@weng-lab/visualization 2.4.0-beta.7 → 2.4.0-beta.8

package/dist/visualization.es108.js

@@ -1,29 +1,17 @@
-import { jsx as h, jsxs as g, Fragment as p } from "react/jsx-runtime";
-import { c as v } from "react/compiler-runtime";
-import { measureTextWidth as y } from "./visualization.es109.js";
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-    align: a
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-  const f = x + 1;
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-  return t[9] !== o || t[10] !== l ? (n = /* @__PURE__ */ g(p, { children: [
-    o,
-    l
-  ] }), t[9] = o, t[10] = l, t[11] = n) : n = t[11], n;
-};
+import { jsx as e } from "react/jsx-runtime";
+import { useBranchLengthTransition as m } from "./visualization.es7.js";
+import { memo as s } from "react";
+import { motion as a } from "./visualization.es45.js";
+const k = s(function({
+  useBranchLengths: n,
+  color: i,
+  baseLeafLinkExtension: o,
+  scaledLeafLinkExtension: t,
+  strokeWidth: r
+}) {
+  return /* @__PURE__ */ e(a.line, { strokeWidth: r, initial: !1, animate: n ? t : o, stroke: i, transition: m });
+});
 export {
-  A as default
+  k as LeafLinkExtension
 };
 //# sourceMappingURL=visualization.es108.js.map

package/dist/visualization.es108.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es108.js","sources":["../src/components/TreeMap/ValueOval.tsx"],"sourcesContent":["import { ValueOvalProps } from \"./types\";\nimport { measureTextWidth } from \"./helpers\";\n\nconst ValueOval: React.FC<ValueOvalProps> = ({ cx, cy, value, color, align }) => {\n    const fontSize = 12;\n    const text = `${value}`;\n    const textWidth = measureTextWidth(text, fontSize, \"sans-serif\");\n    const padding = 6;\n    const ovalWidth = textWidth + padding * 2;\n    const ovalHeight = fontSize * 1.8;\n\n    let xPos = cx;\n    if (align === \"start\") xPos += ovalWidth / 2;\n    if (align === \"end\") xPos -= ovalWidth / 2;\n\n    return (\n        <>\n            <rect\n                x={xPos - ovalWidth / 2}\n                y={cy - ovalHeight / 2}\n                width={ovalWidth}\n                height={ovalHeight}\n                rx={ovalHeight / 2}\n                fill={color}\n            />\n            <text\n                x={xPos}\n                y={cy + 1}\n                textAnchor=\"middle\"\n                dominantBaseline=\"middle\"\n                fill=\"white\"\n                fontSize={fontSize}\n                fontWeight={500}\n            >\n                {text}\n            </text>\n        </>\n    );\n};\n\nexport default ValueOval;"],"names":["ValueOval","t0","$","_c","cx","cy","value","color","align","text","ovalWidth","measureTextWidth","xPos","t1","t2","t3","jsx","ovalHeight","t4","t5","fontSize","t6"],"mappings":";;;AAGA,MAAMA,IAAsCC,CAAAA,MAAA;AAAA,QAAAC,IAAAC,EAAA,EAAA,GAAC;AAAA,IAAAC,IAAAA;AAAAA,IAAAC,IAAAA;AAAAA,IAAAC,OAAAA;AAAAA,IAAAC,OAAAA;AAAAA,IAAAC,OAAAA;AAAAA,EAAAA,IAAAP,GAEzCQ,IAAa,GAAGH,CAAK,IAGrBI,IAFkBC,EAAiBF,GAFlB,IAEkC,YAAY,IAEjC;AAG9B,MAAAG,IAAWR;AACX,EAAII,MAAU,YAASI,IAAAA,IAAQF,IAAY,IACvCF,MAAU,UAAOI,IAAAA,IAAQF,IAAY;AAK1B,QAAAG,IAAAD,IAAOF,IAAY,GACnBI,IAAAT,IAAK;AAAc,MAAAU;AAAA,EAAAb,EAAA,CAAA,MAAAK,KAAAL,EAAA,CAAA,MAAAQ,KAAAR,EAAA,CAAA,MAAAW,KAAAX,SAAAY,KAF1BC,IAAA,gBAAAC,EAAA,QAAA,EACO,GAAAH,GACA,GAAAC,GACIJ,OAAAA,GACCO,QAZDA,MAaH,IAAA,MACEV,MAAAA,GAAK,GACbL,OAAAK,GAAAL,OAAAQ,GAAAR,OAAAW,GAAAX,OAAAY,GAAAZ,OAAAa,KAAAA,IAAAb,EAAA,CAAA;AAGK,QAAAgB,IAAAb,IAAK;AAAC,MAAAc;AAAA,EAAAjB,EAAA,CAAA,MAAAgB,KAAAhB,SAAAO,KAAAP,EAAA,CAAA,MAAAU,KAFbO,gCACOP,GAAAA,GACA,GAAAM,GACQ,YAAA,UACM,kBAAA,UACZ,MAAA,SACKE,UA3BLA,IA4BO,YAAA,KAEXX,UAAAA,GACL,GAAOP,OAAAgB,GAAAhB,OAAAO,GAAAP,OAAAU,GAAAV,OAAAiB,KAAAA,IAAAjB,EAAA,CAAA;AAAA,MAAAmB;AAAA,SAAAnB,EAAA,CAAA,MAAAa,KAAAb,UAAAiB,KAnBXE,2BACIN,UAAAA;AAAAA,IAAAA;AAAAA,IAQAI;AAAAA,EAAAA,GAUO,GACRjB,OAAAa,GAAAb,QAAAiB,GAAAjB,QAAAmB,KAAAA,IAAAnB,EAAA,EAAA,GApBHmB;AAoBG;"}
