@weng-lab/visualization 2.4.0-beta.5 → 2.4.0-beta.6

package/dist/visualization.es104.js

@@ -1,61 +1,79 @@
-import { jsx as l, jsxs as _ } from "react/jsx-runtime";
-import { c as k } from "react/compiler-runtime";
-import { Add as y, Remove as C, SettingsBackupRestore as Z, Timeline as z } from "@mui/icons-material";
-import { Tooltip as b, IconButton as g } from "@mui/material";
-const T = (u) => {
-  const e = k(22), {
-    scaleZoom: t,
-    resetZoom: x,
-    toggleBranchLength: S
-  } = u;
-  let m;
-  e[0] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (m = {
-    position: "absolute",
-    margin: "4px",
-    display: "flex",
-    flexDirection: "column",
-    alignItems: "flex-start",
-    background: "rgba(255, 255, 255, 0.6)",
-    backdropFilter: "blur(2px)",
-    WebkitBackdropFilter: "blur(2px)",
-    border: "1px solid rgba(255, 255, 255, 0.3)",
-    boxShadow: "0 2px 8px rgba(0, 0, 0, 0.1)"
-  }, e[0] = m) : m = e[0];
+import { jsx as l, jsxs as F, Fragment as B } from "react/jsx-runtime";
+import { c as D } from "react/compiler-runtime";
+import { useId as E } from "react";
+import J from "./visualization.es30.js";
+import K from "./visualization.es31.js";
+const U = (M) => {
+  const e = D(49), {
+    backgroundGradient: y,
+    boundedHeight: t,
+    barLeft: W,
+    marginTop: _
+  } = M, w = E();
+  let p;
+  if (e[0] !== w) {
+    let G;
+    e[2] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (G = /:/g, e[2] = G) : G = e[2], p = w.replace(G, ""), e[0] = w, e[1] = p;
+  } else
+    p = e[1];
+  const g = `sg-${p}`;
+  let b;
+  e[3] !== y.colorScale ? (b = y.colorScale ?? ["red", "white", "blue"], e[3] = y.colorScale, e[4] = b) : b = e[4];
+  const [C, $, j] = b, {
+    label: k,
+    minLabel: S,
+    midLabel: q,
+    maxLabel: u
+  } = y.legend;
   let o;
-  e[1] !== t ? (o = () => t({
-    scaleX: 1.2,
-    scaleY: 1.2
-  }), e[1] = t, e[2] = o) : o = e[2];
-  let a;
-  e[3] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (a = /* @__PURE__ */ l(y, { fontSize: "small" }), e[3] = a) : a = e[3];
+  e[5] !== j ? (o = /* @__PURE__ */ l("stop", { offset: "0%", stopColor: j }), e[5] = j, e[6] = o) : o = e[6];
   let i;
-  e[4] !== o ? (i = /* @__PURE__ */ l(b, { title: "Zoom In", placement: "right", children: /* @__PURE__ */ l(g, { onClick: o, children: a }) }), e[4] = o, e[5] = i) : i = e[5];
+  e[7] !== $ ? (i = /* @__PURE__ */ l("stop", { offset: "50%", stopColor: $ }), e[7] = $, e[8] = i) : i = e[8];
   let r;
-  e[6] !== t ? (r = () => t({
-    scaleX: 0.8333333333333334,
-    scaleY: 0.8333333333333334
-  }), e[6] = t, e[7] = r) : r = e[7];
-  let f;
-  e[8] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (f = /* @__PURE__ */ l(C, { fontSize: "small" }), e[8] = f) : f = e[8];
+  e[9] !== C ? (r = /* @__PURE__ */ l("stop", { offset: "100%", stopColor: C }), e[9] = C, e[10] = r) : r = e[10];
+  let s;
+  e[11] !== g || e[12] !== o || e[13] !== i || e[14] !== r ? (s = /* @__PURE__ */ l("defs", { children: /* @__PURE__ */ F("linearGradient", { id: g, x1: "0", y1: "0", x2: "0", y2: "1", children: [
+    o,
+    i,
+    r
+  ] }) }), e[11] = g, e[12] = o, e[13] = i, e[14] = r, e[15] = s) : s = e[15];
+  const A = `url(#${g})`;
   let n;
