@weng-lab/visualization 2.4.0-beta.5 → 2.4.0-beta.7

package/dist/visualization.es61.js

@@ -1,68 +1,114 @@
-import { jsx as b, jsxs as p, Fragment as W } from "react/jsx-runtime";
-import { c as S } from "react/compiler-runtime";
-import { TreeLink as g } from "./visualization.es106.js";
-import { memo as E } from "react";
-import { LeafLinkExtension as M } from "./visualization.es107.js";
-import { LeafNodeLabel as v } from "./visualization.es108.js";
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-    dimmed: m,
-    useBranchLengths: n,
-    leafFontFamily: d,
-    leafFontSize: c,
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-    onNodeMouseLeave: h,
-    onBranchClick: L
-  } = x;
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-  const s = m ? 0.2 : 1;
+import { jsx as l, jsxs as X, Fragment as re } from "react/jsx-runtime";
+import { c as be } from "react/compiler-runtime";
+import { memo as he } from "react";
+import { getAnimationProps as ge } from "./visualization.es29.js";
+import ye from "./visualization.es46.js";
+import { motion as xe } from "./visualization.es34.js";
+import ne from "./visualization.es32.js";
+import se from "./visualization.es113.js";
+import ve from "./visualization.es81.js";
+import ke from "./visualization.es83.js";
+import { defaultStyles as Se } from "./visualization.es49.js";
+import Le from "./visualization.es114.js";
+import ce from "./visualization.es33.js";
+const Te = "Roboto,Helvetica,Arial,sans-serif", Ve = (pe) => {
+  const e = be(70), {
+    index: Y,
+    bar: o,
+    onBarClicked: n,
+    TooltipContents: v,
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+    negativeCutoff: oe,
+    xScale: k,
+    yScale: W,
+    barSize: te,
+    barSpacing: le,
+    gapBetweenTextAndBar: ie,
+    getLollipopRadius: y,
+    animation: S,
+    animationEnabled: fe,
+    animationBuffer: me
+  } = pe;
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+    tooltipData: x,
+    hideTooltip: H,
+    showTooltip: R
+  } = ye(L);
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+  }, e[15] = n, e[16] = s) : s = e[16];
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+  const Q = o.color || "black", U = ee && C === oe ? 0.4 : 1, Z = M ? "black" : o.stroke || "none";
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+  e[24] !== r || e[25] !== a || e[26] !== t || e[27] !== i || e[28] !== Q || e[29] !== U || e[30] !== Z ? (f = /* @__PURE__ */ l(Le, { x: t, y: i, width: a, height: r, fill: Q, opacity: U, rx: 3, stroke: Z }), e[24] = r, e[25] = a, e[26] = t, e[27] = i, e[28] = Q, e[29] = U, e[30] = Z, e[31] = f) : f = e[31];
+  let m;
+  e[32] !== o.color || e[33] !== o.lollipopValue || e[34] !== o.value || e[35] !== r || e[36] !== a || e[37] !== t || e[38] !== i || e[39] !== y || e[40] !== M ? (m = o.lollipopValue && /* @__PURE__ */ X(re, { children: [
+    /* @__PURE__ */ l(se, { r: y(o.lollipopValue) * 1.5, cx: o.value < 0 ? t : t + a, cy: i + r / 2, fill: o.color, stroke: M ? "black" : "none" }),
+    /* @__PURE__ */ l(se, { r: y(o.lollipopValue), cx: o.value < 0 ? t : t + a, cy: i + r / 2, fill: "black" })
+  ] }), e[32] = o.color, e[33] = o.lollipopValue, e[34] = o.value, e[35] = r, e[36] = a, e[37] = t, e[38] = i, e[39] = y, e[40] = M, e[41] = m) : m = e[41];
+  let d;
+  e[42] !== o.label || e[43] !== N || e[44] !== O ? (d = /* @__PURE__ */ l(ne, { x: N, y: O, dy: ".35em", textAnchor: "start", fill: "black", fontSize: 12, children: o.label }), e[42] = o.label, e[43] = N, e[44] = O, e[45] = d) : d = e[45];
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-}), T = E(function(e) {
-  const o = S(11), {
-    node: m,
-    hovered: n,
-    useBranchLengths: d,
-    onNodeMouseMove: c,
-    onNodeMouseLeave: k,
-    onBranchClick: h,
-    leafFontSize: L,
-    leafFontFamily: a
-  } = e;
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-    if (!s.parent)
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-  let i;
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-});
-function P(x) {
-  return x.data.id;
-}
+  e[46] !== f || e[47] !== m || e[48] !== d ? (u = /* @__PURE__ */ X(ce, { children: [
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+    d
+  ] }), e[46] = f, e[47] = m, e[48] = d, e[49] = u) : u = e[49];
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+  e[54] !== $ || e[55] !== E || e[56] !== p || e[57] !== b || e[58] !== s || e[59] !== c ? (h = /* @__PURE__ */ X(ce, { onClick: $, style: s, onMouseMove: c, onMouseLeave: E, fontFamily: Te, children: [
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+    b
+  ] }), e[54] = $, e[55] = E, e[56] = p, e[57] = b, e[58] = s, e[59] = c, e[60] = h) : h = e[60];
+  let g;
+  e[61] !== v || e[62] !== x || e[63] !== D || e[64] !== j || e[65] !== F ? (g = v && j && /* @__PURE__ */ l(ve, { children: /* @__PURE__ */ l(ke, { top: F, left: D, style: {
+    ...Se,
+    backgroundColor: "#283238",
+    color: "white",
+    zIndex: 1e3
+  }, children: x && /* @__PURE__ */ l(v, { ...x }) }) }), e[61] = v, e[62] = x, e[63] = D, e[64] = j, e[65] = F, e[66] = g) : g = e[66];
+  let w;
+  return e[67] !== h || e[68] !== g ? (w = /* @__PURE__ */ X(re, { children: [
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+  ] }), e[67] = h, e[68] = g, e[69] = w) : w = e[69], w;
+}, He = he(Ve);
 export {
-  T as RenderTree
+  He as default
 };
 //# sourceMappingURL=visualization.es61.js.map

