@weng-lab/ui-components 3.1.0 → 3.1.1

package/dist/ui-components.es109.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es109.js","sources":["../../../node_modules/.pnpm/@mui+utils@7.3.9_@types+react@19.2.14_react@19.2.4/node_modules/@mui/utils/esm/chainPropTypes/chainPropTypes.js"],"sourcesContent":["export default function chainPropTypes(propType1, propType2) {\n  if (process.env.NODE_ENV === 'production') {\n    return () => null;\n  }\n  return function validate(...args) {\n    return propType1(...args) || propType2(...args);\n  };\n}"],"names":["chainPropTypes","propType1","propType2","args"],"mappings":"AAAe,SAASA,EAAeC,GAAWC,GAAW;AAC3D,SAAI,QAAQ,IAAI,aAAa,eACpB,MAAM,OAER,YAAqBC,GAAM;AAChC,WAAOF,EAAU,GAAGE,CAAI,KAAKD,EAAU,GAAGC,CAAI;AAAA,EAChD;AACF;","x_google_ignoreList":[0]}
+{"version":3,"file":"ui-components.es109.js","sources":["../../../node_modules/.pnpm/@mui+material@7.3.9_@emotio_5efc65b7a21bb615fd4ee8d4bf58b896/node_modules/@mui/material/esm/Slider/useSlider.js"],"sourcesContent":["'use client';\n\nimport * as React from 'react';\nimport ownerDocument from '@mui/utils/ownerDocument';\nimport useControlled from '@mui/utils/useControlled';\nimport useEnhancedEffect from '@mui/utils/useEnhancedEffect';\nimport useEventCallback from '@mui/utils/useEventCallback';\nimport useForkRef from '@mui/utils/useForkRef';\nimport isFocusVisible from '@mui/utils/isFocusVisible';\nimport visuallyHidden from '@mui/utils/visuallyHidden';\nimport clamp from '@mui/utils/clamp';\nimport extractEventHandlers from '@mui/utils/extractEventHandlers';\nimport areArraysEqual from \"../utils/areArraysEqual.js\";\nconst INTENTIONAL_DRAG_COUNT_THRESHOLD = 2;\nfunction getNewValue(currentValue, step, direction, min, max) {\n  return direction === 1 ? Math.min(currentValue + step, max) : Math.max(currentValue - step, min);\n}\nfunction asc(a, b) {\n  return a - b;\n}\nfunction findClosest(values, currentValue) {\n  const {\n    index: closestIndex\n  } = values.reduce((acc, value, index) => {\n    const distance = Math.abs(currentValue - value);\n    if (acc === null || distance < acc.distance || distance === acc.distance) {\n      return {\n        distance,\n        index\n      };\n    }\n    return acc;\n  }, null) ?? {};\n  return closestIndex;\n}\nfunction trackFinger(event, touchId) {\n  // The event is TouchEvent\n  if (touchId.current !== undefined && event.changedTouches) {\n    const touchEvent = event;\n    for (let i = 0; i < touchEvent.changedTouches.length; i += 1) {\n      const touch = touchEvent.changedTouches[i];\n      if (touch.identifier === touchId.current) {\n        return {\n          x: touch.clientX,\n          y: touch.clientY\n        };\n      }\n    }\n    return false;\n  }\n\n  // The event is MouseEvent\n  return {\n    x: event.clientX,\n    y: event.clientY\n  };\n}\nexport function valueToPercent(value, min, max) {\n  return (value - min) * 100 / (max - min);\n}\nfunction percentToValue(percent, min, max) {\n  return (max - min) * percent + min;\n}\nfunction getDecimalPrecision(num) {\n  // This handles the case when num is very small (0.00000001), js will turn this into 1e-8.\n  // When num is bigger than 1 or less than -1 it won't get converted to this notation so it's fine.\n  if (Math.abs(num) < 1) {\n    const parts = num.toExponential().split('e-');\n    const matissaDecimalPart = parts[0].split('.')[1];\n    return (matissaDecimalPart ? matissaDecimalPart.length : 0) + parseInt(parts[1], 10);\n  }\n  const decimalPart = num.toString().split('.')[1];\n  return decimalPart ? decimalPart.length : 0;\n}\nfunction roundValueToStep(value, step, min) {\n  const nearest = Math.round((value - min) / step) * step + min;\n  return Number(nearest.toFixed(getDecimalPrecision(step)));\n}\nfunction setValueIndex({\n  values,\n  newValue,\n  index\n}) {\n  const output = values.slice();\n  output[index] = newValue;\n  return output.sort(asc);\n}\nfunction focusThumb({\n  sliderRef,\n  activeIndex,\n  setActive\n}) {\n  const doc = ownerDocument(sliderRef.current);\n  if (!sliderRef.current?.contains(doc.activeElement) || Number(doc?.activeElement?.getAttribute('data-index')) !== activeIndex) {\n    sliderRef.current?.querySelector(`[type=\"range\"][data-index=\"${activeIndex}\"]`).focus();\n  }\n  if (setActive) {\n    setActive(activeIndex);\n  }\n}\nfunction areValuesEqual(newValue, oldValue) {\n  if (typeof newValue === 'number' && typeof oldValue === 'number') {\n    return newValue === oldValue;\n  }\n  if (typeof newValue === 'object' && typeof oldValue === 'object') {\n    return areArraysEqual(newValue, oldValue);\n  }\n  return false;\n}\nconst axisProps = {\n  horizontal: {\n    offset: percent => ({\n      left: `${percent}%`\n    }),\n    leap: percent => ({\n      width: `${percent}%`\n    })\n  },\n  'horizontal-reverse': {\n    offset: percent => ({\n      right: `${percent}%`\n    }),\n    leap: percent => ({\n      width: `${percent}%`\n    })\n  },\n  vertical: {\n    offset: percent => ({\n      bottom: `${percent}%`\n    }),\n    leap: percent => ({\n      height: `${percent}%`\n    })\n  }\n};\nexport const Identity = x => x;\n\n// TODO: remove support for Safari < 13.\n// https://caniuse.com/#search=touch-action\n//\n// Safari, on iOS, supports touch action since v13.\n// Over 80% of the iOS phones are compatible\n// in August 2020.\n// Utilizing the CSS.supports method to check if touch-action is supported.\n// Since CSS.supports is supported on all but Edge@12 and IE and touch-action\n// is supported on both Edge@12 and IE if CSS.supports is not available that means that\n// touch-action will be supported\nlet cachedSupportsTouchActionNone;\nfunction doesSupportTouchActionNone() {\n  if (cachedSupportsTouchActionNone === undefined) {\n    if (typeof CSS !== 'undefined' && typeof CSS.supports === 'function') {\n      cachedSupportsTouchActionNone = CSS.supports('touch-action', 'none');\n    } else {\n      cachedSupportsTouchActionNone = true;\n    }\n  }\n  return cachedSupportsTouchActionNone;\n}\nexport function useSlider(parameters) {\n  const {\n    'aria-labelledby': ariaLabelledby,\n    defaultValue,\n    disabled = false,\n    disableSwap = false,\n    isRtl = false,\n    marks: marksProp = false,\n    max = 100,\n    min = 0,\n    name,\n    onChange,\n    onChangeCommitted,\n    orientation = 'horizontal',\n    rootRef: ref,\n    scale = Identity,\n    step = 1,\n    shiftStep = 10,\n    tabIndex,\n    value: valueProp\n  } = parameters;\n  const touchId = React.useRef(undefined);\n  // We can't use the :active browser pseudo-classes.\n  // - The active state isn't triggered when clicking on the rail.\n  // - The active state isn't transferred when inversing a range slider.\n  const [active, setActive] = React.useState(-1);\n  const [open, setOpen] = React.useState(-1);\n  const [dragging, setDragging] = React.useState(false);\n  const moveCount = React.useRef(0);\n  // lastChangedValue is updated whenever onChange is triggered.\n  const lastChangedValue = React.useRef(null);\n  const [valueDerived, setValueState] = useControlled({\n    controlled: valueProp,\n    default: defaultValue ?? min,\n    name: 'Slider'\n  });\n  const handleChange = onChange && ((event, value, thumbIndex) => {\n    // Redefine target to allow name and value to be read.\n    // This allows seamless integration with the most popular form libraries.\n    // https://github.com/mui/material-ui/issues/13485#issuecomment-676048492\n    // Clone the event to not override `target` of the original event.