-  e[9] !== r ? (n = /* @__PURE__ */ l(b, { title: "Zoom Out", placement: "right", children: /* @__PURE__ */ l(g, { onClick: r, children: f }) }), e[9] = r, e[10] = n) : n = e[10];
-  let h;
-  e[11] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (h = /* @__PURE__ */ l(Z, { fontSize: "small" }), e[11] = h) : h = e[11];
+  e[16] !== t || e[17] !== A ? (n = /* @__PURE__ */ l("rect", { x: 0, y: 0, width: 16, height: t, fill: A, stroke: "#aaa", strokeWidth: 0.5 }), e[16] = t, e[17] = A, e[18] = n) : n = e[18];
+  let L;
+  e[19] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (L = /* @__PURE__ */ l("line", { x1: 16, x2: 22, y1: 0, y2: 0, stroke: "#555", strokeWidth: 1 }), e[19] = L) : L = e[19];
+  const H = t / 2, I = t / 2;
   let c;
-  e[12] !== x ? (c = /* @__PURE__ */ l(b, { title: "Reset Zoom", placement: "right", children: /* @__PURE__ */ l(g, { onClick: x, children: h }) }), e[12] = x, e[13] = c) : c = e[13];
-  let p;
-  e[14] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (p = /* @__PURE__ */ l(z, { fontSize: "small" }), e[14] = p) : p = e[14];
-  let s;
-  e[15] !== S ? (s = /* @__PURE__ */ l(b, { title: "Toggle Evolutionary Distance", placement: "right", children: /* @__PURE__ */ l(g, { onClick: S, children: p }) }), e[15] = S, e[16] = s) : s = e[16];
+  e[20] !== H || e[21] !== I ? (c = /* @__PURE__ */ l("line", { x1: 16, x2: 22, y1: H, y2: I, stroke: "#555", strokeWidth: 1 }), e[20] = H, e[21] = I, e[22] = c) : c = e[22];
+  let f;
+  e[23] !== t ? (f = /* @__PURE__ */ l("line", { x1: 16, x2: 22, y1: t, y2: t, stroke: "#555", strokeWidth: 1 }), e[23] = t, e[24] = f) : f = e[24];
   let d;
-  return e[17] !== s || e[18] !== i || e[19] !== n || e[20] !== c ? (d = /* @__PURE__ */ _("div", { style: m, children: [
-    i,
+  e[25] !== u ? (d = u && /* @__PURE__ */ l("text", { x: 26, y: 0, dy: "0.35em", fontSize: 10, fill: "#1c1917", children: u }), e[25] = u, e[26] = d) : d = e[26];
+  const T = t / 2, v = q ?? "0";
+  let a;
+  e[27] !== T || e[28] !== v ? (a = /* @__PURE__ */ l("text", { x: 26, y: T, dy: "0.35em", fontSize: 10, fill: "#1c1917", children: v }), e[27] = T, e[28] = v, e[29] = a) : a = e[29];
+  let m;
+  e[30] !== t || e[31] !== S ? (m = S && /* @__PURE__ */ l("text", { x: 26, y: t, dy: "0.35em", fontSize: 10, fill: "#1c1917", children: S }), e[30] = t, e[31] = S, e[32] = m) : m = e[32];
+  let x;
+  e[33] !== t || e[34] !== k ? (x = k && /* @__PURE__ */ l(J, { textAnchor: "middle", verticalAnchor: "end", angle: 90, fontSize: 14, y: t / 2, x: 0, dx: 65, children: k }), e[33] = t, e[34] = k, e[35] = x) : x = e[35];
+  let h;
+  e[36] !== W || e[37] !== _ || e[38] !== c || e[39] !== f || e[40] !== d || e[41] !== a || e[42] !== m || e[43] !== x || e[44] !== n ? (h = /* @__PURE__ */ F(K, { top: _, left: W, children: [
     n,
+    L,
     c,
-    s
-  ] }), e[17] = s, e[18] = i, e[19] = n, e[20] = c, e[21] = d) : d = e[21], d;
+    f,
+    d,
+    a,
+    m,
+    x
+  ] }), e[36] = W, e[37] = _, e[38] = c, e[39] = f, e[40] = d, e[41] = a, e[42] = m, e[43] = x, e[44] = n, e[45] = h) : h = e[45];
+  let z;
+  return e[46] !== h || e[47] !== s ? (z = /* @__PURE__ */ F(B, { children: [
+    s,
+    h
+  ] }), e[46] = h, e[47] = s, e[48] = z) : z = e[48], z;
 };
 export {
-  T as ControlPanel
+  U as default
 };
 //# sourceMappingURL=visualization.es104.js.map

