@weng-lab/visualization 2.4.0-beta.5 → 2.4.0-beta.6

package/dist/visualization.es108.js.map

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package/dist/visualization.es109.js

@@ -1,225 +1,64 @@
-import { __module as O } from "./visualization.es110.js";
-import { __require as q } from "./visualization.es111.js";
-var j = O.exports, x;
-function W() {
-  return x ? O.exports : (x = 1, (function(b, Q) {
-    (function(c, d) {
-      b.exports = d(q());
-    })(j, function(F) {
-      return (
-        /******/
-        (function(c) {
-          var d = {};
-          function o(i) {
-            if (d[i])
-              return d[i].exports;
-            var n = d[i] = {
-              /******/
-              i,
-              /******/
-              l: !1,
-              /******/
-              exports: {}
-              /******/
-            };
-            return c[i].call(n.exports, n, n.exports, o), n.l = !0, n.exports;
-          }
-          return o.m = c, o.c = d, o.i = function(i) {
-            return i;
-          }, o.d = function(i, n, s) {
-            o.o(i, n) || Object.defineProperty(i, n, {
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-              configurable: !1,
-              /******/
-              enumerable: !0,
-              /******/
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-              /******/
-            });
-          }, o.n = function(i) {
-            var n = i && i.__esModule ? (
-              /******/
-              function() {
-                return i.default;
-              }
-            ) : (
-              /******/
-              function() {
-                return i;
-              }
-            );
-            return o.d(n, "a", n), n;
-          }, o.o = function(i, n) {
-            return Object.prototype.hasOwnProperty.call(i, n);
-          }, o.p = "", o(o.s = 1);
-        })([
-          /* 0 */
-          /***/
-          (function(c, d) {
-            c.exports = F;
-          }),
-          /* 1 */
-          /***/
-          (function(c, d, o) {
-            var i = o(0).layoutBase.LayoutConstants, n = o(0).layoutBase.FDLayoutConstants, s = o(0).CoSEConstants, H = o(0).CoSELayout, G = o(0).CoSENode, B = o(0).layoutBase.PointD, V = o(0).layoutBase.DimensionD, Y = {
-              // Called on `layoutready`
-              ready: function() {
-              },
-              // Called on `layoutstop`
-              stop: function() {
-              },
-              // 'draft', 'default' or 'proof" 
-              // - 'draft' fast cooling rate 
-              // - 'default' moderate cooling rate 
-              // - "proof" slow cooling rate
-              quality: "default",
-              // include labels in node dimensions
-              nodeDimensionsIncludeLabels: !1,
-              // number of ticks per frame; higher is faster but more jerky
-              refresh: 30,
-              // Whether to fit the network view after when done
-              fit: !0,
-              // Padding on fit
-              padding: 10,
-              // Whether to enable incremental mode
-              randomize: !0,
-              // Node repulsion (non overlapping) multiplier
-              nodeRepulsion: 4500,
-              // Ideal edge (non nested) length
-              idealEdgeLength: 50,
-              // Divisor to compute edge forces
-              edgeElasticity: 0.45,
-              // Nesting factor (multiplier) to compute ideal edge length for nested edges
-              nestingFactor: 0.1,
-              // Gravity force (constant)
-              gravity: 0.25,
-              // Maximum number of iterations to perform
-              numIter: 2500,
-              // For enabling tiling
-              tile: !0,
-              // Type of layout animation. The option set is {'during', 'end', false}
-              animate: "end",
-              // Duration for animate:end
-              animationDuration: 500,
-              // Represents the amount of the vertical space to put between the zero degree members during the tiling operation(can also be a function)