+{"version":3,"file":"visualization.es108.js","sources":["../src/components/PhyloTree/LeafLinkExtension.tsx"],"sourcesContent":["import { motion } from \"framer-motion\";\nimport { useBranchLengthTransition } from \"./PhyloTree\";\nimport { memo } from \"react\";\nimport { TreeNode } from \"./types\";\n\n\nexport type LeafLinkExtensionProps = {\n  baseLeafLinkExtension: TreeNode[\"baseLeafLinkExtension\"]\n  scaledLeafLinkExtension: TreeNode[\"scaledLeafLinkExtension\"]\n  color: TreeNode[\"color\"];\n  strokeWidth: TreeNode[\"linkStrokeWidth\"]\n  useBranchLengths: boolean\n};\n\nexport const LeafLinkExtension = memo(function LinkExtension({\n  useBranchLengths,\n  color,\n  baseLeafLinkExtension,\n  scaledLeafLinkExtension,\n  strokeWidth\n}: LeafLinkExtensionProps) {\n\n  return (\n    <motion.line\n      strokeWidth={strokeWidth}\n      initial={false}\n      animate={useBranchLengths ? scaledLeafLinkExtension : baseLeafLinkExtension}\n      stroke={color}\n      transition={useBranchLengthTransition}\n    />\n  );\n});\n"],"names":["LeafLinkExtension","memo","useBranchLengths","color","baseLeafLinkExtension","scaledLeafLinkExtension","strokeWidth","jsx","motion","useBranchLengthTransition"],"mappings":";;;;AAcO,MAAMA,IAAoBC,EAAK,SAAuB;AAAA,EAC3DC,kBAAAA;AAAAA,EACAC,OAAAA;AAAAA,EACAC,uBAAAA;AAAAA,EACAC,yBAAAA;AAAAA,EACAC,aAAAA;AACsB,GAAG;AAEzB,SACE,gBAAAC,EAACC,EAAO,MAAP,EACC,aAAAF,GACA,SAAS,IACT,SAASJ,IAAmBG,IAA0BD,GACtD,QAAQD,GACR,YAAYM,GAA0B;AAG5C,CAAC;"}

package/dist/visualization.es109.js

@@ -1,73 +1,29 @@
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-  const n = (t.x0 + t.x1) / 2, e = (t.y0 + t.y1) / 2;
-  switch (c) {
-    case "topLeft":
-      return {
-        textX: t.x0 + 6,
-        textY: t.y0 + 10,
-        valueY: r ? t.y0 + 17 : t.y0 + 40,
-        valueX: r ? t.x1 - 6 : t.x0 + 6,
-        textAnchor: "start",
-        valueAnchor: r ? "end" : "start",
-        baseline: "hanging"
-      };
-    case "topRight":
-      return {
-        textX: t.x1 - 6,
-        textY: t.y0 + 10,
-        valueY: t.y0 + 40,
-        valueX: t.x1 - 6,
-        textAnchor: "end",
-        valueAnchor: "end",
-        baseline: "hanging"
-      };
-    case "bottomLeft":
-      return {
-        textX: t.x0 + 6,
-        textY: a ? t.y1 - 35 : t.y1 - 15,
-        valueY: t.y1 - 15,
-        valueX: t.x0 + 6,
-        textAnchor: "start",
-        valueAnchor: "start",
-        baseline: "alphabetic"
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-        textY: a ? t.y1 - 35 : t.y1 - 15,
-        valueY: t.y1 - 15,
-        valueX: t.x1 - 6,
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-        valueAnchor: "end",
-        baseline: "alphabetic"
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-        textY: a ? e - 5 : e + 5,
-        valueY: e + 15,
-        valueX: n,
-        textAnchor: "middle",
-        valueAnchor: "middle",
-        baseline: "middle"
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-  }
-}
-function l(t, c, a) {
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-  for (; e.length > 0 && n.measureText(e + "…").width > c; )
-    e = e.slice(0, -1);
-  return e === "" ? "" : e + "...";
-}
+import { jsx as u, jsxs as k } from "react/jsx-runtime";
+import { c as g } from "react/compiler-runtime";
+import { memo as j } from "react";
+import O from "./visualization.es34.js";
+const F = j(function(L) {
+  const t = g(16), {
+    nodeX: N,
+    color: e,
+    baseNodeX: f,
+    baseNodeY: i,
+    label: a,
+    fontSize: n,
+    fontFamily: c,
+    strokeWidth: m
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+  let o;
+  t[0] !== e || t[1] !== c || t[2] !== n || t[3] !== m || t[4] !== b || t[5] !== h || t[6] !== p || t[7] !== x ? (o = /* @__PURE__ */ u("text", { fontSize: n, fontFamily: c, fill: e, stroke: e, strokeWidth: m, paintOrder: "stroke", transform: b, textAnchor: p, x, children: h }), t[0] = e, t[1] = c, t[2] = n, t[3] = m, t[4] = b, t[5] = h, t[6] = p, t[7] = x, t[8] = o) : o = t[8];
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+  return t[11] !== f || t[12] !== i || t[13] !== o || t[14] !== r ? (l = /* @__PURE__ */ k(O, { top: i, left: f, children: [