package/dist/visualization.es104.js.map

@@ -1 +1 @@
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package/dist/visualization.es105.js

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-import { c as p } from "react/compiler-runtime";
-import { memo as g } from "react";
-import M from "./visualization.es58.js";
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-    dragMove: s,
-    dragEnd: e,
-    scale: c,
-    isDragging: l
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-      scaleY: 1.5,
-      point: f
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+import { jsx as l, jsxs as R, Fragment as y } from "react/jsx-runtime";
+import { c as f } from "react/compiler-runtime";
+const c = "#666", d = 1, S = [2, 2], H = (h) => {
+  const t = f(11), {
+    position: x,
+    boundedWidth: e,
+    boundedHeight: o
+  } = h, {
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   let i;
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+  let a;
+  return t[8] !== r || t[9] !== i ? (a = /* @__PURE__ */ R(y, { children: [
+    r,
+    i
+  ] }), t[8] = r, t[9] = i, t[10] = a) : a = t[10], a;
+};
 export {
-  D as ZoomSurface
+  S as CROSSHAIR_DASH,
+  c as CROSSHAIR_STROKE,
+  d as CROSSHAIR_STROKE_WIDTH,
+  H as default
 };
 //# sourceMappingURL=visualization.es105.js.map

package/dist/visualization.es105.js.map

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package/dist/visualization.es106.js

@@ -1,21 +1,88 @@
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-import { useBranchLengthTransition as m } from "./visualization.es7.js";
-import { memo as a } from "react";
-import { motion as s } from "./visualization.es42.js";
-const c = a(function({
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-  baseLinkPath: n,
-  color: r,
-  strokeWidth: i,
-  useBranchLengths: t
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-    d: t ? o : n
-  }, transition: {
-    d: m
-  } });
-});
+import { c as q } from "react/compiler-runtime";
+import { useState as w } from "react";
+import { rescaleX as A, rescaleY as B, isPointInLasso as F } from "./visualization.es17.js";
+import G from "./visualization.es238.js";
+const Q = (k) => {
+  const t = q(27), {
+    pointData: S,
+    margin: s,
+    xScale: v,
+    yScale: g,
+    onSelectionChange: M
+  } = k;
+  let r;
+  t[0] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (r = [], t[0] = r) : r = t[0];
+  const [n, c] = w(r);
+  let f;
+  t[1] !== s.left || t[2] !== s.top ? (f = (e) => {
+    if (e?.x === void 0 || e?.y === void 0)
+      return;
+    const o = e.x, l = e.y;
+    c((i) => [...i, [{
+      x: o - s.left,
+      y: l - s.top
+    }]]);
+  }, t[1] = s.left, t[2] = s.top, t[3] = f) : f = t[3];
+  const X = f;
+  let d;
+  t[4] !== s.left || t[5] !== s.top ? (d = (e) => {
+    if (e?.x === void 0 || e?.y === void 0)
+      return;
+    const o = e.x - s.left, l = e.y - s.top;
+    c((i) => {
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+  t[7] !== n || t[8] !== M || t[9] !== S || t[10] !== v || t[11] !== g ? (x = (e) => {
+    const o = n[n.length - 1];
+    if (!o) {
+      c([]);
+      return;
+    }
+    const l = A(v, e.transformMatrix.translateX, e.transformMatrix.scaleX), i = B(g, e.transformMatrix.translateY, e.transformMatrix.scaleY), a = S.filter((p) => F({
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+      y: i(p.y)
+    }, o));
+    M?.(a), c([]);
+  }, t[7] = n, t[8] = M, t[9] = S, t[10] = v, t[11] = g, t[12] = x) : x = t[12];
+  const h = x;
+  let m;
+  t[13] !== Y || t[14] !== X ? (m = {
+    onDragStart: X,
+    onDragMove: Y,
+    resetOnStart: !0
+  }, t[13] = Y, t[14] = X, t[15] = m) : m = t[15];
+  const {
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+    dragStart: j,
+    dragEnd: P,
+    dragMove: T
+  } = G(m), b = E === void 0 ? 0 : E, C = O === void 0 ? 0 : O;
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+  return t[16] !== h || t[17] !== P || t[18] !== T || t[19] !== j || t[20] !== L || t[21] !== u || t[22] !== I || t[23] !== n || t[24] !== b || t[25] !== C ? (y = {
+    lines: n,
+    isDragging: I,
+    x: b,
+    y: C,
+    dx: L,
+    dy: u,
+    dragStart: j,
+    dragMove: T,
+    dragEnd: P,
+    completeSelection: h
+  }, t[16] = h, t[17] = P, t[18] = T, t[19] = j, t[20] = L, t[21] = u, t[22] = I, t[23] = n, t[24] = b, t[25] = C, t[26] = y) : y = t[26], y;
+};
 export {
-  c as TreeLink
+  Q as useDragSelection
 };
 //# sourceMappingURL=visualization.es106.js.map