package/dist/visualization.es61.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es61.js","sources":["../src/components/PhyloTree/RenderTree.tsx"],"sourcesContent":["import { PhyloTreeProps, TreeNode } from \"./types\";\nimport { TreeLink } from \"./TreeLink\";\nimport { memo } from \"react\";\nimport { LeafLinkExtension } from \"./LeafLinkExtension\";\nimport { LeafNodeLabel } from \"./LeafNodeLabel\";\n\ntype Shared = {\n  node: TreeNode;\n  useBranchLengths: boolean;\n  leafFontSize: PhyloTreeProps[\"leafFontSize\"];\n  leafFontFamily: PhyloTreeProps[\"leafFontFamily\"];\n  onNodeMouseMove: (event: React.MouseEvent, node: TreeNode) => void;\n  onNodeMouseLeave: (event: React.MouseEvent, node: TreeNode) => void;\n  onBranchClick: (leafIds: string[]) => void;\n};\n\nexport type RenderTreeProps = Shared & {\n  hovered: string[];\n};\n\nexport type RenderChildProps = Shared & {\n  dimmed: boolean;\n};\n\nconst ChildNode = memo(\n  ({ node, dimmed, useBranchLengths, leafFontFamily, leafFontSize, onNodeMouseMove, onNodeMouseLeave, onBranchClick }: RenderChildProps) => {\n    return (\n      <g\n        onMouseMove={(e: React.MouseEvent) => onNodeMouseMove(e, node)}\n        onMouseLeave={(e: React.MouseEvent) => onNodeMouseLeave(e, node)}\n        onClick={() => onBranchClick(node.leaves().map(x => x.data.id))}\n        id={node.data.id}\n        opacity={dimmed ? 0.2 : 1}\n        style={{ transition: \"opacity 0.2s ease-in\" }}\n      >\n        <TreeLink\n          scaledLinkPath={node.scaledLinkPath}\n          baseLinkPath={node.baseLinkPath}\n          color={node.color}\n          strokeWidth={node.linkStrokeWidth}\n          useBranchLengths={useBranchLengths}\n          />\n        {!node.children && (\n          <>\n            <LeafLinkExtension\n              useBranchLengths={useBranchLengths}\n              color={node.lightenedLinkExtColor}\n              baseLeafLinkExtension={node.baseLeafLinkExtension}\n              scaledLeafLinkExtension={node.scaledLeafLinkExtension}\n              strokeWidth={node.linkStrokeWidth}\n            />\n            <LeafNodeLabel\n              nodeX={node.x}\n              strokeWidth={node.labelStrokeWidth}\n              baseNodeX={node.baseNodeX}\n              baseNodeY={node.baseNodeY}\n              label={node.label}\n              color={node.color}\n              fontSize={leafFontSize}\n              fontFamily={leafFontFamily}\n            />\n          </>\n        )}\n      </g>\n    );\n  }\n);\n\nexport const RenderTree = memo(function RenderTree({\n  node,\n  hovered,\n  useBranchLengths,\n  onNodeMouseMove,\n  onNodeMouseLeave,\n  onBranchClick,\n  leafFontSize,\n  leafFontFamily,\n}: RenderTreeProps) {\n  return (\n    <g id={\"tree-root\"}>\n      {/* no root node rendered (since root does not need to display link to parent) */}\n      {node.descendants()?.map((child, i) => {\n        if (!child.parent) return;\n        //This is done to elimate a .ancestors() and .descendants() traversal on every rerender\n        const dimmed = !!hovered.length && !(hovered.some(id => child.descendantIds?.has(id) || child.ancestorIds?.has(id)));\n\n        return (\n          <ChildNode\n            key={i}\n            node={child}\n            dimmed={dimmed}\n            useBranchLengths={useBranchLengths}\n            leafFontSize={leafFontSize}\n            leafFontFamily={leafFontFamily}\n            onBranchClick={onBranchClick}\n            onNodeMouseMove={onNodeMouseMove}\n            onNodeMouseLeave={onNodeMouseLeave}\n          />\n        );\n      })}\n    </g>\n  );\n}, 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package/dist/visualization.es610.js

