelStrokeWidth\"]\n};\n\nexport const LeafNodeLabel = memo(function LeafNodeLabel({\n  nodeX,\n  color,\n  baseNodeX,\n  baseNodeY,\n  label,\n  fontSize,\n  fontFamily,\n  strokeWidth\n}: LeafNodeLabelProps) {\n  const angleDeg = (nodeX * 180) / Math.PI - 90;\n  const flip = angleDeg > 90 || angleDeg < -90;\n  const rotation = flip ? angleDeg + 180 : angleDeg;\n  const textAnchor: \"start\" | \"end\" = flip ? \"end\" : \"start\";\n  const xOffset = flip ? -6 : 6;\n\n  return (\n    <Group\n      top={baseNodeY}\n      left={baseNodeX}\n    >\n      <text\n        fontSize={fontSize}\n        fontFamily={fontFamily}\n        fill={color}\n        stroke={color}\n        strokeWidth={strokeWidth}\n        paintOrder=\"stroke\"\n        transform={`rotate(${rotation}) translate(0, ${(fontSize ?? 2.4) / 3})`}\n        textAnchor={textAnchor}\n        x={xOffset}\n      >\n        {label === \"Human\" ? `${label} \\u2605\\u2605\\u2605` : label}\n      </text>\n      <circle\n        r={1.5}\n        fill={color}\n      />\n    </Group>\n  );\n});\n"],"names":["LeafNodeLabel","memo","t0","$","_c","nodeX","color","baseNodeX","baseNodeY","label","fontSize","fontFamily","strokeWidth","angleDeg","Math","PI","flip","rotation","textAnchor","xOffset","t1","t2","t3","t4","jsx","t5","jsxs","Group"],"mappings":";;;;AAiBO,MAAMA,IAAgBC,EAAK,SAAAC,GAAA;AAAA,QAAAC,IAAAC,EAAA,EAAA,GAAuB;AAAA,IAAAC,OAAAA;AAAAA,IAAAC,OAAAA;AAAAA,IAAAC,WAAAA;AAAAA,IAAAC,WAAAA;AAAAA,IAAAC,OAAAA;AAAAA,IAAAC,UAAAA;AAAAA,IAAAC,YAAAA;AAAAA,IAAAC,aAAAA;AAAAA,EAAAA,IAAAV,GAUvDW,IAAkBR,IAAQ,MAAOS,KAAIC,KAAM,IAC3CC,IAAaH,IAAW,MAAMA,IAAW,KACzCI,IAAiBD,IAAOH,IAAW,MAAlBA,GACjBK,IAAoCF,IAAA,QAAA,SACpCG,IAAgBH,IAAA,KAAA,GAcCI,IAAA,UAAUH,CAAQ,mBAAmBP,KAAA,OAAmB,CAAC,KAInEW,IAAAZ,MAAU,UAAV,GAAuBA,CAAK,SAA5BA;AAAyD,MAAAa;AAAA,EAAAnB,EAAA,CAAA,MAAAG,KAAAH,EAAA,CAAA,MAAAQ,KAAAR,EAAA,CAAA,MAAAO,KAAAP,EAAA,CAAA,MAAAS,KAAAT,EAAA,CAAA,MAAAiB,KAAAjB,EAAA,CAAA,MAAAkB,KAAAlB,EAAA,CAAA,MAAAe,KAAAf,SAAAgB,KAX5DG,sBAAA,QAAA,EACYZ,UAAAA,GACEC,YAAAA,GACNL,MAAAA,GACEA,QAAAA,GACKM,aAAAA,GACF,YAAA,UACA,WAAAQ,GACCF,YAAAA,GACTC,GAEFE,UAAAA,GACH,GAAOlB,OAAAG,GAAAH,OAAAQ,GAAAR,OAAAO,GAAAP,OAAAS,GAAAT,OAAAiB,GAAAjB,OAAAkB,GAAAlB,OAAAe,GAAAf,OAAAgB,GAAAhB,OAAAmB,KAAAA,IAAAnB,EAAA,CAAA;AAAA,MAAAoB;AAAA,EAAApB,SAAAG,KACPiB,IAAA,gBAAAC,EAAA,UAAA,EACK,GAAA,KACGlB,MAAAA,GAAK,GACXH,OAAAG,GAAAH,QAAAoB,KAAAA,IAAApB,EAAA,EAAA;AAAA,MAAAsB;AAAA,SAAAtB,EAAA,EAAA,MAAAI,KAAAJ,EAAA,EAAA,MAAAK,KAAAL,EAAA,EAAA,MAAAmB,KAAAnB,UAAAoB,KApBJE,IAAA,gBAAAC,EAACC,GAAA,EACMnB,KAAAA,GACCD,SAENe,UAAAA;AAAAA,IAAAA;AAAAA,IAaAC;AAAAA,EAAAA,GAIF,GAAQpB,QAAAI,GAAAJ,QAAAK,GAAAL,QAAAmB,GAAAnB,QAAAoB,GAAApB,QAAAsB,KAAAA,IAAAtB,EAAA,EAAA,GArBRsB;AAqBQ,CAEX;"}

