@weng-lab/ui-components 3.1.0 → 3.1.1

package/dist/ui-components.es66.js

@@ -1,248 +1,146 @@
-const d = `
-  query suggestions($assembly: String!, $snpid: String!, $limit: Int) {
-    snpAutocompleteQuery(assembly: $assembly, snpid: $snpid, limit: $limit) {
-      id
-      coordinates {
-        chromosome
-        start
-        end
-      }
-    }
-  }
-`, u = `
-  query Genes(
-      $name_prefix: [String!]
-      $idprefix: [String!]
-      $limit: Int
-      $assembly: String!
-      $version: Int
-  ) {
-      gene(
-          name_prefix: $name_prefix
-          idprefix: $idprefix
-          limit: $limit
-          assembly: $assembly
-          orderby: "name"
-          version: $version
-      ) {
-          id
-          name
-          coordinates {
-              chromosome
-              start
-              end
-          }
-      }
+import c from "./ui-components.es166.js";
+import b from "./ui-components.es230.js";
+function l(e, t = 0, n = 1) {
+  return process.env.NODE_ENV !== "production" && (e < t || e > n) && console.error(`MUI: The value provided ${e} is out of range [${t}, ${n}].`), b(e, t, n);
+}
+function v(e) {
+  e = e.slice(1);
+  const t = new RegExp(`.{1,${e.length >= 6 ? 2 : 1}}`, "g");
+  let n = e.match(t);
+  return n && n[0].length === 1 && (n = n.map((r) => r + r)), process.env.NODE_ENV !== "production" && e.length !== e.trim().length && console.error(`MUI: The color: "${e}" is invalid. Make sure the color input doesn't contain leading/trailing space.`), n ? `rgb${n.length === 4 ? "a" : ""}(${n.map((r, s) => s < 3 ? parseInt(r, 16) : Math.round(parseInt(r, 16) / 255 * 1e3) / 1e3).join(", ")})` : "";
+}
+function a(e) {
+  if (e.type)
+    return e;
+  if (e.charAt(0) === "#")
+    return a(v(e));
+  const t = e.indexOf("("), n = e.substring(0, t);
+  if (!["rgb", "rgba", "hsl", "hsla", "color"].includes(n))
+    throw new Error(process.env.NODE_ENV !== "production" ? `MUI: Unsupported \`${e}\` color.
+The following formats are supported: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color().` : c(9, e));
+  let r = e.substring(t + 1, e.length - 1), s;
+  if (n === "color") {
+    if (r = r.split(" "), s = r.shift(), r.length === 4 && r[3].charAt(0) === "/" && (r[3] = r[3].slice(1)), !["srgb", "display-p3", "a98-rgb", "prophoto-rgb", "rec-2020"].includes(s))
+      throw new Error(process.env.NODE_ENV !== "production" ? `MUI: unsupported \`${s}\` color space.
+The following color spaces are supported: srgb, display-p3, a98-rgb, prophoto-rgb, rec-2020.` : c(10, s));
+  } else
+    r = r.split(",");
+  return r = r.map((u) => parseFloat(u)), {
+    type: n,
+    values: r,
+    colorSpace: s
+  };
+}
+const E = (e) => {
+  const t = a(e);
+  return t.values.slice(0, 3).map((n, r) => t.type.includes("hsl") && r !== 0 ? `${n}%` : n).join(" ");
+}, O = (e, t) => {
+  try {
+    return E(e);
+  } catch {
+    return t && process.env.NODE_ENV !== "production" && console.warn(t), e;
   }
-`, _ = `
-  query iCREQuery($accession_prefix: [String!], $limit: Int) {
-      iCREQuery(accession_prefix: $accession_prefix, limit: $limit) {
-          rdhs
-          accession
-          celltypes
-          coordinates {
-              start
-              end
-              chromosome
-          }
-      }
+};
+function p(e) {
+  const {
+    type: t,
+    colorSpace: n
+  } = e;
+  let {
+    values: r
+  } = e;
+  return t.includes("rgb") ? r = r.map((s, u) => u < 3 ? parseInt(s, 10) : s) : t.includes("hsl") && (r[1] = `${r[1]}%`, r[2] = `${r[2]}%`), t.includes("color") ? r = `${n} ${r.join(" ")}` : r = `${r.join(", ")}`, `${t}(${r})`;
+}