-              tilingPaddingVertical: 10,
-              // Represents the amount of the horizontal space to put between the zero degree members during the tiling operation(can also be a function)
-              tilingPaddingHorizontal: 10,
-              // Gravity range (constant) for compounds
-              gravityRangeCompound: 1.5,
-              // Gravity force (constant) for compounds
-              gravityCompound: 1,
-              // Gravity range (constant)
-              gravityRange: 3.8,
-              // Initial cooling factor for incremental layout
-              initialEnergyOnIncremental: 0.5
-            };
-            function h(u, t) {
-              var l = {};
-              for (var r in u)
-                l[r] = u[r];
-              for (var r in t)
-                l[r] = t[r];
-              return l;
-            }
-            function p(u) {
-              this.options = h(Y, u), w(this.options);
-            }
-            var w = function(t) {
-              t.nodeRepulsion != null && (s.DEFAULT_REPULSION_STRENGTH = n.DEFAULT_REPULSION_STRENGTH = t.nodeRepulsion), t.idealEdgeLength != null && (s.DEFAULT_EDGE_LENGTH = n.DEFAULT_EDGE_LENGTH = t.idealEdgeLength), t.edgeElasticity != null && (s.DEFAULT_SPRING_STRENGTH = n.DEFAULT_SPRING_STRENGTH = t.edgeElasticity), t.nestingFactor != null && (s.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = n.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = t.nestingFactor), t.gravity != null && (s.DEFAULT_GRAVITY_STRENGTH = n.DEFAULT_GRAVITY_STRENGTH = t.gravity), t.numIter != null && (s.MAX_ITERATIONS = n.MAX_ITERATIONS = t.numIter), t.gravityRange != null && (s.DEFAULT_GRAVITY_RANGE_FACTOR = n.DEFAULT_GRAVITY_RANGE_FACTOR = t.gravityRange), t.gravityCompound != null && (s.DEFAULT_COMPOUND_GRAVITY_STRENGTH = n.DEFAULT_COMPOUND_GRAVITY_STRENGTH = t.gravityCompound), t.gravityRangeCompound != null && (s.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = n.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = t.gravityRangeCompound), t.initialEnergyOnIncremental != null && (s.DEFAULT_COOLING_FACTOR_INCREMENTAL = n.DEFAULT_COOLING_FACTOR_INCREMENTAL = t.initialEnergyOnIncremental), t.quality == "draft" ? i.QUALITY = 0 : t.quality == "proof" ? i.QUALITY = 2 : i.QUALITY = 1, s.NODE_DIMENSIONS_INCLUDE_LABELS = n.NODE_DIMENSIONS_INCLUDE_LABELS = i.NODE_DIMENSIONS_INCLUDE_LABELS = t.nodeDimensionsIncludeLabels, s.DEFAULT_INCREMENTAL = n.DEFAULT_INCREMENTAL = i.DEFAULT_INCREMENTAL = !t.randomize, s.ANIMATE = n.ANIMATE = i.ANIMATE = t.animate, s.TILE = t.tile, s.TILING_PADDING_VERTICAL = typeof t.tilingPaddingVertical == "function" ? t.tilingPaddingVertical.call() : t.tilingPaddingVertical, s.TILING_PADDING_HORIZONTAL = typeof t.tilingPaddingHorizontal == "function" ? t.tilingPaddingHorizontal.call() : t.tilingPaddingHorizontal;
-            };
-            p.prototype.run = function() {
-              var u, t, l = this.options;
-              this.idToLNode = {};
-              var r = this.layout = new H(), a = this;
-              a.stopped = !1, this.cy = this.options.cy, this.cy.trigger({ type: "layoutstart", layout: this });
-              var e = r.newGraphManager();
-              this.gm = e;
-              var g = this.options.eles.nodes(), f = this.options.eles.edges();
-              this.root = e.addRoot(), this.processChildrenList(this.root, this.getTopMostNodes(g), r);
-              for (var E = 0; E < f.length; E++) {
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-                if (v !== D && v.getEdgesBetween(D).length == 0) {
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-                  N.id = A.id();
-                }
-              }
-              var U = function(L, m) {
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-                return {
-                  x: R.getRect().getCenterX(),
-                  y: R.getRect().getCenterY()
-                };
-              }, z = function S() {