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+    r
+  ] }), t[11] = f, t[12] = i, t[13] = o, t[14] = r, t[15] = l) : l = t[15], l;
+});
 export {
-  x as getLabelPlacement,
-  l as measureTextWidth,
-  s as truncateTextToWidth
+  F as LeafNodeLabel
 };
 //# sourceMappingURL=visualization.es109.js.map

package/dist/visualization.es109.js.map

@@ -1 +1 @@
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package/dist/visualization.es11.js

@@ -1,17 +1,17 @@
 import { jsx as n, jsxs as C, Fragment as z } from "react/jsx-runtime";
 import { useRef as E, useMemo as g, useImperativeHandle as J } from "react";
-import { getTextHeight as O } from "./visualization.es27.js";
-import K from "./visualization.es28.js";
-import { downloadSVGAsPNG as Q, downloadAsSVG as U, getAnimationProps as Z } from "./visualization.es29.js";
+import { getTextHeight as O } from "./visualization.es81.js";
+import K from "./visualization.es89.js";
+import { downloadSVGAsPNG as Q, downloadAsSVG as U, getAnimationProps as Z } from "./visualization.es31.js";
 import { useResponsiveParentSize as _ } from "./visualization.es18.js";
-import R from "./visualization.es30.js";
-import T from "./visualization.es31.js";
-import H from "./visualization.es32.js";
+import R from "./visualization.es26.js";
+import T from "./visualization.es25.js";
+import H from "./visualization.es51.js";
 import { ResponsiveContainer as p } from "./visualization.es14.js";
-import tt from "./visualization.es33.js";
-import { motion as et } from "./visualization.es34.js";
-import N from "./visualization.es35.js";
-import X from "./visualization.es36.js";
+import tt from "./visualization.es34.js";
+import { motion as et } from "./visualization.es45.js";
+import N from "./visualization.es52.js";
+import X from "./visualization.es56.js";
 const xt = (t) => {
   const {
     parentRef: F,

package/dist/visualization.es110.js

@@ -1,5 +1,225 @@
-var e = { exports: {} };
+import { __module as O } from "./visualization.es111.js";
+import { __require as q } from "./visualization.es112.js";
+var j = O.exports, x;
+function W() {
+  return x ? O.exports : (x = 1, (function(b, Q) {
+    (function(c, d) {
+      b.exports = d(q());
+    })(j, function(F) {
+      return (
+        /******/
+        (function(c) {
+          var d = {};
+          function o(i) {
+            if (d[i])
+              return d[i].exports;
+            var n = d[i] = {
+              /******/
+              i,
+              /******/
+              l: !1,
+              /******/
+              exports: {}
+              /******/
+            };
+            return c[i].call(n.exports, n, n.exports, o), n.l = !0, n.exports;
+          }
+          return o.m = c, o.c = d, o.i = function(i) {
+            return i;
+          }, o.d = function(i, n, s) {
+            o.o(i, n) || Object.defineProperty(i, n, {
+              /******/
+              configurable: !1,
+              /******/
+              enumerable: !0,
+              /******/
+              get: s
+              /******/
+            });
+          }, o.n = function(i) {
+            var n = i && i.__esModule ? (
+              /******/
+              function() {
+                return i.default;
+              }
+            ) : (
+              /******/
+              function() {
+                return i;
+              }
+            );
+            return o.d(n, "a", n), n;
+          }, o.o = function(i, n) {
+            return Object.prototype.hasOwnProperty.call(i, n);
+          }, o.p = "", o(o.s = 1);
+        })([
+          /* 0 */
+          /***/
+          (function(c, d) {
+            c.exports = F;
+          }),
+          /* 1 */
+          /***/
+          (function(c, d, o) {
+            var i = o(0).layoutBase.LayoutConstants, n = o(0).layoutBase.FDLayoutConstants, s = o(0).CoSEConstants, H = o(0).CoSELayout, G = o(0).CoSENode, B = o(0).layoutBase.PointD, V = o(0).layoutBase.DimensionD, Y = {
+              // Called on `layoutready`
+              ready: function() {