package/dist/visualization.es106.js.map

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package/dist/visualization.es107.js

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-import { useBranchLengthTransition as m } from "./visualization.es7.js";
-import { memo as s } from "react";
-import { motion as a } from "./visualization.es42.js";
-const k = s(function({
-  useBranchLengths: n,
-  color: i,
-  baseLeafLinkExtension: o,
-  scaledLeafLinkExtension: t,
-  strokeWidth: r
-}) {
-  return /* @__PURE__ */ e(a.line, { strokeWidth: r, initial: !1, animate: n ? t : o, stroke: i, transition: m });
-});
+import d from "./visualization.es127.js";
+import { line as u } from "./visualization.es53.js";
+import { jsx as t, Fragment as h } from "react/jsx-runtime";
+function N(n) {
+  let {
+    children: e,
+    data: a = [],
+    x: i,
+    y: l,
+    fill: o = "transparent",
+    className: s,
+    curve: f,
+    innerRef: p,
+    defined: c = () => !0,
+    ...m
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+    defined: c,
+    curve: f
+  });
+  return e ? /* @__PURE__ */ t(h, {
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+    })
+  }) : /* @__PURE__ */ t("path", {
+    ref: p,
+    className: d("visx-linepath", s),
+    d: r(a) || "",
+    fill: o,
+    strokeLinecap: "round",
+    ...m
+  });
+}
 export {
-  k as LeafLinkExtension
+  N as default
 };
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package/dist/visualization.es107.js.map