+function $(e) {
+  e = a(e);
+  const {
+    values: t
+  } = e, n = t[0], r = t[1] / 100, s = t[2] / 100, u = r * Math.min(s, 1 - s), i = (y, d = (y + n / 30) % 12) => s - u * Math.max(Math.min(d - 3, 9 - d, 1), -1);
+  let o = "rgb";
+  const f = [Math.round(i(0) * 255), Math.round(i(8) * 255), Math.round(i(4) * 255)];
+  return e.type === "hsla" && (o += "a", f.push(t[3])), p({
+    type: o,
+    values: f
+  });
+}
+function h(e) {
+  e = a(e);
+  let t = e.type === "hsl" || e.type === "hsla" ? a($(e)).values : e.values;
+  return t = t.map((n) => (e.type !== "color" && (n /= 255), n <= 0.03928 ? n / 12.92 : ((n + 0.055) / 1.055) ** 2.4)), Number((0.2126 * t[0] + 0.7152 * t[1] + 0.0722 * t[2]).toFixed(3));
+}
+function w(e, t) {
+  const n = h(e), r = h(t);
+  return (Math.max(n, r) + 0.05) / (Math.min(n, r) + 0.05);
+}
+function N(e, t) {
+  return e = a(e), t = l(t), (e.type === "rgb" || e.type === "hsl") && (e.type += "a"), e.type === "color" ? e.values[3] = `/${t}` : e.values[3] = t, p(e);
+}
+function V(e, t, n) {
+  try {
+    return N(e, t);
+  } catch {
+    return n && process.env.NODE_ENV !== "production" && console.warn(n), e;
   }
-`, h = `
-  query cCREAutocompleteQuery(
-    $accession: [String!]
-    $accession_prefix: [String!]
-    $assembly: String!
-    $includeiCREs: Boolean
-    $limit: Int
-  ) {
-    cCREAutocompleteQuery(
-      includeiCREs: $includeiCREs
-      assembly: $assembly
-      limit: $limit
-      accession: $accession
-      accession_prefix: $accession_prefix
-    ) {
-      accession
-      isiCRE
-      coordinates {
-        chromosome
-        start
-        end
-      }
-    }
+}
+function g(e, t) {
+  if (e = a(e), t = l(t), e.type.includes("hsl"))
+    e.values[2] *= 1 - t;
+  else if (e.type.includes("rgb") || e.type.includes("color"))
+    for (let n = 0; n < 3; n += 1)
+      e.values[n] *= 1 - t;
+  return p(e);
+}
+function C(e, t, n) {
+  try {
+    return g(e, t);
+  } catch {
+    return n && process.env.NODE_ENV !== "production" && console.warn(n), e;
   }
-`, C = `
-  query getv2v3CcreMapping($accessions: [String], $assembly: String!) {
-    ccreMappings: getv2cCREMappings(
-      v2_accession: $accessions
-      assembly: $assembly
-    ) {
-      input: v2_accession
-      input_latest_previous_version: ccre_version
-      input_region: v2_region
-      v4_match_or_intersecting: v4_accession
-      v4_region
-    }
+}
+function m(e, t) {
+  if (e = a(e), t = l(t), e.type.includes("hsl"))
+    e.values[2] += (100 - e.values[2]) * t;
+  else if (e.type.includes("rgb"))
+    for (let n = 0; n < 3; n += 1)
+      e.values[n] += (255 - e.values[n]) * t;
+  else if (e.type.includes("color"))
+    for (let n = 0; n < 3; n += 1)
+      e.values[n] += (1 - e.values[n]) * t;
+  return p(e);
+}
+function I(e, t, n) {
+  try {
+    return m(e, t);
+  } catch {
+    return n && process.env.NODE_ENV !== "production" && console.warn(n), e;
   }
-`, g = `
-query getGWASStudyMetadata($limit: Int, $studyname_prefix: [String]){
-    getGWASStudiesMetadata(limit: $limit, studyname_prefix: $studyname_prefix )
-    {
-        studyid
-        author
-        disease_trait
-        has_enrichment_info
-        population
-        parent_terms
-        total_ld_blocks
-        ld_blocks_overlapping_ccres
-        overlapping_ccres
-    }
 }
-`, b = async (e, s, i, t) => (await fetch(i, {
-  method: "POST",
-  body: JSON.stringify({
-    query: _,
-    variables: {
-      accession_prefix: [e],
-      limit: s
-    }
-  }),
-  headers: {
-    "Content-Type": "application/json"
-  },
-  signal: t
-})).json(), v = async (e, s, i, t, n, p) => {