+              },
+              // Called on `layoutstop`
+              stop: function() {
+              },
+              // 'draft', 'default' or 'proof" 
+              // - 'draft' fast cooling rate 
+              // - 'default' moderate cooling rate 
+              // - "proof" slow cooling rate
+              quality: "default",
+              // include labels in node dimensions
+              nodeDimensionsIncludeLabels: !1,
+              // number of ticks per frame; higher is faster but more jerky
+              refresh: 30,
+              // Whether to fit the network view after when done
+              fit: !0,
+              // Padding on fit
+              padding: 10,
+              // Whether to enable incremental mode
+              randomize: !0,
+              // Node repulsion (non overlapping) multiplier
+              nodeRepulsion: 4500,
+              // Ideal edge (non nested) length
+              idealEdgeLength: 50,
+              // Divisor to compute edge forces
+              edgeElasticity: 0.45,
+              // Nesting factor (multiplier) to compute ideal edge length for nested edges
+              nestingFactor: 0.1,
+              // Gravity force (constant)
+              gravity: 0.25,
+              // Maximum number of iterations to perform
+              numIter: 2500,
+              // For enabling tiling
+              tile: !0,
+              // Type of layout animation. The option set is {'during', 'end', false}
+              animate: "end",
+              // Duration for animate:end
+              animationDuration: 500,
+              // Represents the amount of the vertical space to put between the zero degree members during the tiling operation(can also be a function)
+              tilingPaddingVertical: 10,
+              // Represents the amount of the horizontal space to put between the zero degree members during the tiling operation(can also be a function)
+              tilingPaddingHorizontal: 10,
+              // Gravity range (constant) for compounds
+              gravityRangeCompound: 1.5,
+              // Gravity force (constant) for compounds
+              gravityCompound: 1,
+              // Gravity range (constant)
+              gravityRange: 3.8,
+              // Initial cooling factor for incremental layout
+              initialEnergyOnIncremental: 0.5
+            };
+            function h(u, t) {
+              var l = {};
+              for (var r in u)
+                l[r] = u[r];
+              for (var r in t)
+                l[r] = t[r];
+              return l;
+            }
+            function p(u) {
+              this.options = h(Y, u), w(this.options);
+            }
+            var w = function(t) {
+              t.nodeRepulsion != null && (s.DEFAULT_REPULSION_STRENGTH = n.DEFAULT_REPULSION_STRENGTH = t.nodeRepulsion), t.idealEdgeLength != null && (s.DEFAULT_EDGE_LENGTH = n.DEFAULT_EDGE_LENGTH = t.idealEdgeLength), t.edgeElasticity != null && (s.DEFAULT_SPRING_STRENGTH = n.DEFAULT_SPRING_STRENGTH = t.edgeElasticity), t.nestingFactor != null && (s.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = n.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = t.nestingFactor), t.gravity != null && (s.DEFAULT_GRAVITY_STRENGTH = n.DEFAULT_GRAVITY_STRENGTH = t.gravity), t.numIter != null && (s.MAX_ITERATIONS = n.MAX_ITERATIONS = t.numIter), t.gravityRange != null && (s.DEFAULT_GRAVITY_RANGE_FACTOR = n.DEFAULT_GRAVITY_RANGE_FACTOR = t.gravityRange), t.gravityCompound != null && (s.DEFAULT_COMPOUND_GRAVITY_STRENGTH = n.DEFAULT_COMPOUND_GRAVITY_STRENGTH = t.gravityCompound), t.gravityRangeCompound != null && (s.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = n.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = t.gravityRangeCompound), t.initialEnergyOnIncremental != null && (s.DEFAULT_COOLING_FACTOR_INCREMENTAL = n.DEFAULT_COOLING_FACTOR_INCREMENTAL = t.initialEnergyOnIncremental), t.quality == "draft" ? i.QUALITY = 0 : t.quality == "proof" ? i.QUALITY = 2 : i.QUALITY = 1, s.NODE_DIMENSIONS_INCLUDE_LABELS = n.NODE_DIMENSIONS_INCLUDE_LABELS = i.NODE_DIMENSIONS_INCLUDE_LABELS = t.nodeDimensionsIncludeLabels, s.DEFAULT_INCREMENTAL = n.DEFAULT_INCREMENTAL = i.DEFAULT_INCREMENTAL = !t.randomize, s.ANIMATE = n.ANIMATE = i.ANIMATE = t.animate, s.TILE = t.tile, s.TILING_PADDING_VERTICAL = typeof t.tilingPaddingVertical == "function" ? t.tilingPaddingVertical.call() : t.tilingPaddingVertical, s.TILING_PADDING_HORIZONTAL = typeof t.tilingPaddingHorizontal == "function" ? t.tilingPaddingHorizontal.call() : t.tilingPaddingHorizontal;
