@weng-lab/visualization 2.4.0-beta.7 → 2.4.0-beta.8

package/dist/visualization.es28.js

@@ -1,116 +1,47 @@
-import { jsxs as S, jsx as p, Fragment as oe } from "react/jsx-runtime";
-import ce, { useMemo as z, useCallback as ne } from "react";
-import se from "./visualization.es102.js";
-import { calculateBoxStats as re, scottRule as me, silvermanRule as he, kernelDensityEstimator as pe, seededRandom as ue, gaussian as fe } from "./visualization.es27.js";
-import de from "./visualization.es103.js";
-import ie from "./visualization.es46.js";
-import ve from "./visualization.es88.js";
-import ye from "./visualization.es31.js";
-import ke from "./visualization.es104.js";
-import { line as ge } from "./visualization.es89.js";
-import xe from "./visualization.es81.js";
-import $e from "./visualization.es90.js";
-const Re = ({
-  distribution: t,
-  distIndex: $,
-  violinProps: l,
-  crossProps: D,
-  valueScale: m,
-  labelScale: C,
-  offset: Q,
-  labels: R,
-  disableCrossPlot: P,
-  disableViolinPlot: H,
-  horizontal: o,
-  pointTooltipBody: k,
-  onViolinClicked: b,
-  onPointClicked: A
-}) => {
-  const {
-    tooltipData: a,
-    tooltipLeft: X,
-    tooltipTop: N,
-    tooltipOpen: V,
-    showTooltip: Y,
-    hideTooltip: _
-  } = ie(), u = t.data.flatMap((e) => e.value), {
-    min: w,
-    max: T,
-    firstQuartile: F,
-    thirdQuartile: j,
-    median: E,
-    outliers: q
-  } = re(u, D?.outliers ?? "all"), ee = t.data.filter((e) => q.includes(e.value)).map((e) => ({
-    ...e,
-    outlier: !0
-  })), te = t.data.filter((e) => !q.includes(e.value)), G = z(() => {
-    const e = (T - w) / Math.max(100, u.length), s = ve(w, T, e), r = typeof l?.bandwidth == "number" ? l.bandwidth : typeof l?.bandwidth == "function" ? l.bandwidth(u) : l?.bandwidth === "scott" ? me(u) : he(u);
-    return [...pe(fe(r), s)(u)].sort((d, c) => d.value - c.value);
-  }, [u, T, w, l]), W = Math.min(C.bandwidth(), 50), ae = D?.medianWidth ?? W * 0.25, L = z(() => ({
-    label: t.label,
-    sampleSize: t.data.length,
-    median: E.toFixed(2),
-    firstQuartile: F.toFixed(2),
-    thirdQuartile: j.toFixed(2)
-  }), [t.label, t.data.length, E, F, j]), M = ne((e, s, r) => {
-    Y({
-      tooltipData: r && k ? {
-        point: r
-      } : s,
-      tooltipLeft: e.pageX,
-      tooltipTop: e.pageY
-    });
-  }, [k, Y]), J = () => {
-    !b || !a || a && b(t);
-  }, O = (e) => {
-    !A || !a || a && A(e);
-  }, n = o ? (C(R[$]) ?? 0) + W / 2 : (C(R[$]) ?? 0) + Q + C.bandwidth() / 2, K = ye().domain([0, ke(G, (e) => Math.abs(e.count)) || 1]).range([0, W / 2]), U = G.filter((e) => e && e.count != null && e.value != null);
-  let g = [...U.map((e) => ({
-    x: n + K(e.count),
-    y: m(e.value)
-  })), ...U.slice().reverse().map((e) => ({
-    x: n - K(e.count),
-    y: m(e.value)
-  }))];
-  if (g.length > 2) {
-    const e = g.slice(1);
-    e.push(g[0]), e.push(g[1]), g = e;
-  }
-  const Z = ge().x((e) => o ? e.y : e.x).y((e) => o ? e.x : e.y).curve($e)(g) ?? null;
-  return /* @__PURE__ */ S(ce.Fragment, {
-    //display plots if enough data provided
-    children: [
-      /* @__PURE__ */ S("g", { onMouseLeave: _, transform: o ? `translate(${Q}, 0)` : "translate(0, 0)", children: [
-        t.data.length >= (l?.pointDisplayThreshold ?? 3) && !H && Z && /* @__PURE__ */ p(oe, { children: /* @__PURE__ */ p("path", { d: Z, fill: t.violinColor ?? "none", fillOpacity: t.opacity ?? 0.3, stroke: t.violinColor ?? "black", strokeOpacity: t.opacity ?? 1, strokeWidth: a === L ? (l?.stroke ?? 1) + 1 : l?.stroke ?? 1, pointerEvents: "all", onMouseMove: (e) => M(e, L), onClick: J }) }),
-        t.data.length >= (l?.pointDisplayThreshold ?? 3) && !P && /* @__PURE__ */ p(se, { crossProps: D, left: o ? 0 : n, top: o ? n : 0, median: E, firstQuartile: F, thirdQuartile: j, valueScale: m, medianWidth: ae, tooltipData: a ?? {}, handleMouseMove: M, handleCrossClick: J, disableViolinPlot: H, tooltip: L, horizontal: o }),
-        ee.map((e, s) => {
-          const r = m(e.value), x = m(e.value), f = o ? x : n, d = o ? n : r, c = {
-            outlier: !0,
-            label: t.label,
-            value: e.value.toFixed(2)