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-                }, m = a.options.refresh, I, R = 0; R < m && !I; R++)
-                  I = a.stopped || a.layout.tick();
-                if (I) {
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-                  return;
-                }
-                var C = a.layout.getPositionsData();
-                l.eles.nodes().positions(function(y, k) {
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-                      y: T.y
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-                      y: y.position("y")
-                    };
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-                }), L(), t = requestAnimationFrame(S);
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-              }), r.runLayout(), this.options.animate !== "during" && (a.options.eles.nodes().not(":parent").layoutPositions(a, a.options, U), u = !1), this;
-            }, p.prototype.getTopMostNodes = function(u) {
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-                t[u[l].id()] = !0;
-              var r = u.filter(function(a, e) {
-                typeof a == "number" && (a = e);
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-                });
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-            };
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+import C from "./visualization.es127.js";
+import { jsx as o, Fragment as F } from "react/jsx-runtime";
+import G from "./visualization.es31.js";
+function R(m) {
+  let {
+    className: n,
+    top: u,
+    left: f,
+    data: d = [],
+    gap: t = 1,
+    radius: e = 6,
+    xScale: x,
+    yScale: y,
+    colorScale: h = () => {
+    },
+    opacityScale: S = () => 1,
+    bins: N = (a) => a?.bins,
+    // eslint-disable-line @typescript-eslint/no-explicit-any
+    count: g = (a) => a?.count,
+    // eslint-disable-line @typescript-eslint/no-explicit-any
+    children: l,
+    ...v
+  } = m;
+  const $ = e - t, p = d.map((a, c) => {
+    const j = x(c);
+    return N(a).map((i, s) => {
+      const r = g(i);
+      return {
+        bin: i,
+        row: s,
+        column: c,
+        datum: a,
+        radius: e,
+        gap: t,
+        count: r,
+        cx: e + j,
+        cy: y(s) + t + e,
+        r: $,
+        opacity: S(r),
+        color: h(r)
+      };
     });
-  })(O), O.exports);
+  });
+  return l ? /* @__PURE__ */ o(F, {
+    children: l(p)
+  }) : /* @__PURE__ */ o(G, {
+    className: "visx-heatmap-circles",
+    top: u,
+    left: f,
+    children: p.map((a) => a.map((c) => /* @__PURE__ */ o("circle", {
+      className: C("visx-heatmap-circle", n),
+      r: c.r,
+      cx: c.cx,
+      cy: c.cy,
+      fill: c.color,
+      fillOpacity: c.opacity,
+      ...v
+    }, `heatmap-tile-circle-${c.row}-${c.column}`)))
+  });
 }
 export {
-  W as __require
+  R as default
 };
 //# sourceMappingURL=visualization.es109.js.map

package/dist/visualization.es109.js.map

@@ -1 +1 @@
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higher is faster but more jerky\n  refresh: 30,\n  // Whether to fit the network view after when done\n  fit: true,\n  // Padding on fit\n  padding: 10,\n  // Whether to enable incremental mode\n  randomize: true,\n  // Node repulsion (non overlapping) multiplier\n  nodeRepulsion: 4500,\n  // Ideal edge (non nested) length\n  idealEdgeLength: 50,\n  // Divisor to compute edge forces\n  edgeElasticity: 0.45,\n  // Nesting factor (multiplier) to compute ideal edge length for nested edges\n  nestingFactor: 0.1,\n  // Gravity force (constant)\n  gravity: 0.25,\n  // Maximum number of iterations to perform\n  numIter: 2500,\n  // For enabling tiling\n  tile: true,\n  // Type of layout animation. The option set is {'during', 'end', false}\n  animate: 'end',\n  // Duration for animate:end\n  animationDuration: 500,\n  // Represents the amount of the vertical space to put between the zero degree members during the tiling operation(can also be a function)\n  tilingPaddingVertical: 