+            };
+            p.prototype.run = function() {
+              var u, t, l = this.options;
+              this.idToLNode = {};
+              var r = this.layout = new H(), a = this;
+              a.stopped = !1, this.cy = this.options.cy, this.cy.trigger({ type: "layoutstart", layout: this });
+              var e = r.newGraphManager();
+              this.gm = e;
+              var g = this.options.eles.nodes(), f = this.options.eles.edges();
+              this.root = e.addRoot(), this.processChildrenList(this.root, this.getTopMostNodes(g), r);
+              for (var E = 0; E < f.length; E++) {
+                var A = f[E], v = this.idToLNode[A.data("source")], D = this.idToLNode[A.data("target")];
+                if (v !== D && v.getEdgesBetween(D).length == 0) {
+                  var N = e.add(r.newEdge(), v, D);
+                  N.id = A.id();
+                }
+              }
+              var U = function(L, m) {
+                typeof L == "number" && (L = m);
+                var I = L.data("id"), R = a.idToLNode[I];
+                return {
+                  x: R.getRect().getCenterX(),
+                  y: R.getRect().getCenterY()
+                };
+              }, z = function S() {
+                for (var L = function() {
+                  l.fit && l.cy.fit(l.eles, l.padding), u || (u = !0, a.cy.one("layoutready", l.ready), a.cy.trigger({ type: "layoutready", layout: a }));
+                }, m = a.options.refresh, I, R = 0; R < m && !I; R++)
+                  I = a.stopped || a.layout.tick();
+                if (I) {
+                  r.checkLayoutSuccess() && !r.isSubLayout && r.doPostLayout(), r.tilingPostLayout && r.tilingPostLayout(), r.isLayoutFinished = !0, a.options.eles.nodes().positions(U), L(), a.cy.one("layoutstop", a.options.stop), a.cy.trigger({ type: "layoutstop", layout: a }), t && cancelAnimationFrame(t), u = !1;
+                  return;
+                }
+                var C = a.layout.getPositionsData();
+                l.eles.nodes().positions(function(y, k) {
+                  if (typeof y == "number" && (y = k), !y.isParent()) {
+                    for (var M = y.id(), T = C[M], _ = y; T == null && (T = C[_.data("parent")] || C["DummyCompound_" + _.data("parent")], C[M] = T, _ = _.parent()[0], _ != null); )
+                      ;
+                    return T != null ? {
+                      x: T.x,
+                      y: T.y
+                    } : {
+                      x: y.position("x"),
+                      y: y.position("y")
+                    };
+                  }
+                }), L(), t = requestAnimationFrame(S);
+              };
+              return r.addListener("layoutstarted", function() {
+                a.options.animate === "during" && (t = requestAnimationFrame(z));
+              }), r.runLayout(), this.options.animate !== "during" && (a.options.eles.nodes().not(":parent").layoutPositions(a, a.options, U), u = !1), this;
+            }, p.prototype.getTopMostNodes = function(u) {
+              for (var t = {}, l = 0; l < u.length; l++)
+                t[u[l].id()] = !0;
+              var r = u.filter(function(a, e) {
+                typeof a == "number" && (a = e);
+                for (var g = a.parent()[0]; g != null; ) {
+                  if (t[g.id()])
+                    return !1;
+                  g = g.parent()[0];
+                }
+                return !0;
+              });
+              return r;