-  const a = e.length === 12;
-  return (await fetch(n, {
-    method: "POST",
-    body: JSON.stringify({
-      query: h,
-      variables: {
-        ...a ? {
-          accession: [e.toUpperCase()]
-        } : {
-          accession_prefix: [e]
-        },
-        assembly: s,
-        limit: i,
-        includeiCREs: t
-      }
-    }),
-    headers: {
-      "Content-Type": "application/json"
-    },
-    signal: p
-  })).json();
-}, R = async (e, s, i, t) => (await fetch(i, {
-  method: "POST",
-  body: JSON.stringify({
-    query: C,
-    variables: {
-      accessions: [e],
-      assembly: s
-    }
-  }),
-  headers: {
-    "Content-Type": "application/json"
-  },
-  signal: t
-})).json(), x = async (e, s, i, t, n, p) => {
-  let a = t ? typeof t == "number" ? [t] : t : [s === "GRCh38" ? 40 : 25];
-  a = a.sort((o, r) => r - o);
-  const m = await Promise.all(a.map((o) => fetch(n, {
-    method: "POST",
-    body: JSON.stringify({
-      query: u,
-      variables: {
-        assembly: s.toLowerCase(),
-        ...s.toLowerCase() === "mm10" && e.toUpperCase().startsWith("ENSMUSG") || s.toLowerCase() === "grch38" && e.toUpperCase().startsWith("ENSG") ? {
-          idprefix: e.split(".")[0]
-        } : {
-          name_prefix: e
-        },
-        version: o,
-        limit: i
-      }
-    }),
-    headers: {
-      "Content-Type": "application/json"
-    },
-    signal: p
-  }).then((r) => r.json()))), l = /* @__PURE__ */ new Map();
-  return m.forEach((o, r) => {
-    (o.data.gene || []).forEach((c) => {
-      l.has(c.name) ? l.get(c.name).versions.push({
-        id: c.id,
-        version: a[r]
-      }) : l.set(c.name, {
-        gene: c,
-        versions: [{
-          id: c.id,
-          version: a[r]
-        }]
-      });
-    });
-  }), await Promise.all(Array.from(l.values()).map(async ({
-    gene: o,
-    versions: r
-  }) => {
-    const y = await E(o.name);
-    return {
-      ...o,
-      description: `${f(y || o.name)}`,
-      versions: r
-    };
-  }));
-}, f = (e) => e.split(" ").map((s) => s.charAt(0).toUpperCase() + s.slice(1)).join(" ");
-async function E(e) {
+function M(e, t = 0.15) {
+  return h(e) > 0.5 ? g(e, t) : m(e, t);
+}
+function T(e, t, n) {
   try {
-    const i = await (await fetch("https://clinicaltables.nlm.nih.gov/api/ncbi_genes/v3/search?authenticity_token=&terms=" + e.toUpperCase())).json(), t = i[3] && i[3].filter((n) => n[3] === e.toUpperCase());
-    return t && t.length >= 1 ? t[0][4] : null;
+    return M(e, t);
   } catch {
-    return null;
+    return e;
   }
 }
-const T = async (e, s, i, t, n) => (await fetch(t, {
-  method: "POST",
-  body: JSON.stringify({
-    query: d,
-    variables: {
-      assembly: s.toLowerCase(),
-      snpid: e,
-      limit: i
-    }
-  }),
-  headers: {
-    "Content-Type": "application/json"
-  },
-  signal: n
-})).json(), O = async (e, s, i, t) => (await fetch(i, {
-  method: "POST",
-  body: JSON.stringify({
-    query: g,
-    variables: {
-      studyname_prefix: [e],
-      limit: s
-    }
-  }),
-  headers: {
-    "Content-Type": "application/json"
-  },
-  signal: t
-})).json();
 export {
-  h as CCRE_AUTOCOMPLETE_QUERY,
-  u as GENE_AUTOCOMPLETE_QUERY,
-  g as GWAS_AUTOCOMPLETE_QUERY,
-  _ as ICRE_AUTOCOMPLETE_QUERY,
-  C as LEGACY_CCRE_QUERY,
-  d as SNP_AUTOCOMPLETE_QUERY,
-  v as getCCREs,
-  x as getGenes,
-  b as getICREs,
-  R as getLegacyCCREs,
-  T as getSNPs,
-  O as getStudys
+  N as alpha,
+  E as colorChannel,
+  g as darken,
+  a as decomposeColor,
+  M as emphasize,
+  w as getContrastRatio,
+  h as getLuminance,
+  v as hexToRgb,
+  $ as hslToRgb,