\n    const nativeEvent = event.nativeEvent || event;\n    // @ts-ignore The nativeEvent is function, not object\n    const clonedEvent = new nativeEvent.constructor(nativeEvent.type, nativeEvent);\n    Object.defineProperty(clonedEvent, 'target', {\n      writable: true,\n      value: {\n        value,\n        name\n      }\n    });\n    lastChangedValue.current = value;\n    onChange(clonedEvent, value, thumbIndex);\n  });\n  const range = Array.isArray(valueDerived);\n  let values = range ? valueDerived.slice().sort(asc) : [valueDerived];\n  values = values.map(value => value == null ? min : clamp(value, min, max));\n  const marks = marksProp === true && step !== null ? [...Array(Math.floor((max - min) / step) + 1)].map((_, index) => ({\n    value: min + step * index\n  })) : marksProp || [];\n  const marksValues = marks.map(mark => mark.value);\n  const [focusedThumbIndex, setFocusedThumbIndex] = React.useState(-1);\n  const sliderRef = React.useRef(null);\n  const handleRef = useForkRef(ref, sliderRef);\n  const createHandleHiddenInputFocus = otherHandlers => event => {\n    const index = Number(event.currentTarget.getAttribute('data-index'));\n    if (isFocusVisible(event.target)) {\n      setFocusedThumbIndex(index);\n    }\n    setOpen(index);\n    otherHandlers?.onFocus?.(event);\n  };\n  const createHandleHiddenInputBlur = otherHandlers => event => {\n    if (!isFocusVisible(event.target)) {\n      setFocusedThumbIndex(-1);\n    }\n    setOpen(-1);\n    otherHandlers?.onBlur?.(event);\n  };\n  const changeValue = (event, valueInput) => {\n    const index = Number(event.currentTarget.getAttribute('data-index'));\n    const value = values[index];\n    const marksIndex = marksValues.indexOf(value);\n    let newValue = valueInput;\n    if (marks && step == null) {\n      const maxMarksValue = marksValues[marksValues.length - 1];\n      if (newValue >= maxMarksValue) {\n        newValue = maxMarksValue;\n      } else if (newValue <= marksValues[0]) {\n        newValue = marksValues[0];\n      } else {\n        newValue = newValue < value ? marksValues[marksIndex - 1] : marksValues[marksIndex + 1];\n      }\n    }\n    newValue = clamp(newValue, min, max);\n    if (range) {\n      // Bound the new value to the thumb's neighbours.\n      if (disableSwap) {\n        newValue = clamp(newValue, values[index - 1] || -Infinity, values[index + 1] || Infinity);\n      }\n      const previousValue = newValue;\n      newValue = setValueIndex({\n        values,\n        newValue,\n        index\n      });\n      let activeIndex = index;\n\n      // Potentially swap the index if needed.\n      if (!disableSwap) {\n        activeIndex = newValue.indexOf(previousValue);\n      }\n      focusThumb({\n        sliderRef,\n        activeIndex\n      });\n    }\n    setValueState(newValue);\n    setFocusedThumbIndex(index);\n    if (handleChange && !areValuesEqual(newValue, valueDerived)) {\n      handleChange(event, newValue, index);\n    }\n    if (onChangeCommitted) {\n      onChangeCommitted(event, lastChangedValue.current ?? newValue);\n    }\n  };\n  const createHandleHiddenInputKeyDown = otherHandlers => event => {\n    if (['ArrowUp', 'ArrowDown', 'ArrowLeft', 'ArrowRight', 'PageUp', 'PageDown', 'Home', 'End'].includes(event.key)) {\n      event.preventDefault();\n      const index = Number(event.currentTarget.getAttribute('data-index'));\n      const value = values[index];\n      let newValue = null;\n      // Keys actions that change the value by more than the most granular `step`\n      // value are only applied if the step not `null`.\n      // When step is `null`, the `marks` prop is used instead to define valid values.\n      if (step != null) {\n        const stepSize = event.shiftKey ? shiftStep : step;\n        switch (event.key) {\n          case 'ArrowUp':\n            newValue = getNewValue(value, stepSize, 1, min, max);\n            break;\n          case 'ArrowRight':\n            newValue = getNewValue(value, stepSize, isRtl ? -1 : 1, min, max);\n            break;\n          case 'ArrowDown':\n            newValue = getNewValue(value, stepSize, -1, min, max);\n            break;\n          case 'ArrowLeft':\n            newValue = getNewValue(value, stepSize, isRtl ? 1 : -1, min, max);\n            break;\n          case 'PageUp':\n            newValue = getNewValue(value, shiftStep, 1, min, max);\n            break;\n          case 'PageDown':\n            newValue = getNewValue(value, shiftStep, -1, min, max);\n            break;\n          case 'Home':\n            newValue = min;\n            break;\n          case 'End':\n            newValue = max;\n            break;\n          default:\n            break;\n        }\n      } else if (marks) {\n        const maxMarksValue = marksValues[marksValues.length - 1];\n        const currentMarkIndex = marksValues.indexOf(value);\n        const decrementKeys = [isRtl ? 'ArrowRight' : 'ArrowLeft', 'ArrowDown', 'PageDown', 'Home'];\n        const incrementKeys = [isRtl ? 'ArrowLeft' : 'ArrowRight', 'ArrowUp', 'PageUp', 'End'];\n        if (decrementKeys.includes(event.key)) {\n          if (currentMarkIndex === 0) {\n            newValue = marksValues[0];\n          } else {\n            newValue = marksValues[currentMarkIndex - 1];\n          }\n        } else if (incrementKeys.includes(event.key)) {\n          if (currentMarkIndex === marksValues.length - 1) {\n            newValue = maxMarksValue;\n          } else {\n            newValue = marksValues[currentMarkIndex + 1];\n          }\n        }\n      }\n      if (newValue != null) {\n        changeValue(event, newValue);\n      }\n    }\n    otherHandlers?.onKeyDown?.(event);\n  };\n  useEnhancedEffect(() => {\n    if (disabled && sliderRef.current.contains(document.activeElement)) {\n      // This is necessary because Firefox and Safari will keep focus\n      // on a disabled element:\n      // https://codesandbox.io/p/sandbox/mui-pr-22247-forked-h151h?file=/src/App.js\n      // @ts-ignore\n      document.activeElement?.blur();\n    }\n  }, [disabled]);\n  if (disabled && active !== -1) {\n    setActive(-1);\n  }\n  if (disabled && focusedThumbIndex !== -1) {\n    setFocusedThumbIndex(-1);\n  }\n  const createHandleHiddenInputChange = otherHandlers => event => {\n    otherHandlers.onChange?.(event);\n    // this handles value change by Pointer or Touch events\n    // @ts-ignore\n    changeValue(event, event.target.valueAsNumber);\n  };\n  const previousIndex = React.useRef(undefined);\n  let axis = orientation;\n  if (isRtl && orientation === 'horizontal') {\n    axis += '-reverse';\n  }\n  const getFingerNewValue = ({\n    finger,\n    move = false\n  }) => {\n    const {\n      current: slider\n    } = sliderRef;\n    const {\n      width,\n      height,\n      bottom,\n      left\n    } = slider.getBoundingClientRect();\n    let percent;\n    if (axis.startsWith('vertical')) {\n      percent = (bottom - finger.y) / height;\n    } else {\n      percent = (finger.x - left) / width;\n    }\n    if (axis.includes('-reverse')) {\n      percent = 1 - percent;\n    }\n    let newValue;\n    newValue = percentToValue(percent, min, max);\n    if (step) {\n      newValue = roundValueToStep(newValue, step, min);\n    } else {\n      const closestIndex = findClosest(marksValues, newValue);\n      newValue = marksValues[closestIndex];\n    }\n    newValue = clamp(newValue, min, max);\n    let activeIndex = 0;\n    if (range) {\n      if (!move) {\n        activeIndex = findClosest(values, newValue);\n      } else {\n        activeIndex = previousIndex.current;\n      }\n\n      // Bound the new value to the thumb's neighbours.