+            }, p.prototype.processChildrenList = function(u, t, l) {
+              for (var r = t.length, a = 0; a < r; a++) {
+                var e = t[a], g = e.children(), f, E = e.layoutDimensions({
+                  nodeDimensionsIncludeLabels: this.options.nodeDimensionsIncludeLabels
+                });
+                if (e.outerWidth() != null && e.outerHeight() != null ? f = u.add(new G(l.graphManager, new B(e.position("x") - E.w / 2, e.position("y") - E.h / 2), new V(parseFloat(E.w), parseFloat(E.h)))) : f = u.add(new G(this.graphManager)), f.id = e.data("id"), f.paddingLeft = parseInt(e.css("padding")), f.paddingTop = parseInt(e.css("padding")), f.paddingRight = parseInt(e.css("padding")), f.paddingBottom = parseInt(e.css("padding")), this.options.nodeDimensionsIncludeLabels && e.isParent()) {
+                  var A = e.boundingBox({ includeLabels: !0, includeNodes: !1 }).w, v = e.boundingBox({ includeLabels: !0, includeNodes: !1 }).h, D = e.css("text-halign");
+                  f.labelWidth = A, f.labelHeight = v, f.labelPos = D;
+                }
+                if (this.idToLNode[e.data("id")] = f, isNaN(f.rect.x) && (f.rect.x = 0), isNaN(f.rect.y) && (f.rect.y = 0), g != null && g.length > 0) {
+                  var N;
+                  N = l.getGraphManager().add(l.newGraph(), f), this.processChildrenList(N, g, l);
+                }
+              }
+            }, p.prototype.stop = function() {
+              return this.stopped = !0, this;
+            };
+            var P = function(t) {
+              t("layout", "cose-bilkent", p);
+            };
+            typeof cytoscape < "u" && P(cytoscape), c.exports = P;
+          })
+          /******/
+        ])
+      );
+    });
+  })(O), O.exports);
+}
 export {
-  e as __module
+  W as __require
 };
 //# sourceMappingURL=visualization.es110.js.map

package/dist/visualization.es110.js.map

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+{"version":3,"file":"visualization.es110.js","sources":["../../../node_modules/.pnpm/cytoscape-cose-bilkent@4.1.0_cytoscape@3.33.1/node_modules/cytoscape-cose-bilkent/cytoscape-cose-bilkent.js"],"sourcesContent":["(function webpackUniversalModuleDefinition(root, factory) {\n\tif(typeof exports === 'object' && typeof module === 'object')\n\t\tmodule.exports = factory(require(\"cose-base\"));\n\telse if(typeof define === 'function' && define.amd)\n\t\tdefine([\"cose-base\"], factory);\n\telse if(typeof exports === 'object')\n\t\texports[\"cytoscapeCoseBilkent\"] = factory(require(\"cose-base\"));\n\telse\n\t\troot[\"cytoscapeCoseBilkent\"] = factory(root[\"coseBase\"]);\n})(this, function(__WEBPACK_EXTERNAL_MODULE_0__) {\nreturn /******/ (function(modules) { // webpackBootstrap\n/******/ \t// The module cache\n/******/ \tvar installedModules = {};\n/******/\n/******/ \t// The require function\n/******/ \tfunction __webpack_require__(moduleId) {\n/******/\n/******/ \t\t// Check if module is in cache\n/******/ \t\tif(installedModules[moduleId]) {\n/******/ \t\t\treturn installedModules[moduleId].exports;\n/******/ \t\t}\n/******/ \t\t// Create a new module (and put it into the cache)\n/******/ \t\tvar module = installedModules[moduleId] = {\n/******/ \t\t\ti: moduleId,\n/******/ \t\t\tl: false,\n/******/ \t\t\texports: {}\n/******/ \t\t};\n/******/\n/******/ \t\t// Execute the module function\n/******/ \t\tmodules[moduleId].call(module.exports, module, module.exports, __webpack_require__);\n/******/\n/******/ \t\t// Flag the module as loaded\n/******/ \t\tmodule.l = true;\n/******/\n/******/ \t\t// Return the exports of the module\n/******/ \t\treturn module.exports;\n/******/ \t}\n/******/\n/******/\n/******/ \t// expose the modules object (__webpack_modules__)\n/******/ \t__webpack_require__.m = modules;\n/******/\n/******/ \t// expose the module cache\n/******/ \t__webpack_require__.c = installedModules;\n/******/\n/******/ \t// identity function for calling harmony imports with the correct context\n/******/ \t__webpack_require__.i = function(value) { return value; 