+  m as lighten,
+  V as private_safeAlpha,
+  O as private_safeColorChannel,
+  C as private_safeDarken,
+  T as private_safeEmphasize,
+  I as private_safeLighten,
+  p as recomposeColor
 };
 //# sourceMappingURL=ui-components.es66.js.map

package/dist/ui-components.es66.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es66.js","sources":["../src/components/GenomeSearch/queries.ts"],"sourcesContent":["import { GenomeSearchProps } from \"./types\";\n\nexport const SNP_AUTOCOMPLETE_QUERY = `\n  query suggestions($assembly: String!, $snpid: String!, $limit: Int) {\n    snpAutocompleteQuery(assembly: $assembly, snpid: $snpid, limit: $limit) {\n      id\n      coordinates {\n        chromosome\n        start\n        end\n      }\n    }\n  }\n`;\n\nexport const GENE_AUTOCOMPLETE_QUERY = `\n  query Genes(\n      $name_prefix: [String!]\n      $idprefix: [String!]\n      $limit: Int\n      $assembly: String!\n      $version: Int\n  ) {\n      gene(\n          name_prefix: $name_prefix\n          idprefix: $idprefix\n          limit: $limit\n          assembly: $assembly\n          orderby: \"name\"\n          version: $version\n      ) {\n          id\n          name\n          coordinates {\n              chromosome\n              start\n              end\n          }\n      }\n  }\n`;\n\nexport const ICRE_AUTOCOMPLETE_QUERY = `\n  query iCREQuery($accession_prefix: [String!], $limit: Int) {\n      iCREQuery(accession_prefix: $accession_prefix, limit: $limit) {\n          rdhs\n          accession\n          celltypes\n          coordinates {\n              start\n              end\n              chromosome\n          }\n      }\n  }\n`;\n\nexport const CCRE_AUTOCOMPLETE_QUERY = `\n  query cCREAutocompleteQuery(\n    $accession: [String!]\n    $accession_prefix: [String!]\n    $assembly: String!\n    $includeiCREs: Boolean\n    $limit: Int\n  ) {\n    cCREAutocompleteQuery(\n      includeiCREs: $includeiCREs\n      assembly: $assembly\n      limit: $limit\n      accession: $accession\n      accession_prefix: $accession_prefix\n    ) {\n      accession\n      isiCRE\n      coordinates {\n        chromosome\n        start\n        end\n      }\n    }\n  }\n`;\n\nexport const LEGACY_CCRE_QUERY = `\n  query getv2v3CcreMapping($accessions: [String], $assembly: String!) {\n    ccreMappings: getv2cCREMappings(\n      v2_accession: $accessions\n      assembly: $assembly\n    ) {\n      input: v2_accession\n      input_latest_previous_version: ccre_version\n      input_region: v2_region\n      v4_match_or_intersecting: v4_accession\n      v4_region\n    }\n  }\n`\n\nexport const GWAS_AUTOCOMPLETE_QUERY = `\nquery getGWASStudyMetadata($limit: Int, $studyname_prefix: [String]){\n    getGWASStudiesMetadata(limit: $limit, studyname_prefix: $studyname_prefix )\n    {\n        studyid\n        author\n        disease_trait\n        has_enrichment_info\n        population\n        parent_terms\n        total_ld_blocks\n        ld_blocks_overlapping_ccres\n        overlapping_ccres\n    }\n}\n`;\n\nexport const getICREs = async (value: string, limit: number, url: string, signal?: AbortSignal) => {\n  const response = await fetch(url, {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: ICRE_AUTOCOMPLETE_QUERY,\n      variables: {\n        accession_prefix: [value],\n        limit: limit,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n  return response.json();\n};\n\nexport const getCCREs = async (value: string, assembly: GenomeSearchProps[\"assembly\"], limit: number, showiCREFlag: boolean, url: string, signal?: AbortSignal) => {\n  const isExactAccession = value.length === 12;\n  const response = await fetch(url, {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: CCRE_AUTOCOMPLETE_QUERY,\n      variables: {\n        ...