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-{"version":3,"file":"visualization.es107.js","sources":["../src/components/PhyloTree/LeafLinkExtension.tsx"],"sourcesContent":["import { motion } from \"framer-motion\";\nimport { useBranchLengthTransition } from \"./PhyloTree\";\nimport { memo } from \"react\";\nimport { TreeNode } from \"./types\";\n\n\nexport type LeafLinkExtensionProps = {\n  baseLeafLinkExtension: TreeNode[\"baseLeafLinkExtension\"]\n  scaledLeafLinkExtension: TreeNode[\"scaledLeafLinkExtension\"]\n  color: TreeNode[\"color\"];\n  strokeWidth: TreeNode[\"linkStrokeWidth\"]\n  useBranchLengths: boolean\n};\n\nexport const LeafLinkExtension = memo(function LinkExtension({\n  useBranchLengths,\n  color,\n  baseLeafLinkExtension,\n  scaledLeafLinkExtension,\n  strokeWidth\n}: LeafLinkExtensionProps) {\n\n  return (\n    <motion.line\n      strokeWidth={strokeWidth}\n      initial={false}\n      animate={useBranchLengths ? scaledLeafLinkExtension : baseLeafLinkExtension}\n      stroke={color}\n      transition={useBranchLengthTransition}\n    />\n  );\n});\n"],"names":["LeafLinkExtension","memo","useBranchLengths","color","baseLeafLinkExtension","scaledLeafLinkExtension","strokeWidth","jsx","motion","useBranchLengthTransition"],"mappings":";;;;AAcO,MAAMA,IAAoBC,EAAK,SAAuB;AAAA,EAC3DC,kBAAAA;AAAAA,EACAC,OAAAA;AAAAA,EACAC,uBAAAA;AAAAA,EACAC,yBAAAA;AAAAA,EACAC,aAAAA;AACsB,GAAG;AAEzB,SACE,gBAAAC,EAACC,EAAO,MAAP,EACC,aAAAF,GACA,SAAS,IACT,SAASJ,IAAmBG,IAA0BD,GACtD,QAAQD,GACR,YAAYM,GAA0B;AAG5C,CAAC;"}
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package/dist/visualization.es108.js

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-import { jsx as u, jsxs as k } from "react/jsx-runtime";
-import { c as g } from "react/compiler-runtime";
-import { memo as j } from "react";
-import O from "./visualization.es29.js";
-const F = j(function(L) {
-  const t = g(16), {
-    nodeX: N,
-    color: e,
-    baseNodeX: f,
-    baseNodeY: i,
-    label: a,
-    fontSize: n,
-    fontFamily: c,
-    strokeWidth: m
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-  return t[11] !== f || t[12] !== i || t[13] !== o || t[14] !== r ? (l = /* @__PURE__ */ k(O, { top: i, left: f, children: [
-    o,
-    r
-  ] }), t[11] = f, t[12] = i, t[13] = o, t[14] = r, t[15] = l) : l = t[15], l;
-});
+import G from "./visualization.es127.js";
+import { jsx as o, Fragment as O } from "react/jsx-runtime";
+import P from "./visualization.es31.js";
+function k(s) {
+  let {
+    className: h,
+    top: m,
+    left: n,
+    data: u = [],
+    binWidth: f = 6,
+    binHeight: x = 6,
+    x0: d = 0,
+    gap: a = 1,
+    xScale: y,
+    yScale: g,
+    colorScale: S = () => {
+    },
+    opacityScale: w = () => 1,
+    bins: N = (e) => e?.bins,
+    // eslint-disable-line @typescript-eslint/no-explicit-any
+    count: v = (e) => e?.count,
+    // eslint-disable-line @typescript-eslint/no-explicit-any
+    children: r,
+    ...H
+  } = s;
+  const $ = f - a, j = x - a, l = u.map((e, t) => {
+    const F = y(t);
+    return N(e).map((i, p) => {
+      const c = v(i);
+      return {
+        bin: i,
+        row: p,
+        column: t,
+        datum: e,
+        width: $,
+        height: j,
+        gap: a,
+        count: c,
+        x: F + d,
+        y: g(p) + a,
+        color: S(c),
+        opacity: w(c)
+      };
+    });
+  });
+  return r ? /* @__PURE__ */ o(O, {
+    children: r(l)
+  }) : /* @__PURE__ */ o(P, {
+    className: "visx-heatmap-rects",
+    top: m,
+    left: n,
+    children: l.map((e) => e.map((t) => /* @__PURE__ */ o("rect", {
+      className: G("visx-heatmap-rect", h),
+      width: t.width,
+      height: t.height,
+      x: t.x,
+      y: t.y,
+      fill: t.color,
+      fillOpacity: t.opacity,
+      ...H
+    }, `heatmap-tile-rect-${t.row}-${t.column}`)))
+  });
+}
 export {
-  F as LeafNodeLabel
+  k as default
 };
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