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The option set is {'during', 'end', false}\n  animate: 'end',\n  // Duration for animate:end\n  animationDuration: 500,\n  // Represents the amount of the vertical space to put between the zero degree members during the tiling operation(can also be a function)\n  tilingPaddingVertical: 10,\n  // Represents the amount of the horizontal space to put between the zero degree members during the tiling operation(can also be a function)\n  tilingPaddingHorizontal: 10,\n  // Gravity range (constant) for compounds\n  gravityRangeCompound: 1.5,\n  // Gravity force (constant) for compounds\n  gravityCompound: 1.0,\n  // Gravity range (constant)\n  gravityRange: 3.8,\n  // Initial cooling factor for incremental layout\n  initialEnergyOnIncremental: 0.5\n};\n\nfunction extend(defaults, options) {\n  var obj = {};\n\n  for (var i in defaults) {\n    obj[i] = defaults[i];\n  }\n\n  for (var i in options) {\n    obj[i] = options[i];\n  }\n\n  return obj;\n};\n\nfunction _CoSELayout(_options) {\n  this.options = extend(defaults, _options);\n  getUserOptions(this.options);\n}\n\nvar getUserOptions = function getUserOptions(options) {\n  if (options.nodeRepulsion != null) CoSEConstants.DEFAULT_REPULSION_STRENGTH = FDLayoutConstants.DEFAULT_REPULSION_STRENGTH = options.nodeRepulsion;\n  if (options.idealEdgeLength != null) CoSEConstants.DEFAULT_EDGE_LENGTH = FDLayoutConstants.DEFAULT_EDGE_LENGTH = options.idealEdgeLength;\n  if (options.edgeElasticity != null) CoSEConstants.DEFAULT_SPRING_STRENGTH = FDLayoutConstants.DEFAULT_SPRING_STRENGTH = options.edgeElasticity;\n  if (options.nestingFactor != null) CoSEConstants.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = FDLayoutConstants.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = options.nestingFactor;\n  if (options.gravity != null) CoSEConstants.DEFAULT_GRAVITY_STRENGTH = FDLayoutConstants.DEFAULT_GRAVITY_STRENGTH = options.gravity;\n  if (options.numIter != null) CoSEConstants.MAX_ITERATIONS = FDLayoutConstants.MAX_ITERATIONS = options.numIter;\n  if (options.gravityRange != null) CoSEConstants.DEFAULT_GRAVITY_RANGE_FACTOR = FDLayoutConstants.DEFAULT_GRAVITY_RANGE_FACTOR = options.gravityRange;\n  if (options.gravityCompound != null) CoSEConstants.DEFAULT_COMPOUND_GRAVITY_STRENGTH = FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_STRENGTH = options.gravityCompound;\n  if (options.gravityRangeCompound != null) CoSEConstants.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = options.gravityRangeCompound;\n  if (options.initialEnergyOnIncremental != null) CoSEConstants.DEFAULT_COOLING_FACTOR_INCREMENTAL = FDLayoutConstants.DEFAULT_COOLING_FACTOR_INCREMENTAL = options.initialEnergyOnIncremental;\n\n  if (options.quality == 'draft') LayoutConstants.QUALITY = 0;else if (options.quality == 'proof') LayoutConstants.QUALITY = 2;else LayoutConstants.QUALITY = 1;\n\n  CoSEConstants.NODE_DIMENSIONS_INCLUDE_LABELS = FDLayoutConstants.NODE_DIMENSIONS_INCLUDE_LABELS = LayoutConstants.NODE_DIMENSIONS_INCLUDE_LABELS = options.nodeDimensionsIncludeLabels;\n  CoSEConstants.DEFAULT_INCREMENTAL = FDLayoutConstants.DEFAULT_INCREMENTAL = LayoutConstants.DEFAULT_INCREMENTAL = !options.randomize;\n  CoSEConstants.ANIMATE = FDLayoutConstants.ANIMATE = LayoutConstants.ANIMATE = options.animate;\n  CoSEConstants.TILE = options.tile;\n  CoSEConstants.TILING_PADDING_VERTICAL = typeof options.tilingPaddingVertical === 'function' ? options.tilingPaddingVertical.call() : options.tilingPaddingVertical;\n  CoSEConstants.TILING_PADDING_HORIZONTAL = typeof options.tilingPaddingHorizontal === 'function' ? options.tilingPaddingHorizontal.call() : options.tilingPaddingHorizontal;\n};\n\n_CoSELayout.prototype.run = function () {\n  var ready;\n  var frameId;\n  var options = this.options;\n  var idToLNode = this.idToLNode = {};\n  var layout = this.layout = new CoSELayout();\n  var self = this;\n\n  self.stopped = false;\n\n  this.cy = this.options.cy;\n\n  this.cy.trigger({ type: 'layoutstart', layout: this });\n\n  var gm = layout.newGraphManager();\n  this.gm = gm;\n\n  var nodes = this.options.eles.nodes();\n  var edges = this.options.eles.edges();\n\n  this.root = gm.addRoot();\n  this.processChildrenList(this.root, this.getTopMostNodes(nodes), layout);\n\n  for (var i = 0; i < edges.length; i++) {\n    var edge = edges[i];\n    var sourceNode = this.idToLNode[edge.data(\"source\")];\n    var targetNode = this.idToLNode[edge.data(\"target\")];\n    if (sourceNode !