(isExactAccession\n          ? { accession: [value.toUpperCase()] }\n          : { accession_prefix: [value] }),\n        assembly,\n        limit,\n        includeiCREs: showiCREFlag,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n  return response.json();\n};\n\nexport const getLegacyCCREs = async (value: string, assembly: GenomeSearchProps[\"assembly\"], url: string, signal?: AbortSignal) => {\n  const response = await fetch(url, {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: LEGACY_CCRE_QUERY,\n      variables: {\n        accessions: [value],\n        assembly,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n  return response.json();\n};\n\nexport const getGenes = async (\n  value: string,\n  assembly: GenomeSearchProps[\"assembly\"],\n  limit: number,\n  geneVersions: GenomeSearchProps[\"geneVersion\"],\n  url: string,\n  signal?: AbortSignal\n) => {\n  let versions = geneVersions\n    ? typeof geneVersions === \"number\"\n      ? [geneVersions]\n      : geneVersions\n    : [assembly === \"GRCh38\" ? 40 : 25];\n\n  // sort versions from high to low (prioritize newest versions in map)\n  versions = versions.sort((a, b) => b - a);\n\n  // Fetch genes for all versions\n  const versionResults = await Promise.all(\n  versions.map((version) =>\n    fetch(url, {\n      method: \"POST\",\n      body: JSON.stringify({\n        query: GENE_AUTOCOMPLETE_QUERY,\n        variables: {\n          assembly: assembly.toLowerCase(),\n          ...(\n            (\n              (assembly.toLowerCase() === \"mm10\" && value.toUpperCase().startsWith(\"ENSMUSG\")) ||\n              (assembly.toLowerCase() === \"grch38\" && value.toUpperCase().startsWith(\"ENSG\"))\n            )\n              ? { idprefix: value.split(\".\")[0] }\n              : { name_prefix: value }\n          ),\n          version: version,\n          limit: limit,\n        },\n      }),\n      headers: { \"Content-Type\": \"application/json\" },\n      signal,\n    }).then((res) => res.json())\n  )\n);\n\n  // Combine and deduplicate results\n  const geneMap = new Map<string, { gene: any; versions: { id: string; version: number }[] }>();\n\n  versionResults.forEach((result, idx) => {\n    const genes = result.data.gene || [];\n    genes.forEach((gene: any) => {\n      if (!geneMap.has(gene.name)) {\n        geneMap.set(gene.name, { gene, versions: [{ id: gene.id, version: versions[idx] }] });\n      } else {\n        // if gene already exists, just add legacy versions to list.\n        const existing = geneMap.get(gene.name)!;\n        existing.versions.push({ id: gene.id, version: versions[idx] });\n      }\n    });\n  });\n\n  // Convert map to array and fetch descriptions\n  const out = await Promise.all(\n    Array.from(geneMap.values()).map(async ({ gene, versions }) => {\n      const description = await getDescription(gene.name);\n      return {\n        ...gene,\n        description: `${toTitleCase(description || gene.name)}`,\n        versions,\n      };\n    })\n  );\n\n  return out;\n};\nconst toTitleCase = (str: string) =>\n  str\n    .split(\" \")\n    .map((word) => word.charAt(0).toUpperCase() + word.slice(1))\n    .join(\" \");\n\nasync function getDescription(name: string): Promise<string | null> {\n  try {\n    const response = await fetch(\n      \"https://clinicaltables.nlm.nih.gov/api/ncbi_genes/v3/search?authenticity_token=&terms=\" + name.toUpperCase()\n    );\n    const data = await response.json();\n    const matches = data[3] && data[3].filter((x: string[]) => x[3] === name.toUpperCase());\n    return matches && matches.length >= 1 ? matches[0][4] : null;\n  } catch {\n    return null;\n  }\n}\n\nexport const getSNPs = async (value: string, assembly: GenomeSearchProps[\"assembly\"], limit: number, url: string, signal?: AbortSignal) => {\n  const response = await fetch(url, {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: SNP_AUTOCOMPLETE_QUERY,\n      variables: {\n        assembly: assembly.toLowerCase(),\n        snpid: value,\n        limit: limit,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n  return response.json();\n};\n\nexport const getStudys = async (value: string, limit: number, url: string, signal?: AbortSignal) => {\n  const response = await fetch(url, {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: GWAS_AUTOCOMPLETE_QUERY,\n      variables: {\n        studyname_prefix: [value],\n        limit,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n\n  return 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package/dist/ui-components.es69.js

@@ -1,4 +1,4 @@
-import { __exports as e } from "./ui-components.es77.js";
+import { __exports as e } from "./ui-components.es87.js";
 var s;
 function a() {
   if (s) return e;

package/dist/ui-components.es7.js

@@ -1,9 +1,9 @@
 import { j as c } from "./ui-components.es16.js";
-import { c as Y } from "./ui-components.es18.js";
+import { c as Y } from "./ui-components.es23.js";
 import { useState as q } from "react";
 import { Typography as z, Stack as D, Tooltip as G } from "@mui/material";
 import { Launch as J } from "@mui/icons-material";
-import { ASSAY_COLORS as u, assayHoverInfo as K, formatAssay as N } from "./ui-components.es19.js";
+import { ASSAY_COLORS as u, assayHoverInfo as K, formatAssay as N } from "./ui-components.es24.js";
 const te = (F) => {
   const e = Y.c(51), {
     row: t

package/dist/ui-components.es7.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es7.js","sources":["../src/components/BiosampleTable/AssayWheel.tsx"],"sourcesContent":["import { useState, useMemo } from \"react\";\nimport { Tooltip, Stack, Typography } from \"@mui/material\";\nimport { Launch } from \"@mui/icons-material\";\nimport { CcreAssay } from \"./types\";\nimport { ASSAY_COLORS } from \"./helpers\";\nimport { assayHoverInfo, formatAssay } from \"./helpers\";\n\nexport type AssayWheelProps = {\n  /**\n   * The value of the assay should be the experiment accession if the assay exists for that sample\n   */\n  row: { [key in CcreAssay]: string | null };\n};\n\n/**\n *\n * @prop row\n * @returns the assay wheel for the row\n */\nexport const AssayWheel = ({ row }: AssayWheelProps) => {\n  const [hoveredAssay, setHoveredAssay] = useState<CcreAssay | null>(null);\n\n  const height = 36;\n\n  //Constants used for sizing svg elements\n  const radius = 8;\n  const radiusHovered = 9; //If assay is hovered, bump up the radius to create the \"poking out\" effect\n  const fifth = (2 * Math.PI * radius) / 5;\n  const fifthHovered = (2 * Math.PI * radiusHovered) / 5;\n\n  const assays: {\n    id: CcreAssay;\n    accession: string | null;\n    color: string;\n    dashArray: string;\n    radius: number;\n  }[] = useMemo(() => {\n    return [\n      {\n        id: \"dnase\",\n        accession: row.dnase, //Used to provide link to ENCODE for that experiment\n        color: row.dnase ? ASSAY_COLORS.dnase : \"transparent\", //Only color slice if the biosample has data in that assay\n        dashArray: hoveredAssay === \"dnase\" ? `${fifthHovered} ${fifthHovered * 4}` : `${fifth} ${fifth * 4}`, //Use dasharray to create a single slice of 1/5th of the circle.