\n      if (disableSwap) {\n        newValue = clamp(newValue, values[activeIndex - 1] || -Infinity, values[activeIndex + 1] || Infinity);\n      }\n      const previousValue = newValue;\n      newValue = setValueIndex({\n        values,\n        newValue,\n        index: activeIndex\n      });\n\n      // Potentially swap the index if needed.\n      if (!(disableSwap && move)) {\n        activeIndex = newValue.indexOf(previousValue);\n        previousIndex.current = activeIndex;\n      }\n    }\n    return {\n      newValue,\n      activeIndex\n    };\n  };\n  const handleTouchMove = useEventCallback(nativeEvent => {\n    const finger = trackFinger(nativeEvent, touchId);\n    if (!finger) {\n      return;\n    }\n    moveCount.current += 1;\n\n    // Cancel move in case some other element consumed a mouseup event and it was not fired.\n    // @ts-ignore buttons doesn't not exists on touch event\n    if (nativeEvent.type === 'mousemove' && nativeEvent.buttons === 0) {\n      // eslint-disable-next-line @typescript-eslint/no-use-before-define\n      handleTouchEnd(nativeEvent);\n      return;\n    }\n    const {\n      newValue,\n      activeIndex\n    } = getFingerNewValue({\n      finger,\n      move: true\n    });\n    focusThumb({\n      sliderRef,\n      activeIndex,\n      setActive\n    });\n    setValueState(newValue);\n    if (!dragging && moveCount.current > INTENTIONAL_DRAG_COUNT_THRESHOLD) {\n      setDragging(true);\n    }\n    if (handleChange && !areValuesEqual(newValue, valueDerived)) {\n      handleChange(nativeEvent, newValue, activeIndex);\n    }\n  });\n  const handleTouchEnd = useEventCallback(nativeEvent => {\n    const finger = trackFinger(nativeEvent, touchId);\n    setDragging(false);\n    if (!finger) {\n      return;\n    }\n    const {\n      newValue\n    } = getFingerNewValue({\n      finger,\n      move: true\n    });\n    setActive(-1);\n    if (nativeEvent.type === 'touchend') {\n      setOpen(-1);\n    }\n    if (onChangeCommitted) {\n      onChangeCommitted(nativeEvent, lastChangedValue.current ?? newValue);\n    }\n    touchId.current = undefined;\n\n    // eslint-disable-next-line @typescript-eslint/no-use-before-define\n    stopListening();\n  });\n  const handleTouchStart = useEventCallback(nativeEvent => {\n    if (disabled) {\n      return;\n    }\n    // If touch-action: none; is not supported we need to prevent the scroll manually.\n    if (!doesSupportTouchActionNone()) {\n      nativeEvent.preventDefault();\n    }\n    const touch = nativeEvent.changedTouches[0];\n    if (touch != null) {\n      // A number that uniquely identifies the current finger in the touch session.\n      touchId.current = touch.identifier;\n    }\n    const finger = trackFinger(nativeEvent, touchId);\n    if (finger !== false) {\n      const {\n        newValue,\n        activeIndex\n      } = getFingerNewValue({\n        finger\n      });\n      focusThumb({\n        sliderRef,\n        activeIndex,\n        setActive\n      });\n      setValueState(newValue);\n      if (handleChange && !areValuesEqual(newValue, valueDerived)) {\n        handleChange(nativeEvent, newValue, activeIndex);\n      }\n    }\n    moveCount.current = 0;\n    const doc = ownerDocument(sliderRef.current);\n    doc.addEventListener('touchmove', handleTouchMove, {\n      passive: true\n    });\n    doc.addEventListener('touchend', handleTouchEnd, {\n      passive: true\n    });\n  });\n  const stopListening = React.useCallback(() => {\n    const doc = ownerDocument(sliderRef.current);\n    doc.removeEventListener('mousemove', handleTouchMove);\n    doc.removeEventListener('mouseup', handleTouchEnd);\n    doc.removeEventListener('touchmove', handleTouchMove);\n    doc.removeEventListener('touchend', handleTouchEnd);\n  }, [handleTouchEnd, handleTouchMove]);\n  React.useEffect(() => {\n    const {\n      current: slider\n    } = sliderRef;\n    slider.addEventListener('touchstart', handleTouchStart, {\n      passive: doesSupportTouchActionNone()\n    });\n    return () => {\n      slider.removeEventListener('touchstart', handleTouchStart);\n      stopListening();\n    };\n  }, [stopListening, handleTouchStart]);\n  React.useEffect(() => {\n    if (disabled) {\n      stopListening();\n    }\n  }, [disabled, stopListening]);\n  const createHandleMouseDown = otherHandlers => event => {\n    otherHandlers.onMouseDown?.(event);\n    if (disabled) {\n      return;\n    }\n    if (event.defaultPrevented) {\n      return;\n    }\n\n    // Only handle left clicks\n    if (event.button !== 0) {\n      return;\n    }\n\n    // Avoid text selection\n    event.preventDefault();\n    const finger = trackFinger(event, touchId);\n    if (finger !== false) {\n      const {\n        newValue,\n        activeIndex\n      } = getFingerNewValue({\n        finger\n      });\n      focusThumb({\n        sliderRef,\n        activeIndex,\n        setActive\n      });\n      setValueState(newValue);\n      if (handleChange && !areValuesEqual(newValue, valueDerived)) {\n        handleChange(event, newValue, activeIndex);\n      }\n    }\n    moveCount.current = 0;\n    const doc = ownerDocument(sliderRef.current);\n    doc.addEventListener('mousemove', handleTouchMove, {\n      passive: true\n    });\n    doc.addEventListener('mouseup', handleTouchEnd);\n  };\n  const trackOffset = valueToPercent(range ? values[0] : min, min, max);\n  const trackLeap = valueToPercent(values[values.length - 1], min, max) - trackOffset;\n  const getRootProps = (externalProps = {}) => {\n    const externalHandlers = extractEventHandlers(externalProps);\n    const ownEventHandlers = {\n      onMouseDown: createHandleMouseDown(externalHandlers || {})\n    };\n    const mergedEventHandlers = {\n      ...externalHandlers,\n      ...ownEventHandlers\n    };\n    return {\n      ...externalProps,\n      ref: handleRef,\n      ...mergedEventHandlers\n    };\n  };\n  const createHandleMouseOver = otherHandlers => event => {\n    otherHandlers.onMouseOver?.(event);\n    const index = Number(event.currentTarget.getAttribute('data-index'));\n    setOpen(index);\n  };\n  const createHandleMouseLeave = otherHandlers => event => {\n    otherHandlers.onMouseLeave?.(event);\n    setOpen(-1);\n  };\n  const getThumbProps = (externalProps = {}) => {\n    const externalHandlers = extractEventHandlers(externalProps);\n    const ownEventHandlers = {\n      onMouseOver: createHandleMouseOver(externalHandlers || {}),\n      onMouseLeave: createHandleMouseLeave(externalHandlers || {})\n    };\n    return {\n      ...externalProps,\n      ...externalHandlers,\n      ...ownEventHandlers\n    };\n  };\n  const getThumbStyle = index => {\n    return {\n      // So the non active thumb doesn't show its label on hover.\n      pointerEvents: active !== -1 && active !== index ? 'none' : undefined\n    };\n  };\n  let cssWritingMode;\n  if (orientation === 'vertical') {\n    cssWritingMode = isRtl ? 'vertical-rl' : 'vertical-lr';\n  }\n  const getHiddenInputProps = (externalProps = {}) => {\n    const externalHandlers = extractEventHandlers(externalProps);\n    const ownEventHandlers = {\n      onChange: createHandleHiddenInputChange(externalHandlers || {}),\n      onFocus: createHandleHiddenInputFocus(externalHandlers || {}),\n      onBlur: createHandleHiddenInputBlur(externalHandlers || {}),\n      onKeyDown: createHandleHiddenInputKeyDown(externalHandlers || {})\n    };\n    const mergedEventHandlers = {\n      ...externalHandlers,\n      ...ownEventHandlers\n    };\n    return {\n      tabIndex,\n      'aria-labelledby': ariaLabelledby,\n      'aria-orientation': orientation,\n      'aria-valuemax': scale(max),\n      'aria-valuemin': scale(min),\n      name,\n      type: 'range',\n      min: parameters.min,\n      max: parameters.max,\n      step: parameters.step === null && parameters.marks ? 