== targetNode && sourceNode.getEdgesBetween(targetNode).length == 0) {\n      var e1 = gm.add(layout.newEdge(), sourceNode, targetNode);\n      e1.id = edge.id();\n    }\n  }\n\n  var getPositions = function getPositions(ele, i) {\n    if (typeof ele === \"number\") {\n      ele = i;\n    }\n    var theId = ele.data('id');\n    var lNode = self.idToLNode[theId];\n\n    return {\n      x: lNode.getRect().getCenterX(),\n      y: lNode.getRect().getCenterY()\n    };\n  };\n\n  /*\n   * Reposition nodes in iterations animatedly\n   */\n  var iterateAnimated = function iterateAnimated() {\n    // Thigs to perform after nodes are repositioned on screen\n    var afterReposition = function afterReposition() {\n      if (options.fit) {\n        options.cy.fit(options.eles, options.padding);\n      }\n\n      if (!ready) {\n        ready = true;\n        self.cy.one('layoutready', options.ready);\n        self.cy.trigger({ type: 'layoutready', layout: self });\n      }\n    };\n\n    var ticksPerFrame = self.options.refresh;\n    var isDone;\n\n    for (var i = 0; i < ticksPerFrame && !isDone; i++) {\n      isDone = self.stopped || self.layout.tick();\n    }\n\n    // If layout is done\n    if (isDone) {\n      // If the layout is not a sublayout and it is successful perform post layout.\n      if (layout.checkLayoutSuccess() && !layout.isSubLayout) {\n        layout.doPostLayout();\n      }\n\n      // If layout has a tilingPostLayout function property call it.\n      if (layout.tilingPostLayout) {\n        layout.tilingPostLayout();\n      }\n\n      layout.isLayoutFinished = true;\n\n      self.options.eles.nodes().positions(getPositions);\n\n      afterReposition();\n\n      // trigger layoutstop when the layout stops (e.g. finishes)\n      self.cy.one('layoutstop', self.options.stop);\n      self.cy.trigger({ type: 'layoutstop', layout: self });\n\n      if (frameId) {\n        cancelAnimationFrame(frameId);\n      }\n\n      ready = false;\n      return;\n    }\n\n    var animationData = self.layout.getPositionsData(); // Get positions of layout nodes note that all nodes may not be layout nodes because of tiling\n\n    // Position nodes, for the nodes whose id does not included in data (because they are removed from their parents and included in dummy compounds)\n    // use position of their ancestors or dummy ancestors\n    options.eles.nodes().positions(function (ele, i) {\n      if (typeof ele === \"number\") {\n        ele = i;\n      }\n      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  if (typeof ele === \"number\") {\n      ele = i;\n    }\n    var parent = ele.parent()[0];\n    while (parent != null) {\n      if (nodesMap[parent.id()]) {\n        return false;\n      }\n      parent = parent.parent()[0];\n    }\n    return true;\n  });\n\n  return roots;\n};\n\n_CoSELayout.prototype.processChildrenList = function (parent, children, layout) {\n  var size = children.length;\n  for (var i = 0; i < size; i++) {\n    var theChild = children[i];\n    var children_of_children = theChild.children();\n    var theNode;\n\n    var dimensions = theChild.layoutDimensions({\n      nodeDimensionsIncludeLabels: this.options.nodeDimensionsIncludeLabels\n    });\n\n    if (theChild.outerWidth() != null && theChild.outerHeight() != null) {\n      theNode = parent.add(new CoSENode(layout.graphManager, new PointD(theChild.position('x') - dimensions.w / 2, theChild.position('y') - dimensions.h / 2), new DimensionD(parseFloat(dimensions.w), parseFloat(dimensions.h))));\n    } else {\n  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