package/dist/visualization.es124.js

@@ -1,88 +1,35 @@
-import { c as q } from "react/compiler-runtime";
-import { useState as w } from "react";
-import { rescaleX as A, rescaleY as B, isPointInLasso as F } from "./visualization.es17.js";
-import G from "./visualization.es245.js";
-const Q = (k) => {
-  const t = q(27), {
-    pointData: S,
-    margin: s,
-    xScale: v,
-    yScale: g,
-    onSelectionChange: M
+import { jsx as u } from "react/jsx-runtime";
+import { c as S } from "react/compiler-runtime";
+import { getAnimationProps as T } from "./visualization.es20.js";
+import { getTrianglePoints as A } from "./visualization.es17.js";
+import { motion as W } from "./visualization.es27.js";
+const G = (k) => {
+  const o = S(19), {
+    pointData: g,
+    animation: e,
+    animationGroupSize: a,
+    animationBuffer: i,
+    xScaleTransformed: n,
+    yScaleTransformed: s,
+    boundedWidth: c,
+    boundedHeight: l
   } = k;
-  let r;
-  t[0] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (r = [], t[0] = r) : r = t[0];
-  const [n, c] = w(r);
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-      y: l - s.top
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-  }, t[7] = n, t[8] = M, t[9] = S, t[10] = v, t[11] = g, t[12] = x) : x = t[12];
-  const h = x;
+  let t;
+  if (o[0] !== e || o[1] !== i || o[2] !== a || o[3] !== l || o[4] !== c || o[5] !== g || o[6] !== n || o[7] !== s) {
+    let f;
+    o[9] !== e || o[10] !== i || o[11] !== a || o[12] !== l || o[13] !== c || o[14] !== n || o[15] !== s ? (f = (r, y) => {
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+      if (p < 0 || p > c || d < 0 || d > l)
+        return null;
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+    }, o[9] = e, o[10] = i, o[11] = a, o[12] = l, o[13] = c, o[14] = n, o[15] = s, o[16] = f) : f = o[16], t = g.map(f), o[0] = e, o[1] = i, o[2] = a, o[3] = l, o[4] = c, o[5] = g, o[6] = n, o[7] = s, o[8] = t;
+  } else
+    t = o[8];
   let m;
-  t[13] !== Y || t[14] !== X ? (m = {
-    onDragStart: X,
-    onDragMove: Y,
-    resetOnStart: !0
-  }, t[13] = Y, t[14] = X, t[15] = m) : m = t[15];
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-    y: O,
-    dx: L,
-    dy: u,
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-    dragStart: j,
-    dragEnd: P,
-    dragMove: T
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-    isDragging: I,
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-    y: C,
-    dx: L,
-    dy: u,
-    dragStart: j,
-    dragMove: T,
-    dragEnd: P,
-    completeSelection: h
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+  return o[17] !== t ? (m = /* @__PURE__ */ u("g", { children: t }), o[17] = t, o[18] = m) : m = o[18], m;
 };
 export {
-  Q as useDragSelection
+  G as default
 };
 //# sourceMappingURL=visualization.es124.js.map

package/dist/visualization.es124.js.map

@@ -1 +1 @@
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});\n\n    return { lines, isDragging, x, y, dx, dy, dragStart, dragMove, dragEnd, completeSelection 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package/dist/visualization.es125.js

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-import { line as u } from "./visualization.es87.js";
-import { jsx as t, Fragment as h } from "react/jsx-runtime";
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-    className: s,
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+import { jsxs as E, jsx as b } from "react/jsx-runtime";
+import { c as $ } from "react/compiler-runtime";
+import v from "./visualization.es32.js";
+const H = (u) => {
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+    xScaleTransformed: a,
+    yScaleTransformed: f,
+    boundedWidth: n,
+    boundedHeight: l,
+    margin: o
+  } = u;
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+    return null;
+  const T = o.top, j = o.left;
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+    let m;
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+      if (!r.label)
+        return null;
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+      const W = c + e * 15, A = e >= 0 ? W + 4 + p : W - 4 - p;
+      (A > n || A < 0) && (e = -e);
+      const M = i + d * 15;
+      (M < 0 || M > l) && (d = -d);
+      const R = c + e * 15, S = i + d * 15, w = e >= 0 ? "start" : "end";
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