-          }, h = k ? a?.point === e : a?.label === c.label && a?.value === c.value, i = e.radius ?? 4;
-          return /* @__PURE__ */ p("circle", { cx: f, cy: d, r: h ? i + 1 : i, stroke: h ? "#000000" : e.stroke ?? "none", fill: e.color ?? t.violinColor ?? "#000000", opacity: e.opacity ?? t.opacity ?? 1, pointerEvents: "all", onMouseMove: (v) => M(v, c, e), onClick: () => O(e) }, `outlier-${s}`);
-        }),
-        t.data.length >= (l?.pointDisplayThreshold ?? 3) && l?.showAllPoints && te.map((e, s) => {
-          const r = m(e.value), x = m(e.value), f = l?.jitter ?? 0, d = `${t.label}-${e}-${s}`, c = f > 0 ? (ue(d) - 0.5) * 2 * f : 0, h = o ? x : n + c, i = o ? n + c : r, v = {
-            label: t.label,
-            value: e.value.toFixed(2)
-          }, B = k ? a?.point === e : a?.label === v.label && a?.value === v.value, I = e.radius ?? 2, y = B ? I + 1 : I;
-          return /* @__PURE__ */ p("path", { d: `M ${h},${i} m -${y},0 a ${y},${y} 0 1,0 ${2 * y},0 a ${y},${y} 0 1,0 -${2 * y},0`, stroke: B ? "black" : e.stroke ?? "none", fill: e.color ?? t.violinColor ?? "black", opacity: e.opacity ?? t.opacity ?? 1, pointerEvents: "all", onMouseMove: (le) => M(le, v, e), onClick: () => O(e) }, `${$}-point-${s}`);
-        }),
-        t.data.length < (l?.pointDisplayThreshold ?? 3) && t.data.map((e, s) => {
-          const r = m(e.value), x = m(e.value), f = o ? x : n, d = o ? n : r, c = e.radius ?? 2, h = {
-            label: t.label,
-            value: e.value.toFixed(2)
-          }, i = k ? a?.point === e : a?.label === h.label && a?.value === h.value;
-          return /* @__PURE__ */ p("circle", { cx: f, cy: d, r: i ? c + 1 : c, stroke: i ? "black" : e.stroke ?? "none", fill: e.color ?? t.violinColor ?? "black", opacity: e.opacity ?? t.opacity ?? 1, pointerEvents: "all", onMouseMove: (v) => M(v, h, e), onClick: () => O(e) }, `thresh-${s}`);
-        })
-      ] }, `group-${$}`),
-      V && a && /* @__PURE__ */ p(xe, { children: /* @__PURE__ */ p(de, { left: X ?? 0, top: N ?? 0, data: a, open: V, pointTooltipBody: k }, `${X}-${N}`) })
-    ]
-  }, `frag-${$}`);
-};
+import { forwardRef as m } from "react";
+import u from "./visualization.es133.js";
+import { jsx as c } from "react/jsx-runtime";
+const x = {
+  position: "absolute",
+  backgroundColor: "white",
+  color: "#666666",
+  padding: "0.3rem 0.5rem",
+  borderRadius: "3px",
+  fontSize: "14px",
+  boxShadow: "0 1px 2px rgba(33,33,33,0.2)",
+  lineHeight: "1em",
+  pointerEvents: "none"
+}, y = /* @__PURE__ */ m((s, r) => {
+  let {
+    className: i,
+    top: o,
+    left: e,
+    offsetLeft: t = 10,
+    offsetTop: l = 10,
+    style: p = x,
+    children: n,
+    unstyled: a = !1,
+    applyPositionStyle: f = !1,
+    ...d
+  } = s;
+  return /* @__PURE__ */ c("div", {
+    ref: r,
+    className: u("visx-tooltip", i),
+    style: {
+      top: o == null || l == null ? o : o + l,
+      left: e == null || t == null ? e : e + t,
+      ...f && {
+        position: "absolute"
+      },
+      ...!a && p
+    },
+    ...d,
+    children: n
+  });
+});
+y.displayName = "Tooltip";
 export {
-  Re as default
+  y as default,
+  x as defaultStyles
 };
 //# sourceMappingURL=visualization.es28.js.map

package/dist/visualization.es28.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es28.js","sources":["../src/components/ViolinPlot/singleViolin.tsx"],"sourcesContent":["import { scaleLinear } from '@visx/scale';\nimport { max as d3max } from '@visx/vendor/d3-array';\nimport { curveBasis } from '@visx/curve';\nimport { line } from '@visx/shape';\nimport { range } from '@visx/vendor/d3-array';\nimport React, { useCallback, useMemo } from \"react\";\nimport CrossPlot from \"./crossPlot\";\nimport { calculateBoxStats, scottRule, silvermanRule, kernelDensityEstimator, gaussian, seededRandom } from \"./helpers\";\nimport { ViolinPoint, SingleViolinProps, TooltipData } from \"./types\";\nimport ViolinTooltip from \"./violinTooltip\";\nimport { Portal, useTooltip } from \"@visx/tooltip\";\n\nconst SingleViolin = <T,>({\n    distribution,\n    distIndex,\n    violinProps,\n    crossProps,\n    valueScale,\n    labelScale,\n    