'any' : parameters.step ?? undefined,\n      disabled,\n      ...externalProps,\n      ...mergedEventHandlers,\n      style: {\n        ...visuallyHidden,\n        direction: isRtl ? 'rtl' : 'ltr',\n        // So that VoiceOver's focus indicator matches the thumb's dimensions\n        width: '100%',\n        height: '100%',\n        writingMode: cssWritingMode\n      }\n    };\n  };\n  return {\n    active,\n    axis: axis,\n    axisProps,\n    dragging,\n    focusedThumbIndex,\n    getHiddenInputProps,\n    getRootProps,\n    getThumbProps,\n    marks: marks,\n    open,\n    range,\n    rootRef: handleRef,\n    trackLeap,\n    trackOffset,\n    values,\n    getThumbStyle\n  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package/dist/ui-components.es11.js

@@ -2,7 +2,7 @@ import { j as a } from "./ui-components.es16.js";
 import { isAutogeneratedRow as _, gridRowIdSelector as h, gridRowNodeSelector as p, gridRowSelector as C } from "@mui/x-data-grid-premium";
 import { AssayWheel as b } from "./ui-components.es7.js";
 import { DownloadButton as o } from "./ui-components.es10.js";
-import { AggregateDownloadButton as N, getAvailableFiles as x } from "./ui-components.es20.js";
+import { AggregateDownloadButton as N, getAvailableFiles as x } from "./ui-components.es25.js";
 import { Tooltip as v, Stack as w, capitalize as d } from "@mui/material";
 import { InfoOutline as k, Check as D } from "@mui/icons-material";
 const E = {

package/dist/ui-components.es11.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es11.js","sources":["../src/components/BiosampleTable/columns.tsx"],"sourcesContent":["import {\n  GridColDef,\n  GridComparatorFn,\n  gridRowIdSelector,\n  gridRowNodeSelector,\n  gridRowSelector,\n  isAutogeneratedRow,\n} from \"@mui/x-data-grid-premium\";\nimport { AssayWheel } from \"./AssayWheel\";\nimport { CcreAssay, EncodeBiosample } from \"./types\";\nimport { DownloadButton } from \"./DownloadButton\";\nimport { AggregateDownloadButton, getAvailableFiles } from \"./AggregateDownload\";\nimport { capitalize, Stack, Tooltip } from \"@mui/material\";\nimport { Check, InfoOutline } from \"@mui/icons-material\";\n\n/**\n * @todo at some point, instead of checking for is rowNode.type === \"group\", can use isAutogeneratedRow instead\n */\n\nexport const ontologyCol: GridColDef<EncodeBiosample> = {\n  field: \"ontology\",\n  headerName: \"Organ/Tissue\",\n  type: \"singleSelect\",\n  valueOptions: [\n    \"adipose\",\n    \"adrenal gland\",\n    \"blood\",\n    \"blood vessel\",\n    \"bone\",\n    \"bone marrow\",\n    \"brain\",\n    \"breast\",\n    \"connective tissue\",\n    \"embryo\",\n    \"epithelium\",\n    \"esophagus\",\n    \"eye\",\n    \"fallopian tube\",\n    \"gallbladder\",\n    \"heart\",\n    \"kidney\",\n    \"large intestine\",\n    \"limb\",\n    \"liver\",\n    \"lung\",\n    \"lymphoid tissue\",\n    \"mouth\",\n    \"muscle\",\n    \"nerve\",\n    \"nose\",\n    \"ovary\",\n    \"pancreas\",\n    \"paraythroid gland\",\n    \"penis\",\n    \"placenta\",\n    \"prostate\",\n    \"skin\",\n    \"small intestine\",\n    \"spinal cord\",\n    \"spleen\",\n    \"stomach\",\n    \"testis\",\n    \"thymus\",\n    \"thyroid\",\n    \"urinary bladder\",\n    \"uterus\",\n    \"vagina\",\n  ],\n  valueFormatter: (value) => value && capitalize(value),\n};\n\nexport const displayNameCol: GridColDef<EncodeBiosample> = {\n  field: \"displayname\",\n  headerName: \"Biosample\",\n  valueFormatter: (value) => value && capitalize(value),\n  maxWidth: 300,\n};\n\nexport const sampleTypeCol: GridColDef<EncodeBiosample> = {\n  field: \"sampleType\",\n  headerName: \"Sample Type\",\n  type: \"singleSelect\",\n  valueOptions: [\"tissue\", \"primary cell\", \"cell line\", \"in vitro differentiated cells\", \"organoid\"],\n  valueFormatter: (value) => value && capitalize(value),\n};\n\nexport const lifeStageCol: GridColDef<EncodeBiosample> = {\n  field: \"lifeStage\",\n  headerName: \"Life Stage\",\n  type: \"singleSelect\",\n  valueOptions: [\"adult\", \"embryonic\"],\n  valueFormatter: (value) => value && capitalize(value),\n};\n\nexport const assaysCol: GridColDef<EncodeBiosample> = {\n  field: \"assays\",\n  headerName: \"Assays\",\n  valueGetter: (_, row) => {\n    const availableAssays = [];\n    if (row.dnase_experiment_accession) availableAssays.push(\"DNase\");\n    if (row.atac_experiment_accession) availableAssays.push(\"ATAC\");\n    if (row.h3k4me3_experiment_accession) availableAssays.push(\"H3K4me3\");\n    if (row.h3k27ac_experiment_accession) availableAssays.push(\"H3K27ac\");\n    if (row.ctcf_experiment_accession) availableAssays.push(\"CTCF\");\n    return availableAssays.join(\",\");\n  },\n  sortComparator: (v1, v2) => {\n    const count1 = v1.split(\",\").filter((s: string) => s.length > 0).length;\n    const count2 = v2.split(\",\").filter((s: string) => s.length > 0).length;\n    return count1 - count2;\n  },\n  renderCell: (params) => {\n    if (params.rowNode.type === \"group\") return null;\n    const row = params.row;\n    return (\n      <div onClick={(e) => e.stopPropagation()}>\n        <AssayWheel\n          row={{\n            dnase: row.dnase_experiment_accession,\n            atac: row.atac_experiment_accession,\n            h3k4me3: row.h3k4me3_experiment_accession,\n            h3k27ac: row.h3k27ac_experiment_accession,\n            ctcf: row.ctcf_experiment_accession,\n          }}\n        />\n      </div>\n    );\n  },\n  groupable: false,\n};\n\n// -- Collection Column Helpers --\n\nconst collections = [\"Core\", \"Partial\", \"Ancillary\"] as const;\n\n//Handles the two experiments that have unprocessed H3K4me3 samples which have \"NA\" values in file\n//GM12866_ENCDO000ABQ & neural_crest_cell_ENCDO222AAA\nconst fileExists = (fileID: string | null): Boolean => {\n  return !!fileID && fileID !== \"NA\"\n}\n\nconst getCollectionForSample = (sample: EncodeBiosample): (typeof collections)[number] | null => {\n  const filesAvailable: Record<CcreAssay, Boolean> = {\n    dnase: fileExists(sample.dnase_file_accession),\n    h3k4me3: fileExists(sample.h3k4me3_file_accession),\n    h3k27ac: fileExists(sample.h3k27ac_file_accession),\n    ctcf: fileExists(sample.ctcf_file_accession),\n    atac: fileExists(sample.atac_file_accession),\n  };\n  if (!Object.values(filesAvailable).includes(true)) return null; // True for grouping rows and GM12866_ENCDO000ABQ\n  let collection: (typeof collections)[number] = \"Ancillary\";\n  if (filesAvailable.dnase) {\n    collection = \"Partial\";\n    if (filesAvailable.ctcf && filesAvailable.h3k4me3 && filesAvailable.h3k27ac) {\n      collection = \"Core\";\n    }\n  }\n  return collection;\n};\n\n// define this to properly sort grouping rows and GM12866_ENCDO000ABQ\nconst sortOrder = [...collections, null]\n\nexport const collectionCol: GridColDef<EncodeBiosample> = {\n  field: \"collection\",\n  headerName: \"Collection\",\n  type: \"singleSelect\",\n  valueOptions: [...collections],\n  valueGetter: (_, row) => getCollectionForSample(row),\n  renderCell: (params) => {\n    const row = params.row\n    if (\n      (row.dnase_experiment_accession && !fileExists(row.dnase_file_accession)) ||\n      (row.h3k4me3_experiment_accession && !fileExists(row.h3k4me3_file_accession)) ||\n      (row.h3k27ac_experiment_accession && !fileExists(row.h3k27ac_file_accession)) ||\n      (row.ctcf_experiment_accession && !fileExists(row.ctcf_file_accession))\n    )\n      return (\n        <Tooltip title=\"This sample's H3K4me3 experiment data was not run through the ENCODE pipeline. This assay is ignored when placing this sample in its given collection\">\n          <Stack direction={\"row\"} alignItems={\"center\"}>\n            {row.name === \"GM12866_ENCDO000ABQ\" ? \"NA\" : getCollectionForSample(row)}\n            <InfoOutline fontSize=\"small\" />\n          </Stack>\n        </Tooltip>\n      );\n    else return getCollectionForSample(row);\n  },\n  sortComparator: (v1, v2) => sortOrder.indexOf(v1) - sortOrder.indexOf(v2),\n};\n\n//ENCODE Experiment Accession (plain text)\nexport const dnaseExpCol: GridColDef<EncodeBiosample> = {\n  field: \"dnase_experiment_accession\",\n  headerName: \"DNase Exp. ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const h3k4me3ExpCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k4me3_experiment_accession\",\n  headerName: \"H3K4me3 Exp. ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const h3k27acExpCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k27ac_experiment_accession\",\n  headerName: \"H3K27ac Exp. ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const ctcfExpCol: GridColDef<EncodeBiosample> = {\n  field: \"ctcf_experiment_accession\",\n  headerName: \"CTCF Exp. ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const atacExpCol: GridColDef<EncodeBiosample> = {\n  field: \"atac_experiment_accession\",\n  headerName: \"ATAC Exp. ID\",\n  sortable: false,\n  groupable: false,\n};\n\n//ENCODE File ID (plain text)\nexport const dnaseFileIdCol: GridColDef<EncodeBiosample> = {\n  field: \"dnase_file_accession\",\n  headerName: \"DNase File ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const h3k4me3FileIdCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k4me3_file_accession\",\n  headerName: \"H3K4me3 File ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const h3k27acFileIdCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k27ac_file_accession\",\n  headerName: \"H3K27ac File ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const ctcfFileIdCol: GridColDef<EncodeBiosample> = {\n  field: \"ctcf_file_accession\",\n  headerName: \"CTCF File ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const atacFileIdCol: GridColDef<EncodeBiosample> = {\n  field: \"atac_file_accession\",\n  headerName: \"ATAC File ID\",\n  sortable: false,\n  groupable: false,\n};\n\nexport const dnaseZscoreUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"dnaseZ\",\n  headerName: \"DNase Z-scores\",\n  valueGetter: (_, row) =>\n    row.dnase_experiment_accession && row.dnase_file_accession\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.dnase_experiment_accession}-${row.dnase_file_accession}.tsv`\n      : null,\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download DNase z-score by cCRE (.tsv) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"DNase\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const h3k4me3ZscoreUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k4me3Z\",\n  headerName: \"H3K4me3 Z-scores\",\n  valueGetter: (_, row) =>\n    //check if file exists to handle the two samples with unprocessed h3k4me3 experiments: GM12866_ENCDO000ABQ & neural_crest_cell_ENCDO222AAA\n    row.h3k4me3_experiment_accession && fileExists(row.h3k4me3_file_accession)\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.h3k4me3_experiment_accession}-${row.h3k4me3_file_accession}.tsv`\n      : null,\n  renderCell: (params) => {\n    if ([\"GM12866_ENCDO000ABQ\", \"neural_crest_cell_ENCDO222AAA\"].includes(params.row.name))\n      return (\n        <DownloadButton\n          disabled\n          message={() =>\n            \"This sample's H3K4me3 experiment was not run through the ENCODE Pipeline and thus z-scores are not available\"\n          }\n          url={params.value}\n          displayName={params.row.displayname}\n          assay=\"H3K4me3\"\n          ontology={params.row.ontology}\n        />\n      );\n    else if (!(params.rowNode.type === \"group\") && params.value)\n      return (\n        <DownloadButton\n          message={(fileSize) => `Download H3K4me3 z-score by cCRE (.tsv) - ${fileSize}`}\n          url={params.value}\n          displayName={params.row.displayname}\n          assay=\"H3K4me3\"\n          ontology={params.row.ontology}\n        />\n      );\n  },\n  groupable: false,\n  sortable: false,\n};\n\nexport const h3k27acZscoreUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k27acZ\",\n  headerName: \"H3K27ac Z-scores\",\n  valueGetter: (_, row) =>\n    row.h3k27ac_experiment_accession && row.h3k27ac_file_accession\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.h3k27ac_experiment_accession}-${row.h3k27ac_file_accession}.tsv`\n      : null,\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download H3K27ac z-score by cCRE (.tsv) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"H3K27ac\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const ctcfZscoreUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"ctcfZ\",\n  headerName: \"CTCF Z-scores\",\n  valueGetter: (_, row) =>\n    row.ctcf_experiment_accession && row.ctcf_file_accession\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.ctcf_experiment_accession}-${row.ctcf_file_accession}.tsv`\n      : null,\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download CTCF z-score by cCRE (.tsv) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"CTCF\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const atacZscoreUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"atacZ\",\n  headerName: \"ATAC Z-scores\",\n  valueGetter: (_, row) =>\n    row.atac_experiment_accession && row.atac_file_accession\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.atac_experiment_accession}-${row.atac_file_accession}.tsv`\n      : null,\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download ATAC z-score by cCRE (.tsv) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"ATAC\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const dnaseSignalUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"dnase_signal_url\",\n  headerName: \"DNase Signal\",\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download DNase Signal (.bigWig) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"DNase\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const h3k4me3SignalUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k4me3_signal_url\",\n  headerName: \"H3K4me3 Signal\",\n  valueGetter: (value, row) => (row.h3k4me3_file_accession === \"NA\" ? null : value),\n  renderCell: (params) => {\n    if ([\"GM12866_ENCDO000ABQ\", \"neural_crest_cell_ENCDO222AAA\"].includes(params.row.name))\n      return (\n        <DownloadButton\n          disabled\n          message={() =>\n            \"This sample's H3K4me3 experiment was not run through the ENCODE Pipeline and thus the signal file is not available\"\n          }\n          url={params.value}\n          displayName={params.row.displayname}\n          assay=\"H3K4me3\"\n          ontology={params.row.ontology}\n        />\n      );\n    else if (!