10,\n  // Represents the amount of the horizontal space to put between the zero degree members during the tiling operation(can also be a function)\n  tilingPaddingHorizontal: 10,\n  // Gravity range (constant) for compounds\n  gravityRangeCompound: 1.5,\n  // Gravity force (constant) for compounds\n  gravityCompound: 1.0,\n  // Gravity range (constant)\n  gravityRange: 3.8,\n  // Initial cooling factor for incremental layout\n  initialEnergyOnIncremental: 0.5\n};\n\nfunction extend(defaults, options) {\n  var obj = {};\n\n  for (var i in defaults) {\n    obj[i] = defaults[i];\n  }\n\n  for (var i in options) {\n    obj[i] = options[i];\n  }\n\n  return obj;\n};\n\nfunction _CoSELayout(_options) {\n  this.options = extend(defaults, _options);\n  getUserOptions(this.options);\n}\n\nvar getUserOptions = function getUserOptions(options) {\n  if (options.nodeRepulsion != null) CoSEConstants.DEFAULT_REPULSION_STRENGTH = FDLayoutConstants.DEFAULT_REPULSION_STRENGTH = options.nodeRepulsion;\n  if (options.idealEdgeLength != null) CoSEConstants.DEFAULT_EDGE_LENGTH = FDLayoutConstants.DEFAULT_EDGE_LENGTH = options.idealEdgeLength;\n  if (options.edgeElasticity != null) CoSEConstants.DEFAULT_SPRING_STRENGTH = FDLayoutConstants.DEFAULT_SPRING_STRENGTH = options.edgeElasticity;\n  if (options.nestingFactor != null) CoSEConstants.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = FDLayoutConstants.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = options.nestingFactor;\n  if (options.gravity != null) CoSEConstants.DEFAULT_GRAVITY_STRENGTH = FDLayoutConstants.DEFAULT_GRAVITY_STRENGTH = options.gravity;\n  if (options.numIter != null) CoSEConstants.MAX_ITERATIONS = FDLayoutConstants.MAX_ITERATIONS = options.numIter;\n  if (options.gravityRange != null) CoSEConstants.DEFAULT_GRAVITY_RANGE_FACTOR = FDLayoutConstants.DEFAULT_GRAVITY_RANGE_FACTOR = options.gravityRange;\n  if (options.gravityCompound != null) CoSEConstants.DEFAULT_COMPOUND_GRAVITY_STRENGTH = FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_STRENGTH = options.gravityCompound;\n  if (options.gravityRangeCompound != null) CoSEConstants.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = options.gravityRangeCompound;\n  if (options.initialEnergyOnIncremental != null) CoSEConstants.DEFAULT_COOLING_FACTOR_INCREMENTAL = FDLayoutConstants.DEFAULT_COOLING_FACTOR_INCREMENTAL = options.initialEnergyOnIncremental;\n\n  if (options.quality == 'draft') LayoutConstants.QUALITY = 0;else if (options.quality == 'proof') LayoutConstants.QUALITY = 2;else LayoutConstants.QUALITY = 1;\n\n  CoSEConstants.NODE_DIMENSIONS_INCLUDE_LABELS = FDLayoutConstants.NODE_DIMENSIONS_INCLUDE_LABELS = LayoutConstants.NODE_DIMENSIONS_INCLUDE_LABELS = options.nodeDimensionsIncludeLabels;\n  CoSEConstants.DEFAULT_INCREMENTAL = FDLayoutConstants.DEFAULT_INCREMENTAL = LayoutConstants.DEFAULT_INCREMENTAL = !options.randomize;\n  CoSEConstants.ANIMATE = FDLayoutConstants.ANIMATE = LayoutConstants.ANIMATE = options.animate;\n  CoSEConstants.TILE = options.tile;\n  CoSEConstants.TILING_PADDING_VERTICAL = typeof options.tilingPaddingVertical === 'function' ? options.tilingPaddingVertical.call() : options.tilingPaddingVertical;\n  CoSEConstants.TILING_PADDING_HORIZONTAL = typeof options.tilingPaddingHorizontal === 'function' ? options.tilingPaddingHorizontal.call() : options.tilingPaddingHorizontal;\n};\n\n_CoSELayout.prototype.run = function () {\n  var ready;\n  var frameId;\n  var options = this.options;\n  var idToLNode = this.idToLNode = {};\n  var layout = this.layout = new CoSELayout();\n  var self = this;\n\n  self.stopped = false;\n\n  this.cy = this.options.cy;\n\n  this.cy.trigger({ type: 'layoutstart', layout: this });\n\n  var gm = layout.newGraphManager();\n  this.gm = gm;\n\n  var nodes = this.options.eles.nodes();\n  var edges = this.options.eles.edges();\n\n  this.root = gm.addRoot();\n  this.processChildrenList(this.root, this.getTopMostNodes(nodes), layout);\n\n  for (var i = 0; i < edges.length; i++) {\n    var edge = edges[i];\n    var sourceNode = this.idToLNode[edge.data(\"source\")];\n    var targetNode = this.idToLNode[edge.data(\"target\")];\n    if (sourceNode !