offset,\n    labels,\n    disableCrossPlot,\n    disableViolinPlot,\n    horizontal,\n    pointTooltipBody,\n    onViolinClicked,\n    onPointClicked\n}: SingleViolinProps<T>) => {\n\n    const {\n        tooltipData,\n        tooltipLeft,\n        tooltipTop,\n        tooltipOpen,\n        showTooltip,\n        hideTooltip,\n    } = useTooltip<TooltipData<T>>();\n\n    const data = distribution.data.flatMap(d => d.value)\n\n    //get all the stats for the box plot\n    const { min, max, firstQuartile, thirdQuartile, median, outliers } = calculateBoxStats(data, crossProps?.outliers ?? \"all\");\n\n    const outlierPoints: ViolinPoint<T>[] = distribution.data\n        .filter(d => outliers.includes(d.value))\n        .map(d => ({\n            ...d,\n            outlier: true\n        }));\n    const pointsNoOutliers: ViolinPoint<T>[] = distribution.data.filter(d => !outliers.includes(d.value))\n\n    const violinData = useMemo(() => {\n        const step = (max - min) / Math.max(100, data.length);\n        const ticks = range(min, max, step);\n\n        //bandwidth / binwidth for smoothing, based on user input\n        const bandwidth = typeof violinProps?.bandwidth === \"number\"\n            ? violinProps.bandwidth\n            : typeof violinProps?.bandwidth === \"function\"\n                ? violinProps.bandwidth(data)\n                : violinProps?.bandwidth === \"scott\"\n                    ? scottRule(data)\n                    : silvermanRule(data);\n\n        const kde = kernelDensityEstimator(gaussian(bandwidth), ticks);\n\n        const densityData = kde(data);\n\n        return [...densityData].sort((a, b) => a.value - b.value)\n    }, [data, max, min, violinProps])\n\n    const violinWidth = Math.min(labelScale.bandwidth(), 50);\n    const boxWidth = crossProps?.medianWidth ?? violinWidth * .25;\n\n    const violinTooltip: TooltipData<T> = useMemo(() => ({\n        label: distribution.label,\n        sampleSize: distribution.data.length,\n        median: median.toFixed(2),\n        firstQuartile: firstQuartile.toFixed(2),\n        thirdQuartile: thirdQuartile.toFixed(2)\n    }), [distribution.label, distribution.data.length, median, firstQuartile, thirdQuartile]);\n\n    const handleMouseMove = useCallback((event: React.MouseEvent<SVGPathElement>, data: TooltipData<T>, point?: ViolinPoint<T>) => {\n        showTooltip({\n            tooltipData: point && pointTooltipBody ? { point: point } : data,\n            tooltipLeft: event.pageX,\n            tooltipTop: event.pageY,\n        });\n    }, [pointTooltipBody, showTooltip]);\n\n    const handleViolinClick = () => {\n        if (!onViolinClicked || !tooltipData) return;\n\n        if (tooltipData) {\n            onViolinClicked(distribution);\n        }\n    };\n\n    const handlePointClick = (point: ViolinPoint<T>) => {\n        if (!onPointClicked || !tooltipData) return;\n\n        if (tooltipData) {\n            onPointClicked(point);\n        }\n    };\n\n    //center of each Violin\n    const violinCenter = horizontal ? (labelScale(labels[distIndex]) ?? 0) + violinWidth / 2 : (labelScale(labels[distIndex]) ?? 0) + offset + labelScale.bandwidth() / 2;\n    const widthScale = scaleLinear()\n        .domain([0, d3max(violinData, d => Math.abs(d.count)) || 1])\n        .range([0, violinWidth / 2]);\n\n    //filter out nan values if any\n    const filteredData = violinData.filter(d => d && d.count != null && d.value != null);\n\n    //mirror the data so that both sides are drawn\n    let points = [\n        ...filteredData.map(d => ({\n            x: violinCenter + (widthScale(d.count) as number),\n            y: valueScale(d.value),\n        })),\n        ...filteredData.slice().reverse().map(d => ({\n            x: violinCenter - (widthScale(d.count) as number),\n            y: valueScale(d.value),\n        }))\n    ];\n\n    // close the path at the second point instead of the first since points 0,1 are closer together\n    if (points.length > 2) {\n        const modifiedPoints = points.slice(1);\n        modifiedPoints.push(points[0]);\n        modifiedPoints.push(points[1]);\n        points = modifiedPoints;\n    }\n\n    const violinPath = line<{ x: number; y: number }>()\n        .x(d => horizontal ? d.y : d.x)\n        .y(d => horizontal ? d.x : d.y)\n        .curve(curveBasis)(points) ?? null;\n\n    return (\n        <React.Fragment key={`frag-${distIndex}`}>\n            {\n                //display plots if enough data provided\n                <g\n                    key={`group-${distIndex}`}\n                    onMouseLeave={hideTooltip}\n                    transform={horizontal ? `translate(${offset}, 0)` : `translate(0, 0)`}\n                >\n                    {distribution.data.length >= (violinProps?.pointDisplayThreshold ?? 3) && !disableViolinPlot && violinPath && (\n                        <>\n                            <path\n                                d={violinPath}\n                                fill={distribution.violinColor ?? 'none'}\n                                fillOpacity={distribution.opacity ?? 0.3}\n                                stroke={distribution.violinColor ?? 'black'}\n                                strokeOpacity={distribution.opacity ?? 1}\n                                strokeWidth={\n                                    tooltipData === violinTooltip\n                                        ? (violinProps?.stroke ?? 1) + 1\n                                        : violinProps?.stroke ?? 1\n                                }\n                                pointerEvents=\"all\"\n                                onMouseMove={(e) => handleMouseMove(e, violinTooltip)}\n                                onClick={handleViolinClick}\n                            />\n                        </>\n                    )\n                    }\n                    {distribution.data.length >= (violinProps?.pointDisplayThreshold ?? 3) && !disableCrossPlot &&\n                        <CrossPlot\n                            crossProps={crossProps}\n                            left={horizontal ? 0 : violinCenter}\n                            top={horizontal ? violinCenter : 0}\n                            median={median}\n                            firstQuartile={firstQuartile}\n                            thirdQuartile={thirdQuartile}\n                            valueScale={valueScale}\n                            medianWidth={boxWidth}\n                            tooltipData={tooltipData ?? {}}\n                            handleMouseMove={handleMouseMove}\n                            handleCrossClick={handleViolinClick}\n                            disableViolinPlot={disableViolinPlot}\n                            tooltip={violinTooltip}\n                            horizontal={horizontal}\n                        />\n                    }\n                    {/* Outliers */}\n                    {outlierPoints.map((outlier, index) => {\n                        const vertcy = valueScale(outlier.value);\n                        const horizoncx = valueScale(outlier.value)\n                        const cx = horizontal ? horizoncx : violinCenter\n                        const cy = horizontal ? violinCenter : vertcy\n\n                        const pointTooltip = {\n                            outlier: true,\n                            label: distribution.label,\n                            value: outlier.value.toFixed(2),\n                        };\n\n                        const isHighlighted = pointTooltipBody\n                            ? tooltipData?.point === outlier :\n                            tooltipData?.label === pointTooltip.label &&\n                            tooltipData?.value === pointTooltip.value;\n\n                        const radius = outlier.radius ?? 4\n\n                        return (\n                            <circle\n                                key={`outlier-${index}`}\n                                cx={cx}\n                                cy={cy}\n                                r={isHighlighted ? radius + 1 : radius}\n                                stroke={isHighlighted ? \"#000000\" : (outlier.stroke ?? \"none\")}\n                                fill={outlier.color ?? distribution.violinColor ?? \"#000000\"}\n                                opacity={outlier.opacity ?? distribution.opacity ?? 