@@ -1,9 +1,7 @@
-function t(n) {
-  return function() {
-    return n;
-  };
+function n(e) {
+  return +e;
 }
 export {
-  t as default
+  n as default
 };
 //# sourceMappingURL=visualization.es610.js.map

package/dist/visualization.es610.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es610.js","sources":["../../../node_modules/.pnpm/d3-scale@4.0.2/node_modules/d3-scale/src/constant.js"],"sourcesContent":["export default function constants(x) {\n  return function() {\n    return x;\n  };\n}\n"],"names":["constants","x"],"mappings":"AAAe,SAASA,EAAUC,GAAG;AACnC,SAAO,WAAW;AAChB,WAAOA;AAAA,EACT;AACF;","x_google_ignoreList":[0]}
+{"version":3,"file":"visualization.es610.js","sources":["../../../node_modules/.pnpm/d3-scale@4.0.2/node_modules/d3-scale/src/number.js"],"sourcesContent":["export default function number(x) {\n  return +x;\n}\n"],"names":["number","x"],"mappings":"AAAe,SAASA,EAAOC,GAAG;AAChC,SAAO,CAACA;AACV;","x_google_ignoreList":[0]}

package/dist/visualization.es612.js

@@ -1,4 +1,4 @@
-import e from "./visualization.es585.js";
+import e from "./visualization.es590.js";
 import { genericArray as a } from "./visualization.es626.js";
 import f from "./visualization.es627.js";
 import i from "./visualization.es611.js";