== targetNode && sourceNode.getEdgesBetween(targetNode).length == 0) {\n      var e1 = gm.add(layout.newEdge(), sourceNode, targetNode);\n      e1.id = edge.id();\n    }\n  }\n\n  var getPositions = function getPositions(ele, i) {\n    if (typeof ele === \"number\") {\n      ele = i;\n    }\n    var theId = ele.data('id');\n    var lNode = self.idToLNode[theId];\n\n    return {\n      x: lNode.getRect().getCenterX(),\n      y: lNode.getRect().getCenterY()\n    };\n  };\n\n  /*\n   * Reposition nodes in iterations animatedly\n   */\n  var iterateAnimated = function iterateAnimated() {\n    // Thigs to perform after nodes are repositioned on screen\n    var afterReposition = function afterReposition() {\n      if (options.fit) {\n        options.cy.fit(options.eles, options.padding);\n      }\n\n      if (!ready) {\n        ready = true;\n        self.cy.one('layoutready', options.ready);\n        self.cy.trigger({ type: 'layoutready', layout: self });\n      }\n    };\n\n    var ticksPerFrame = self.options.refresh;\n    var isDone;\n\n    for (var i = 0; i < ticksPerFrame && !isDone; i++) {\n      isDone = self.stopped || self.layout.tick();\n    }\n\n    // If layout is done\n    if (isDone) {\n      // If the layout is not a sublayout and it is successful perform post layout.\n      if (layout.checkLayoutSuccess() && !layout.isSubLayout) {\n        layout.doPostLayout();\n      }\n\n      // If layout has a tilingPostLayout function property call it.\n      if (layout.tilingPostLayout) {\n        layout.tilingPostLayout();\n      }\n\n      layout.isLayoutFinished = true;\n\n      self.options.eles.nodes().positions(getPositions);\n\n      afterReposition();\n\n      // trigger layoutstop when the layout stops (e.g. finishes)\n      self.cy.one('layoutstop', self.options.stop);\n      self.cy.trigger({ type: 'layoutstop', layout: self });\n\n      if (frameId) {\n        cancelAnimationFrame(frameId);\n      }\n\n      ready = false;\n      return;\n    }\n\n    var animationData = self.layout.getPositionsData(); // Get positions of layout nodes note that all nodes may not be layout nodes because of tiling\n\n    // Position nodes, for the nodes whose id does not included in data (because they are removed from their parents and included in dummy compounds)\n    // use position of their ancestors or dummy ancestors\n    options.eles.nodes().positions(function (ele, i) {\n      if (typeof ele === \"number\") {\n        ele = i;\n      }\n      // If ele is a compound node, then its position will be defined by its children\n      if (!ele.isParent()) {\n        var theId = ele.id();\n        var pNode = animationData[theId];\n        var temp = ele;\n        // If pNode is undefined search until finding position data of its first ancestor (It may be dummy as well)\n        while (pNode == null) {\n          pNode = animationData[temp.data('parent')] || animationData['DummyCompound_' + temp.data('parent')];\n          animationData[theId] = pNode;\n          temp = temp.parent()[0];\n          if (temp == undefined) {\n            break;\n          }\n        }\n        if (pNode != null) {\n          return {\n            x: pNode.x,\n            y: pNode.y\n          };\n        } else {\n          return {\n            x: ele.position('x'),\n            y: ele.position('y')\n          };\n        }\n      }\n    });\n\n    afterReposition();\n\n    frameId = requestAnimationFrame(iterateAnimated);\n  };\n\n  /*\n  * Listen 'layoutstarted' event and start animated iteration if animate option is 'during'\n  */\n  layout.addListener('layoutstarted', function () {\n    if (self.options.animate === 'during') {\n      frameId = requestAnimationFrame(iterateAnimated);\n    }\n  });\n\n  layout.runLayout(); // Run cose layout\n\n  /*\n   * If animate option is not 'during' ('end' or false) perform these here (If it is 'during' similar things are already performed)\n   */\n  if (this.options.animate !