1}\n                                pointerEvents=\"all\"\n                                onMouseMove={(e) => handleMouseMove(e, pointTooltip, outlier)}\n                                onClick={() => handlePointClick(outlier)}\n                            />\n                        )\n                    })}\n                    {/* show all poionts for each distribution */}\n                    {distribution.data.length >= (violinProps?.pointDisplayThreshold ?? 3) && violinProps?.showAllPoints &&\n                        pointsNoOutliers.map((point: ViolinPoint<T>, index: number) => {\n\n                            const vertcy = valueScale(point.value);\n                            const horizoncx = valueScale(point.value)\n\n                            const jitterAmount = violinProps?.jitter ?? 0;\n                            const seed = `${distribution.label}-${point}-${index}`;\n                            const jitterX = jitterAmount > 0\n                                ? (seededRandom(seed) - 0.5) * 2 * jitterAmount\n                                : 0;\n\n                            const cx = horizontal ? horizoncx : violinCenter + jitterX;\n                            const cy = horizontal ? violinCenter + jitterX : vertcy\n\n                            const pointTooltip = {\n                                label: distribution.label,\n                                value: point.value.toFixed(2),\n                            };\n\n                            const isHighlighted = pointTooltipBody\n                                ? tooltipData?.point === point :\n                                tooltipData?.label === pointTooltip.label &&\n                                tooltipData?.value === pointTooltip.value;\n\n                            const r = point.radius ?? 2\n                            const radius = isHighlighted ? r + 1 : r;\n\n                            return (\n                                <path\n                                    key={`${distIndex}-point-${index}`}\n                                    d={`M ${cx},${cy} m -${radius},0 a ${radius},${radius} 0 1,0 ${2 * radius},0 a ${radius},${radius} 0 1,0 -${2 * radius},0`}\n                                    stroke={isHighlighted ? \"black\" : (point.stroke ?? \"none\")}\n                                    fill={point.color ?? distribution.violinColor ?? \"black\"}\n                                    opacity={point.opacity ?? distribution.opacity ?? 1}\n                                    pointerEvents=\"all\"\n                                    onMouseMove={(e) => handleMouseMove(e, pointTooltip, point)}\n                                    onClick={() => handlePointClick(point)}\n                                />\n                            );\n                        })\n                    }\n                    {/* display points if data points are less than threshold (3) */}\n                    {distribution.data.length < (violinProps?.pointDisplayThreshold ?? 3) &&\n                        distribution.data.map((point: ViolinPoint<T>, index: number) => {\n                            const vertcy = valueScale(point.value);\n                            const horizoncx = valueScale(point.value)\n                            const cx = horizontal ? horizoncx : violinCenter\n                            const cy = horizontal ? violinCenter : vertcy\n                            const radius = point.radius ?? 2;\n\n                            const pointTooltip = {\n                                label: distribution.label,\n                                value: point.value.toFixed(2),\n                            };\n\n                            const isHighlighted = pointTooltipBody\n                                ? tooltipData?.point === point :\n                                tooltipData?.label === pointTooltip.label &&\n                                tooltipData?.value === pointTooltip.value;\n\n                            return (\n                                <circle\n                                    key={`thresh-${index}`}\n                                    cx={cx}\n                                    cy={cy}\n                                    r={isHighlighted ? radius + 1 : radius}\n                                    stroke={isHighlighted ? \"black\" : (point.stroke ?? \"none\")}\n                                    fill={point.color ?? distribution.violinColor ?? \"black\"}\n                                    opacity={point.opacity ?? distribution.opacity ?? 