package/dist/visualization.es613.js

@@ -1,7 +1,121 @@
-function m(a, t, e) {
-  return Math.min(Math.max(a, t), e);
+var i, h;
+function f() {
+  if (h) return i;
+  h = 1;
+  var r = function(t) {
+    this.value = t;
+  };
+  return r.math = {
+    isDegree: !0,
+    // mode of calculator
+    acos: function(t) {
+      return r.math.isDegree ? 180 / Math.PI * Math.acos(t) : Math.acos(t);
+    },
+    add: function(t, n) {
+      return t + n;
+    },
+    asin: function(t) {
+      return r.math.isDegree ? 180 / Math.PI * Math.asin(t) : Math.asin(t);
+    },
+    atan: function(t) {
+      return r.math.isDegree ? 180 / Math.PI * Math.atan(t) : Math.atan(t);
+    },
+    acosh: function(t) {
+      return Math.log(t + Math.sqrt(t * t - 1));
+    },
+    asinh: function(t) {
+      return Math.log(t + Math.sqrt(t * t + 1));
+    },
+    atanh: function(t) {
+      return Math.log((1 + t) / (1 - t));
+    },
+    C: function(t, n) {
+      var o = 1, a = t - n, u = n;
+      u < a && (u = a, a = n);
+      for (var e = u + 1; e <= t; e++)
+        o *= e;
+      return o / r.math.fact(a);
+    },
+    changeSign: function(t) {
+      return -t;
+    },
+    cos: function(t) {
+      return r.math.isDegree && (t = r.math.toRadian(t)), Math.cos(t);
+    },
+    cosh: function(t) {
+      return (Math.pow(Math.E, t) + Math.pow(Math.E, -1 * t)) / 2;
+    },
+    div: function(t, n) {
+      return t / n;
+    },
+    fact: function(t) {
+      if (t % 1 !== 0) return "NaN";
+      for (var n = 1, o = 2; o <= t; o++)
+        n *= o;
+      return n;
+    },
+    inverse: function(t) {
+      return 1 / t;
+    },
+    log: function(t) {
+      return Math.log(t) / Math.log(10);
+    },
+    mod: function(t, n) {
+      return t % n;
+    },
+    mul: function(t, n) {
+      return t * n;
+    },
+    P: function(t, n) {
+      for (var o = 1, a = Math.floor(t) - Math.floor(n) + 1; a <= Math.floor(t); a++)
+        o *= a;
+      return o;
+    },
+    Pi: function(t, n, o) {
+      for (var a = 1, u = t; u <= n; u++)
+        a *= Number(o.postfixEval({
+          n: u
+        }));
+      return a;
+    },
+    pow10x: function(t) {
+      for (var n = 1; t--; )
+        n *= 10;
+      return n;
+    },
+    sigma: function(t, n, o) {
+      for (var a = 0, u = t; u <= n; u++)
+        a += Number(o.postfixEval({
+          n: u
+        }));
+      return a;
+    },
+    sin: function(t) {
+      return r.math.isDegree && (t = r.math.toRadian(t)), Math.sin(t);
+    },
+    sinh: function(t) {
+      return (Math.pow(Math.E, t) - Math.pow(Math.E, -1 * t)) / 2;
+    },
+    sub: function(t, n) {
+      return t - n;
+    },
+    tan: function(t) {
+      return r.math.isDegree && (t = r.math.toRadian(t)), Math.tan(t);
+    },
+    tanh: function(t) {
+      return r.sinha(t) / r.cosha(t);
+    },
+    toRadian: function(t) {
+      return t * Math.PI / 180;
+    },
+    and: function(t, n) {
+      return t & n;
+    }
+  }, r.Exception = function(t) {
+    this.message = t;
+  }, i = r, i;
 }
 export {
-  m as default
+  f as __require
 };
 //# sourceMappingURL=visualization.es613.js.map

package/dist/visualization.es613.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es613.js","sources":["../../../node_modules/.pnpm/@visx+drag@4.0.0_@types+react@19.2.14_react@19.2.4/node_modules/@visx/drag/esm/util/clampNumber.js"],"sourcesContent":["/** Clamps number within the inclusive lower and upper bounds. */\nexport default function clampNumber(number, lower, upper) {\n  return Math.min(Math.max(number, lower), upper);\n}"],"names":["clampNumber","number","lower","upper"],"mappings":"AACe,SAASA,EAAYC,GAAQC,GAAOC,GAAO;AACxD,SAAO,KAAK,IAAI,KAAK,IAAIF,GAAQC,CAAK,GAAGC,CAAK;AAChD;","x_google_ignoreList":[0]}
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package/dist/visualization.es614.js

@@ -1,15 +1,7 @@
-function a(e, i) {
-  let s = e, n = 1 / 0;
-  for (const t of i) {
-    const o = Math.sqrt((t.x - e.x) ** 2 + (t.y - e.y) ** 2);
-    o < n && (n = o, s = {
-      x: t.x,
-      y: t.y
-    });
-  }
-  return s;
+function m(a, t, e) {
+  return Math.min(Math.max(a, t), e);
 }
 export {
-  a as default
+  m as default
 };
 //# sourceMappingURL=visualization.es614.js.map

package/dist/visualization.es614.js.map

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package/dist/visualization.es615.js