== \"during\") {\n    self.options.eles.nodes().not(\":parent\").layoutPositions(self, self.options, getPositions); // Use layout positions to reposition the nodes it considers the options parameter\n    ready = false;\n  }\n\n  return this; // chaining\n};\n\n//Get the top most ones of a list of nodes\n_CoSELayout.prototype.getTopMostNodes = function (nodes) {\n  var nodesMap = {};\n  for (var i = 0; i < nodes.length; i++) {\n    nodesMap[nodes[i].id()] = true;\n  }\n  var roots = nodes.filter(function (ele, i) {\n    if (typeof ele === \"number\") {\n      ele = i;\n    }\n    var parent = ele.parent()[0];\n    while (parent != null) {\n      if (nodesMap[parent.id()]) {\n        return false;\n      }\n      parent = parent.parent()[0];\n    }\n    return true;\n  });\n\n  return roots;\n};\n\n_CoSELayout.prototype.processChildrenList = function (parent, children, layout) {\n  var size = children.length;\n  for (var i = 0; i < size; i++) {\n    var theChild = children[i];\n    var children_of_children = theChild.children();\n    var theNode;\n\n    var dimensions = theChild.layoutDimensions({\n      nodeDimensionsIncludeLabels: this.options.nodeDimensionsIncludeLabels\n    });\n\n    if (theChild.outerWidth() != null && theChild.outerHeight() != null) {\n      theNode = parent.add(new CoSENode(layout.graphManager, new PointD(theChild.position('x') - dimensions.w / 2, theChild.position('y') - dimensions.h / 2), new DimensionD(parseFloat(dimensions.w), parseFloat(dimensions.h))));\n    } else {\n      theNode = parent.add(new CoSENode(this.graphManager));\n    }\n    // Attach id to the layout node\n    theNode.id = theChild.data(\"id\");\n    // Attach the paddings of cy node to layout node\n    theNode.paddingLeft = parseInt(theChild.css('padding'));\n    theNode.paddingTop = parseInt(theChild.css('padding'));\n    theNode.paddingRight = parseInt(theChild.css('padding'));\n    theNode.paddingBottom = parseInt(theChild.css('padding'));\n\n    //Attach the label properties to compound if labels will be included in node dimensions  \n    if (this.options.nodeDimensionsIncludeLabels) {\n      if (theChild.isParent()) {\n        var labelWidth = theChild.boundingBox({ includeLabels: true, includeNodes: false }).w;\n        var labelHeight = theChild.boundingBox({ includeLabels: true, includeNodes: false }).h;\n        var labelPos = theChild.css(\"text-halign\");\n        theNode.labelWidth = labelWidth;\n        theNode.labelHeight = labelHeight;\n        theNode.labelPos = 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package/dist/visualization.es11.js

@@ -1,17 +1,17 @@
 import { jsx as n, jsxs as C, Fragment as z } from "react/jsx-runtime";
 import { useRef as E, useMemo as g, useImperativeHandle as J } from "react";
-import { getTextHeight as O } from "./visualization.es39.js";
-import K from "./visualization.es40.js";
-import { downloadSVGAsPNG as Q, downloadAsSVG as U, getAnimationProps as Z } from "./visualization.es24.js";
+import { getTextHeight as O } from "./visualization.es27.js";
+import K from "./visualization.es28.js";
+import { downloadSVGAsPNG as Q, downloadAsSVG as U, getAnimationProps as Z } from "./visualization.es29.js";
 import { useResponsiveParentSize as _ } from "./visualization.es18.js";
-import R from "./visualization.es27.js";
-import T from "./visualization.es28.js";
-import H from "./visualization.es41.js";
+import R from "./visualization.es23.js";
+import T from "./visualization.es22.js";
+import H from "./visualization.es30.js";
 import { ResponsiveContainer as p } from "./visualization.es14.js";
-import tt from "./visualization.es29.js";
-import { motion as et } from "./visualization.es42.js";
-import N from "./visualization.es38.js";
-import X from "./visualization.es37.js";
+import tt from "./visualization.es31.js";
+import { motion as et } from "./visualization.es32.js";
+import N from "./visualization.es33.js";
+import X from "./visualization.es34.js";
 const xt = (t) => {
   const {
     parentRef: F,