1}\n                                    pointerEvents=\"all\"\n                                    onMouseMove={(e) => handleMouseMove(e, pointTooltip, point)}\n                                    onClick={() => handlePointClick(point)}\n                                />\n                            );\n                        })}\n\n                </g>\n            }\n            {tooltipOpen && tooltipData && (\n                <Portal>\n                    <ViolinTooltip\n                        left={tooltipLeft ?? 0}\n                        top={tooltipTop ?? 0}\n                        data={tooltipData}\n                        open={tooltipOpen}\n                        key={`${tooltipLeft}-${tooltipTop}`}\n                        pointTooltipBody={pointTooltipBody}\n                    />\n                </Portal>\n            )}\n        </React.Fragment>\n    )\n}\n\nexport default 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package/dist/visualization.es280.js

@@ -1,16 +1,7 @@
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-var l, s;
-function h() {
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-  s = 1;
-  var o = v();
-  return o.prototype.formulaEval = function() {
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-    return e[0].value;
-  }, l = o, l;
+function u(t) {
+  t.x0 = Math.round(t.x0), t.y0 = Math.round(t.y0), t.x1 = Math.round(t.x1), t.y1 = Math.round(t.y1);
 }
 export {
-  h as __require
+  u as default
 };
 //# sourceMappingURL=visualization.es280.js.map

package/dist/visualization.es280.js.map

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package/dist/visualization.es281.js

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-import { createContext as t } from "react";
-const o = t({ strict: !1 });
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+  if (typeof r != "function") throw new Error();
+  return r;
+}
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-  o as LazyContext
+  e as required
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package/dist/visualization.es282.js

@@ -1,15 +1,13 @@
-import { getInitializedFeatureDefinitions as o } from "./visualization.es283.js";
-import { setFeatureDefinitions as n } from "./visualization.es284.js";
-function s(e) {
-  const i = o();
-  for (const t in e)
-    i[t] = {
-      ...i[t],
-      ...e[t]
-    };
-  n(i);
+function t() {
+  return 0;
+}
+function r(n) {
+  return function() {
+    return n;
+  };
 }
 export {
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+  r as default
 };
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package/dist/visualization.es283.js

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-    "whileHover",
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-    "whileFocus",
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-  exit: ["exit"],
-  drag: ["drag", "dragControls"],
-  focus: ["whileFocus"],
-  hover: ["whileHover", "onHoverStart", "onHoverEnd"],
-  tap: ["whileTap", "onTap", "onTapStart", "onTapCancel"],
-  pan: ["onPan", "onPanStart", "onPanSessionStart", "onPanEnd"],
-  inView: ["whileInView", "onViewportEnter", "onViewportLeave"],
-  layout: ["layout", "layoutId"]
-};
-let t = !1;
-function l() {
-  if (t)
-    return;
-  const e = {};
-  for (const i in n)
-    e[i] = {
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-    };
-  s(e), t = !0;
-}
-function w() {
-  return l(), r();
-}
+import { createContext as t } from "react";
+const o = t({ strict: !1 });
 export {
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-  l as initFeatureDefinitions
+  o as LazyContext
 };
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