@@ -1,121 +1,15 @@
-var i, h;
-function f() {
-  if (h) return i;
-  h = 1;
-  var r = function(t) {
-    this.value = t;
-  };
-  return r.math = {
-    isDegree: !0,
-    // mode of calculator
-    acos: function(t) {
-      return r.math.isDegree ? 180 / Math.PI * Math.acos(t) : Math.acos(t);
-    },
-    add: function(t, n) {
-      return t + n;
-    },
-    asin: function(t) {
-      return r.math.isDegree ? 180 / Math.PI * Math.asin(t) : Math.asin(t);
-    },
-    atan: function(t) {
-      return r.math.isDegree ? 180 / Math.PI * Math.atan(t) : Math.atan(t);
-    },
-    acosh: function(t) {
-      return Math.log(t + Math.sqrt(t * t - 1));
-    },
-    asinh: function(t) {
-      return Math.log(t + Math.sqrt(t * t + 1));
-    },
-    atanh: function(t) {
-      return Math.log((1 + t) / (1 - t));
-    },
-    C: function(t, n) {
-      var o = 1, a = t - n, u = n;
-      u < a && (u = a, a = n);
-      for (var e = u + 1; e <= t; e++)
-        o *= e;
-      return o / r.math.fact(a);
-    },
-    changeSign: function(t) {
-      return -t;
-    },
-    cos: function(t) {
-      return r.math.isDegree && (t = r.math.toRadian(t)), Math.cos(t);
-    },
-    cosh: function(t) {
-      return (Math.pow(Math.E, t) + Math.pow(Math.E, -1 * t)) / 2;
-    },
-    div: function(t, n) {
-      return t / n;
-    },
-    fact: function(t) {
-      if (t % 1 !== 0) return "NaN";
-      for (var n = 1, o = 2; o <= t; o++)
-        n *= o;
-      return n;
-    },
-    inverse: function(t) {
-      return 1 / t;
-    },
-    log: function(t) {
-      return Math.log(t) / Math.log(10);
-    },
-    mod: function(t, n) {
-      return t % n;
-    },
-    mul: function(t, n) {
-      return t * n;
-    },
-    P: function(t, n) {
-      for (var o = 1, a = Math.floor(t) - Math.floor(n) + 1; a <= Math.floor(t); a++)
-        o *= a;
-      return o;
-    },
-    Pi: function(t, n, o) {
-      for (var a = 1, u = t; u <= n; u++)
-        a *= Number(o.postfixEval({
-          n: u
-        }));
-      return a;
-    },
-    pow10x: function(t) {
-      for (var n = 1; t--; )
-        n *= 10;
-      return n;
-    },
-    sigma: function(t, n, o) {
-      for (var a = 0, u = t; u <= n; u++)
-        a += Number(o.postfixEval({
-          n: u
-        }));
-      return a;
-    },
-    sin: function(t) {
-      return r.math.isDegree && (t = r.math.toRadian(t)), Math.sin(t);
-    },
-    sinh: function(t) {
-      return (Math.pow(Math.E, t) - Math.pow(Math.E, -1 * t)) / 2;
-    },
-    sub: function(t, n) {
-      return t - n;
-    },
-    tan: function(t) {
-      return r.math.isDegree && (t = r.math.toRadian(t)), Math.tan(t);
-    },
-    tanh: function(t) {
-      return r.sinha(t) / r.cosha(t);
-    },
-    toRadian: function(t) {
-      return t * Math.PI / 180;
-    },
-    and: function(t, n) {
-      return t & n;
-    }
-  }, r.Exception = function(t) {
-    this.message = t;
-  }, i = r, i;
+function a(e, i) {
+  let s = e, n = 1 / 0;
+  for (const t of i) {
+    const o = Math.sqrt((t.x - e.x) ** 2 + (t.y - e.y) ** 2);
+    o < n && (n = o, s = {
+      x: t.x,
+      y: t.y
+    });
+  }
+  return s;
 }
 export {
-  f as __require
+  a as default
 };
 //# sourceMappingURL=visualization.es615.js.map

package/dist/visualization.es615.js.map

@@ -1 +1 @@
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