(params.rowNode.type === \"group\") && params.value)\n      return (\n        <DownloadButton\n          message={(fileSize) => `Download H3K4me3 Signal (.bigWig) - ${fileSize}`}\n          url={params.value}\n          displayName={params.row.displayname}\n          assay=\"H3K4me3\"\n          ontology={params.row.ontology}\n        />\n      );\n  },\n  groupable: false,\n  sortable: false,\n};\n\nexport const h3k27acSignalUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k27ac_signal_url\",\n  headerName: \"H3K27ac Signal\",\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download H3K27ac Signal (.bigWig) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"H3K27ac\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const ctcfSignalUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"ctcf_signal_url\",\n  headerName: \"CTCF Signal\",\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download CTCF Signal (.bigWig) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"CTCF\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const atacSignalUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"atac_signal_url\",\n  headerName: \"ATAC Signal\",\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download ATAC Signal (.bigWig) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"ATAC\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const chromHmmUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"chromhmm_url\",\n  headerName: \"ChromHMM States\",\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download ChromHMM States (.bigBed) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"ChromHMM\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const ccreBedUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"bedurl\",\n  headerName: \"cCREs (.bed)\",\n  align: \"center\",\n  valueGetter: (_, row, __, apiRef) => {\n    if (isAutogeneratedRow(row)) {\n      const id = gridRowIdSelector(apiRef, row);\n      const rowNode = gridRowNodeSelector(apiRef, id);\n      const isGroupingByOntology = rowNode.type === \"group\" && rowNode.groupingField === \"ontology\";\n      if (isGroupingByOntology && typeof rowNode.groupingKey === \"string\") {\n        // Check the first child row's assembly\n        const childRowIds = rowNode.children;\n        if (childRowIds && childRowIds.length > 0) {\n          const firstChildData = gridRowSelector(apiRef, childRowIds[0]);\n          if (firstChildData?.assembly === \"GRCh38\") {\n            return getAvailableFiles(rowNode.groupingKey)\n              .map((x) => `https://downloads.wenglab.org/${x.filename}`)\n              .join(\",\");\n          }\n        }\n      }\n      return null;\n    }\n    const signalIDs = [\n      row.dnase_file_accession,\n      row.h3k4me3_file_accession,\n      row.h3k27ac_file_accession,\n      row.ctcf_file_accession,\n    ].filter((id) => id !== null && id !== undefined && id !== \"NA\");\n    if (!signalIDs.length) return null // aka is ATAC-only\n    return `https://downloads.wenglab.org/Registry-V4/${signalIDs.join(\"_\")}.bed`;\n  },\n  renderCell: (params) => {\n    if (params.rowNode.type === \"group\") {\n      if (params.rowNode.groupingField === \"ontology\" && params.value) {\n        const ontology = (params.rowNode.groupingKey as string) ?? \"\";\n        return <AggregateDownloadButton ontology={ontology} />;\n      }\n      return null;\n    }\n    return (\n      <DownloadButton\n        message={(fileSize) =>\n          params.value ? `Download cCREs (.bed) - ${fileSize}` : \"cCREs only available for samples with DNase, H3K4me3, H3H27ac, and/or CTCF data\"\n        }\n        url={params.value}\n        disabled={!params.value} //aka is ATAC-only\n        displayName={params.row.displayname}\n        assay=\"cCREs\"\n        ontology={params.row.ontology}\n      />\n    );\n  },\n  groupable: false,\n  sortable: false,\n};\n\nexport const ccreBigBedUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"bigbedurl\",\n  headerName: \"cCREs (.bigBed)\",\n  align: 'center',\n  valueGetter: (value: string, row) => {\n    if (row.name === \"GM12866_ENCDO000ABQ\") return null //This sample has no cCREs file\n    if (row.name === \"neural_crest_cell_ENCDO222AAA\") return value.replaceAll('_NA_', '_') //The url in file includes \"NA\" H3K4me3 file ID\n    else return value\n  },\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" && (\n      <DownloadButton\n        message={(fileSize) =>\n          params.value ? `Download cCREs (.bigBed) - ${fileSize}` : \"cCREs only available for samples with DNase, H3K4me3, H3H27ac, and/or CTCF data\"\n        }\n        url={params.value}\n        disabled={!params.value} //aka is ATAC-only\n        displayName={params.row.displayname}\n        assay=\"cCREs\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const rnaSeqCheckCol: GridColDef<EncodeBiosample> = {\n  field: \"rnaSeq\",\n  headerName: \"Has RNA Seq\",\n  type: \"boolean\",\n  valueGetter: (_, row) => (isAutogeneratedRow(row) ? null : !!row?.rna_seq_tracks?.length),\n  renderCell: (params) => {\n    if (params.value) {\n      return <Check />;\n    } else return null;\n  },\n};\n\nexport const columns: GridColDef<EncodeBiosample>[] = [\n  displayNameCol,\n  assaysCol,\n  ontologyCol,\n  sampleTypeCol,\n  lifeStageCol,\n  collectionCol,\n  ccreBedUrlCol,\n  ccreBigBedUrlCol,\n  dnaseExpCol,\n  dnaseFileIdCol,\n  dnaseZscoreUrlCol,\n  dnaseSignalUrlCol,\n  atacExpCol,\n  atacFileIdCol,\n  atacZscoreUrlCol,\n  atacSignalUrlCol,\n  h3k4me3ExpCol,\n  h3k4me3FileIdCol,\n  h3k4me3ZscoreUrlCol,\n  h3k4me3SignalUrlCol,\n  h3k27acExpCol,\n  h3k27acFileIdCol,\n  h3k27acZscoreUrlCol,\n  h3k27acSignalUrlCol,\n  ctcfExpCol,\n  ctcfFileIdCol,\n  ctcfZscoreUrlCol,\n  ctcfSignalUrlCol,\n  chromHmmUrlCol,\n  rnaSeqCheckCol,\n];\n\n/**\n * useful for resetting visible columns by spreading this then overriding with visible cols\n */\nexport const allColsHidden = {\n  displayname: false,\n  assays: false,\n  ontology: false,\n  sampleType: false,\n  lifeStage: false,\n  collection: false,\n  bedurl: false,\n  bigbedurl: false,\n  dnase_experiment_accession: false,\n  dnase_file_accession: false,\n  dnaseZ: false,\n  dnase_signal_url: false,\n  atac_experiment_accession: false,\n  atac_file_accession: false,\n  atacZ: false,\n  atac_signal_url: false,\n  h3k4me3_experiment_accession: false,\n  h3k4me3_file_accession: false,\n  h3k4me3Z: false,\n  h3k4me3_signal_url: false,\n  h3k27ac_experiment_accession: false,\n  h3k27ac_file_accession: false,\n  h3k27acZ: false,\n  h3k27ac_signal_url: false,\n  ctcf_experiment_accession: false,\n  ctcf_file_accession: false,\n  ctcfZ: false,\n  ctcf_signal_url: false,\n  chromhmm_url: false,\n  rnaSeq: 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+{"version":3,"file":"ui-components.es11.js","sources":["../src/components/BiosampleTable/columns.tsx"],"sourcesContent":["import {\r\n  GridColDef,\r\n  GridComparatorFn,\r\n  gridRowIdSelector,\r\n  gridRowNodeSelector,\r\n  gridRowSelector,\r\n  isAutogeneratedRow,\r\n} from \"@mui/x-data-grid-premium\";\r\nimport { AssayWheel } from \"./AssayWheel\";\r\nimport { CcreAssay, EncodeBiosample } from \"./types\";\r\nimport { DownloadButton } from \"./DownloadButton\";\r\nimport { AggregateDownloadButton, getAvailableFiles } from \"./AggregateDownload\";\r\nimport { capitalize, Stack, Tooltip } from \"@mui/material\";\r\nimport { Check, InfoOutline } from \"@mui/icons-material\";\r\n\r\n/**\r\n * @todo at some point, instead of checking for is rowNode.type === \"group\", can use isAutogeneratedRow instead\r\n */\r\n\r\nexport const ontologyCol: GridColDef<EncodeBiosample> = {\r\n  field: \"ontology\",\r\n  headerName: \"Organ/Tissue\",\r\n  type: \"singleSelect\",\r\n  valueOptions: [\r\n    \"adipose\",\r\n    \"adrenal gland\",\r\n    \"blood\",\r\n    \"blood vessel\",\r\n    \"bone\",\r\n    \"bone marrow\",\r\n    \"brain\",\r\n    \"breast\",\r\n    \"connective tissue\",\r\n    \"embryo\",\r\n    \"epithelium\",\r\n    \"esophagus\",\r\n    \"eye\",\r\n    \"fallopian tube\",\r\n    \"gallbladder\",\r\n    \"heart\",\r\n    \"kidney\",\r\n    \"large intestine\",\r\n    \"limb\",\r\n    \"liver\",\r\n    \"lung\",\r\n    \"lymphoid tissue\",\r\n    \"mouth\",\r\n    \"muscle\",\r\n    \"nerve\",\r\n    \"nose\",\r\n    \"ovary\",\r\n    \"pancreas\",\r\n    \"paraythroid gland\",\r\n    \"penis\",\r\n    \"placenta\",\r\n    \"prostate\",\r\n    \"skin\",\r\n    \"small intestine\",\r\n    \"spinal cord\",\r\n    \"spleen\",\r\n    \"stomach\",\r\n    \"testis\",\r\n    \"thymus\",\r\n    \"thyroid\",\r\n    \"urinary bladder\",\r\n    \"uterus\",\r\n    \"vagina\",\r\n  ],\r\n  valueFormatter: (value) => value && capitalize(value),\r\n};\r\n\r\nexport const displayNameCol: GridColDef<EncodeBiosample> = {\r\n  field: \"displayname\",\r\n  headerName: \"Biosample\",\r\n  valueFormatter: (value) => value && capitalize(value),\r\n  maxWidth: 300,\r\n};\r\n\r\nexport const sampleTypeCol: GridColDef<EncodeBiosample> = {\r\n  field: \"sampleType\",\r\n  headerName: \"Sample Type\",\r\n  type: \"singleSelect\",\r\n  valueOptions: [\"tissue\", \"primary cell\", \"cell line\", \"in vitro differentiated cells\", \"organoid\"],\r\n  valueFormatter: (value) => value && capitalize(value),\r\n};\r\n\r\nexport const lifeStageCol: GridColDef<EncodeBiosample> = {\r\n  field: \"lifeStage\",\r\n  headerName: \"Life Stage\",\r\n  type: \"singleSelect\",\r\n  valueOptions: [\"adult\", \"embryonic\"],\r\n  valueFormatter: (value) => value && capitalize(value),\r\n};\r\n\r\nexport const assaysCol: GridColDef<EncodeBiosample> = {\r\n  field: \"assays\",\r\n  headerName: \"Assays\",\r\n  valueGetter: (_, row) => {\r\n    const availableAssays = [];\r\n    if (row.dnase_experiment_accession) availableAssays.push(\"DNase\");\r\n    if (row.atac_experiment_accession) availableAssays.push(\"ATAC\");\r\n    if (row.h3k4me3_experiment_accession) availableAssays.push(\"H3K4me3\");\r\n    if (row.h3k27ac_experiment_accession) availableAssays.push(\"H3K27ac\");\r\n    if (row.ctcf_experiment_accession) availableAssays.push(\"CTCF\");\r\n    return availableAssays.join(\",\");\r\n  },\r\n  sortComparator: (v1, v2) => {\r\n    const count1 = v1.split(\",\").filter((s: string) => s.length > 0).length;\r\n    const count2 = v2.split(\",\").filter((s: string) => s.length > 0).length;\r\n    return count1 - count2;\r\n  },\r\n  renderCell: (params) => {\r\n    if (params.rowNode.type === \"group\") return null;\r\n    const row = params.row;\r\n    return (\r\n      <div onClick={(e) => e.stopPropagation()}>\r\n        <AssayWheel\r\n          row={{\r\n            dnase: row.dnase_experiment_accession,\r\n            atac: row.atac_experiment_accession,\r\n            h3k4me3: row.h3k4me3_experiment_accession,\r\n            h3k27ac: row.h3k27ac_experiment_accession,\r\n            ctcf: row.ctcf_experiment_accession,\r\n          }}\r\n        />\r\n      </div>\r\n    );\r\n  },\r\n  groupable: false,\r\n};\r\n\r\n// -- Collection Column Helpers --\r\n\r\nconst collections = [\"Core\", \"Partial\", \"Ancillary\"] as const;\r\n\r\n//Handles the two experiments that have unprocessed H3K4me3 samples which have \"NA\" values in file\r\n//GM12866_ENCDO000ABQ & neural_crest_cell_ENCDO222AAA\r\nconst fileExists = (fileID: string | null): Boolean => {\r\n  return !!fileID && fileID !== \"NA\"\r\n}\r\n\r\nconst getCollectionForSample = (sample: EncodeBiosample): (typeof collections)[number] | null => {\r\n  const filesAvailable: Record<CcreAssay, Boolean> = {\r\n    dnase: fileExists(sample.dnase_file_accession),\r\n    h3k4me3: fileExists(sample.h3k4me3_file_accession),\r\n    h3k27ac: fileExists(sample.h3k27ac_file_accession),\r\n    ctcf: fileExists(sample.ctcf_file_accession),\r\n    atac: fileExists(sample.atac_file_accession),\r\n  };\r\n  if (!Object.values(filesAvailable).includes(true)) return null; // True for grouping rows and GM12866_ENCDO000ABQ\r\n  let collection: (typeof collections)[number] = \"Ancillary\";\r\n  if (filesAvailable.dnase) {\r\n    collection = \"Partial\";\r\n    if (filesAvailable.ctcf && filesAvailable.h3k4me3 && filesAvailable.h3k27ac) {\r\n      collection = \"Core\";\r\n    }\r\n  }\r\n  return collection;\r\n};\r\n\r\n// define this to properly sort grouping rows and GM12866_ENCDO000ABQ\r\nconst sortOrder = [...collections, null]\r\n\r\nexport const collectionCol: GridColDef<EncodeBiosample> = {\r\n  field: \"collection\",\r\n  headerName: \"Collection\",\r\n  type: \"singleSelect\",\r\n  valueOptions: [...collections],\r\n  valueGetter: (_, row) => getCollectionForSample(row),\r\n  renderCell: (params) => {\r\n    const row = params.row\r\n    if (\r\n      (row.dnase_experiment_accession && !fileExists(row.dnase_file_accession)) ||\r\n      (row.h3k4me3_experiment_accession && !fileExists(row.h3k4me3_file_accession)) ||\r\n      (row.h3k27ac_experiment_accession && !fileExists(row.h3k27ac_file_accession)) ||\r\n      (row.ctcf_experiment_accession && !fileExists(row.ctcf_file_accession))\r\n    )\r\n      return (\r\n        <Tooltip title=\"This sample's H3K4me3 experiment data was not run through the ENCODE pipeline. This assay is ignored when placing this sample in its given collection\">\r\n          <Stack direction={\"row\"} alignItems={\"center\"}>\r\n            {row.name === \"GM12866_ENCDO000ABQ\" ? \"NA\" : getCollectionForSample(row)}\r\n            <InfoOutline fontSize=\"small\" />\r\n          </Stack>\r\n        </Tooltip>\r\n      );\r\n    else return getCollectionForSample(row);\r\n  },\r\n  sortComparator: (v1, v2) => sortOrder.indexOf(v1) - sortOrder.indexOf(v2),\r\n};\r\n\r\n//ENCODE Experiment Accession (plain text)\r\nexport const dnaseExpCol: GridColDef<EncodeBiosample> = {\r\n  field: \"dnase_experiment_accession\",\r\n  headerName: \"DNase Exp. ID\",\r\n  sortable: false,\r\n  groupable: false,\r\n};\r\nexport const h3k4me3ExpCol: GridColDef<EncodeBiosample> = {\r\n  field: \"h3k4me3_experiment_accession\",\r\n  headerName: \"H3K4me3 Exp. ID\",\r\n  sortable: false,\r\n  groupable: false,\r\n};\r\nexport const h3k27acExpCol: GridColDef<EncodeBiosample> = {\r\n  field: \"h3k27ac_experiment_accession\",\r\n  headerName: \"H3K27ac Exp. ID\",\r\n  sortable: false,\r\n  groupable: false,\r\n};\r\nexport const ctcfExpCol: GridColDef<EncodeBiosample> = {\r\n  field: \"ctcf_experiment_accession\",\r\n  headerName: \"CTCF Exp. ID\",\r\n  sortable: false,\r\n  groupable: false,\r\n};\r\nexport const atacExpCol: GridColDef<EncodeBiosample> = {\r\n  field: \"atac_experiment_accession\",\r\n  headerName: \"ATAC Exp. ID\",\r\n  sortable: false,\r\n  groupable: false,\r\n};\r\n\r\n//ENCODE File ID (plain text)\r\nexport const dnaseFileIdCol: GridColDef<EncodeBiosample> = {\r\n  field: \"dnase_file_accession\",\r\n  headerName: \"DNase File ID\",\r\n  sortable: false,\r\n  groupable: false,\r\n};\r\nexport const h3k4me3FileIdCol: GridColDef<EncodeBiosample> = {\r\n  field: \"h3k4me3_file_accession\",\r\n  headerName: \"H3K4me3 File ID\",\r\n  sortable: false,\r\n  groupable: false,\r\n};\r\nexport const h3k27acFileIdCol: GridColDef<EncodeBiosample> = {\r\n  field: \"h3k27ac_file_accession\",\r\n  headerName: \"H3K27ac File ID\",\r\n  sortable: false,\r\n  groupable: false,\r\n};\r\nexport const ctcfFileIdCol: GridColDef<EncodeBiosample> = {\r\n  field: \"ctcf_file_accession\",\r\n  headerName: \"CTCF File ID\",\r\n  sortable: false,\r\n  groupable: false,\r\n};\r\nexport const atacFileIdCol: GridColDef<EncodeBiosample> = {\r\n  field: \"atac_file_accession\",\r\n  headerName: \"ATAC File ID\",\r\n  sortable: false,\r\n  groupable: false,\r\n};\r\n\r\nexport const dnaseZscoreUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"dnaseZ\",\r\n  headerName: \"DNase Z-scores\",\r\n  valueGetter: (_, row) =>\r\n    row.dnase_experiment_accession && row.dnase_file_accession\r\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.dnase_experiment_accession}-${row.dnase_file_accession}.tsv`\r\n      : null,\r\n  renderCell: (params) =>\r\n    params.rowNode.type !