\n        radius: hoveredAssay === \"dnase\" ? radiusHovered : radius,\n      },\n      {\n        id: \"h3k27ac\",\n        accession: row.h3k27ac,\n        color: row.h3k27ac ? ASSAY_COLORS.h3k27ac : \"transparent\",\n        dashArray:\n          hoveredAssay === \"h3k27ac\"\n            ? `0 ${fifthHovered} ${fifthHovered} ${fifthHovered * 3}`\n            : `0 ${fifth} ${fifth} ${fifth * 3}`,\n        radius: hoveredAssay === \"h3k27ac\" ? radiusHovered : radius,\n      },\n      {\n        id: \"h3k4me3\",\n        accession: row.h3k4me3,\n        color: row.h3k4me3 ? ASSAY_COLORS.h3k4me3 : \"transparent\",\n        dashArray:\n          hoveredAssay === \"h3k4me3\"\n            ? `0 ${fifthHovered * 2} ${fifthHovered} ${fifthHovered * 2}`\n            : `0 ${fifth * 2} ${fifth} ${fifth * 2}`,\n        radius: hoveredAssay === \"h3k4me3\" ? radiusHovered : radius,\n      },\n      {\n        id: \"ctcf\",\n        accession: row.ctcf,\n        color: row.ctcf ? ASSAY_COLORS.ctcf : \"transparent\",\n        dashArray:\n          hoveredAssay === \"ctcf\"\n            ? `0 ${fifthHovered * 3} ${fifthHovered} ${fifthHovered * 1}`\n            : `0 ${fifth * 3} ${fifth} ${fifth * 1}`,\n        radius: hoveredAssay === \"ctcf\" ? radiusHovered : radius,\n      },\n      {\n        id: \"atac\",\n        accession: row.atac,\n        color: row.atac ? ASSAY_COLORS.atac : \"transparent\",\n        dashArray: hoveredAssay === \"atac\" ? `0 ${fifthHovered * 4} ${fifthHovered}` : `0 ${fifth * 4} ${fifth}`,\n        radius: hoveredAssay === \"atac\" ? radiusHovered : radius,\n      },\n    ];\n  }, [row.dnase, row.h3k27ac, row.h3k4me3, row.ctcf, row.atac, hoveredAssay, fifthHovered, fifth]);\n\n  return (\n    <Tooltip\n      title={\n        <Stack spacing={1}>\n          <Typography variant=\"body2\">{assayHoverInfo(row)}</Typography>\n          {hoveredAssay && (\n            <>\n              <Typography variant=\"body2\">Click to view {formatAssay(hoveredAssay)} experiment:</Typography>\n              <Stack direction=\"row\" alignItems={\"baseline\"}>\n                <Typography variant=\"body2\">{row[hoveredAssay]}</Typography>\n                <Launch fontSize=\"inherit\" sx={{ ml: 0.5 }} />\n              </Stack>\n            </>\n          )}\n        </Stack>\n      }\n      arrow\n      placement=\"right\"\n    >\n      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onMouseEnter={() => assay.accession && setHoveredAssay(assay.id)}\n              onMouseLeave={() => setHoveredAssay(null)}\n            />\n          </a>\n        ))}\n        {/* Provides dead zone in middle to prevent ATAC wheel from capturing mouse events in center due to it being topmost element */}\n        <circle r={radius} cx={height / 2} cy={height / 2} fill=\"white\" stroke=\"black\" strokeWidth={0.25} />\n      </svg>\n    </Tooltip>\n  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+{"version":3,"file":"ui-components.es7.js","sources":["../src/components/BiosampleTable/AssayWheel.tsx"],"sourcesContent":["import { useState, useMemo } from \"react\";\r\nimport { Tooltip, Stack, Typography } from \"@mui/material\";\r\nimport { Launch } from \"@mui/icons-material\";\r\nimport { CcreAssay } from \"./types\";\r\nimport { ASSAY_COLORS } from \"./helpers\";\r\nimport { assayHoverInfo, formatAssay } from \"./helpers\";\r\n\r\nexport type AssayWheelProps = {\r\n  /**\r\n   * The value of the assay should be the experiment accession if the assay exists for that sample\r\n   */\r\n  row: { [key in CcreAssay]: string | null };\r\n};\r\n\r\n/**\r\n *\r\n * @prop row\r\n * @returns the assay wheel for the row\r\n */\r\nexport const AssayWheel = ({ row }: AssayWheelProps) => {\r\n  const [hoveredAssay, setHoveredAssay] = useState<CcreAssay | null>(null);\r\n\r\n  const height = 36;\r\n\r\n  //Constants used for sizing svg elements\r\n  const radius = 8;\r\n  const radiusHovered = 9; //If assay is hovered, bump up the radius to create the \"poking out\" effect\r\n  const fifth = (2 * Math.PI * radius) / 5;\r\n  const fifthHovered = (2 * Math.PI * radiusHovered) / 5;\r\n\r\n  const assays: {\r\n    id: CcreAssay;\r\n    accession: string | null;\r\n    color: string;\r\n    dashArray: string;\r\n    radius: number;\r\n  }[] = useMemo(() => {\r\n    return [\r\n      {\r\n        id: \"dnase\",\r\n        accession: row.dnase, //Used to provide link to ENCODE for that experiment\r\n        color: row.dnase ? ASSAY_COLORS.dnase : \"transparent\", //Only color slice if the biosample has data in that assay\r\n        dashArray: hoveredAssay === \"dnase\" ? `${fifthHovered} ${fifthHovered * 4}` : `${fifth} ${fifth * 4}`, //Use dasharray to create a single slice of 1/5th of the circle.\r\n        radius: hoveredAssay === \"dnase\" ? radiusHovered : radius,\r\n      },\r\n      {\r\n        id: \"h3k27ac\",\r\n        accession: row.h3k27ac,\r\n        color: row.h3k27ac ? ASSAY_COLORS.h3k27ac : \"transparent\",\r\n        dashArray:\r\n          hoveredAssay === \"h3k27ac\"\r\n            ? `0 ${fifthHovered} ${fifthHovered} ${fifthHovered * 3}`\r\n            : `0 ${fifth} ${fifth} ${fifth * 3}`,\r\n        radius: hoveredAssay === \"h3k27ac\" ? radiusHovered : radius,\r\n      },\r\n      {\r\n        id: \"h3k4me3\",\r\n        accession: row.h3k4me3,\r\n        color: row.h3k4me3 ? ASSAY_COLORS.h3k4me3 : \"transparent\",\r\n        dashArray:\r\n          hoveredAssay === \"h3k4me3\"\r\n            ? `0 ${fifthHovered * 2} ${fifthHovered} ${fifthHovered * 2}`\r\n            : `0 ${fifth * 2} ${fifth} ${fifth * 2}`,\r\n        radius: hoveredAssay === \"h3k4me3\" ? radiusHovered : radius,\r\n      },\r\n      {\r\n        id: \"ctcf\",\r\n        accession: row.ctcf,\r\n        color: row.ctcf ? ASSAY_COLORS.ctcf : \"transparent\",\r\n        dashArray:\r\n          hoveredAssay === \"ctcf\"\r\n            ? `0 ${fifthHovered * 3} ${fifthHovered} ${fifthHovered * 1}`\r\n            : `0 ${fifth * 3} ${fifth} ${fifth * 1}`,\r\n        radius: hoveredAssay === \"ctcf\" ? radiusHovered : radius,\r\n      },\r\n      {\r\n        id: \"atac\",\r\n        accession: row.atac,\r\n        color: row.atac ? ASSAY_COLORS.atac : \"transparent\",\r\n        dashArray: hoveredAssay === \"atac\" ? `0 ${fifthHovered * 4} ${fifthHovered}` : `0 ${fifth * 4} ${fifth}`,\r\n        radius: hoveredAssay === \"atac\" ? radiusHovered : radius,\r\n      },\r\n    ];\r\n  }, [row.dnase, row.h3k27ac, row.h3k4me3, row.ctcf, row.atac, hoveredAssay, fifthHovered, fifth]);\r\n\r\n  return (\r\n    <Tooltip\r\n      title={\r\n        <Stack spacing={1}>\r\n          <Typography variant=\"body2\">{assayHoverInfo(row)}</Typography>\r\n          {hoveredAssay && (\r\n            <>\r\n              <Typography variant=\"body2\">Click to view {formatAssay(hoveredAssay)} experiment:</Typography>\r\n              <Stack direction=\"row\" alignItems={\"baseline\"}>\r\n                <Typography variant=\"body2\">{row[hoveredAssay]}</Typography>\r\n                <Launch fontSize=\"inherit\" sx={{ ml: 0.5 }} />\r\n              </Stack>\r\n            </>\r\n          )}\r\n        </Stack>\r\n      }\r\n      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