== \"group\" &&\r\n    params.value && (\r\n      <DownloadButton\r\n        message={(fileSize) => `Download DNase z-score by cCRE (.tsv) - ${fileSize}`}\r\n        url={params.value}\r\n        displayName={params.row.displayname}\r\n        assay=\"DNase\"\r\n        ontology={params.row.ontology}\r\n      />\r\n    ),\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const h3k4me3ZscoreUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"h3k4me3Z\",\r\n  headerName: \"H3K4me3 Z-scores\",\r\n  valueGetter: (_, row) =>\r\n    //check if file exists to handle the two samples with unprocessed h3k4me3 experiments: GM12866_ENCDO000ABQ & neural_crest_cell_ENCDO222AAA\r\n    row.h3k4me3_experiment_accession && fileExists(row.h3k4me3_file_accession)\r\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.h3k4me3_experiment_accession}-${row.h3k4me3_file_accession}.tsv`\r\n      : null,\r\n  renderCell: (params) => {\r\n    if ([\"GM12866_ENCDO000ABQ\", \"neural_crest_cell_ENCDO222AAA\"].includes(params.row.name))\r\n      return (\r\n        <DownloadButton\r\n          disabled\r\n          message={() =>\r\n            \"This sample's H3K4me3 experiment was not run through the ENCODE Pipeline and thus z-scores are not available\"\r\n          }\r\n          url={params.value}\r\n          displayName={params.row.displayname}\r\n          assay=\"H3K4me3\"\r\n          ontology={params.row.ontology}\r\n        />\r\n      );\r\n    else if (!(params.rowNode.type === \"group\") && params.value)\r\n      return (\r\n        <DownloadButton\r\n          message={(fileSize) => `Download H3K4me3 z-score by cCRE (.tsv) - ${fileSize}`}\r\n          url={params.value}\r\n          displayName={params.row.displayname}\r\n          assay=\"H3K4me3\"\r\n          ontology={params.row.ontology}\r\n        />\r\n      );\r\n  },\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const h3k27acZscoreUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"h3k27acZ\",\r\n  headerName: \"H3K27ac Z-scores\",\r\n  valueGetter: (_, row) =>\r\n    row.h3k27ac_experiment_accession && row.h3k27ac_file_accession\r\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.h3k27ac_experiment_accession}-${row.h3k27ac_file_accession}.tsv`\r\n      : null,\r\n  renderCell: (params) =>\r\n    params.rowNode.type !== \"group\" &&\r\n    params.value && (\r\n      <DownloadButton\r\n        message={(fileSize) => `Download H3K27ac z-score by cCRE (.tsv) - ${fileSize}`}\r\n        url={params.value}\r\n        displayName={params.row.displayname}\r\n        assay=\"H3K27ac\"\r\n        ontology={params.row.ontology}\r\n      />\r\n    ),\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const ctcfZscoreUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"ctcfZ\",\r\n  headerName: \"CTCF Z-scores\",\r\n  valueGetter: (_, row) =>\r\n    row.ctcf_experiment_accession && row.ctcf_file_accession\r\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.ctcf_experiment_accession}-${row.ctcf_file_accession}.tsv`\r\n      : null,\r\n  renderCell: (params) =>\r\n    params.rowNode.type !== \"group\" &&\r\n    params.value && (\r\n      <DownloadButton\r\n        message={(fileSize) => `Download CTCF z-score by cCRE (.tsv) - ${fileSize}`}\r\n        url={params.value}\r\n        displayName={params.row.displayname}\r\n        assay=\"CTCF\"\r\n        ontology={params.row.ontology}\r\n      />\r\n    ),\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const atacZscoreUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"atacZ\",\r\n  headerName: \"ATAC Z-scores\",\r\n  valueGetter: (_, row) =>\r\n    row.atac_experiment_accession && row.atac_file_accession\r\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.atac_experiment_accession}-${row.atac_file_accession}.tsv`\r\n      : null,\r\n  renderCell: (params) =>\r\n    params.rowNode.type !== \"group\" &&\r\n    params.value && (\r\n      <DownloadButton\r\n        message={(fileSize) => `Download ATAC z-score by cCRE (.tsv) - ${fileSize}`}\r\n        url={params.value}\r\n        displayName={params.row.displayname}\r\n        assay=\"ATAC\"\r\n        ontology={params.row.ontology}\r\n      />\r\n    ),\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const dnaseSignalUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"dnase_signal_url\",\r\n  headerName: \"DNase Signal\",\r\n  renderCell: (params) =>\r\n    params.rowNode.type !== \"group\" &&\r\n    params.value && (\r\n      <DownloadButton\r\n        message={(fileSize) => `Download DNase Signal (.bigWig) - ${fileSize}`}\r\n        url={params.value}\r\n        displayName={params.row.displayname}\r\n        assay=\"DNase\"\r\n        ontology={params.row.ontology}\r\n      />\r\n    ),\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const h3k4me3SignalUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"h3k4me3_signal_url\",\r\n  headerName: \"H3K4me3 Signal\",\r\n  valueGetter: (value, row) => (row.h3k4me3_file_accession === \"NA\" ? null : value),\r\n  renderCell: (params) => {\r\n    if ([\"GM12866_ENCDO000ABQ\", \"neural_crest_cell_ENCDO222AAA\"].includes(params.row.name))\r\n      return (\r\n        <DownloadButton\r\n          disabled\r\n          message={() =>\r\n            \"This sample's H3K4me3 experiment was not run through the ENCODE Pipeline and thus the signal file is not available\"\r\n          }\r\n          url={params.value}\r\n          displayName={params.row.displayname}\r\n          assay=\"H3K4me3\"\r\n          ontology={params.row.ontology}\r\n        />\r\n      );\r\n    else if (!(params.rowNode.type === \"group\") && params.value)\r\n      return (\r\n        <DownloadButton\r\n          message={(fileSize) => `Download H3K4me3 Signal (.bigWig) - ${fileSize}`}\r\n          url={params.value}\r\n          displayName={params.row.displayname}\r\n          assay=\"H3K4me3\"\r\n          ontology={params.row.ontology}\r\n        />\r\n      );\r\n  },\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const h3k27acSignalUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"h3k27ac_signal_url\",\r\n  headerName: \"H3K27ac Signal\",\r\n  renderCell: (params) =>\r\n    params.rowNode.type !== \"group\" &&\r\n    params.value && (\r\n      <DownloadButton\r\n        message={(fileSize) => `Download H3K27ac Signal (.bigWig) - ${fileSize}`}\r\n        url={params.value}\r\n        displayName={params.row.displayname}\r\n        assay=\"H3K27ac\"\r\n        ontology={params.row.ontology}\r\n      />\r\n    ),\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const ctcfSignalUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"ctcf_signal_url\",\r\n  headerName: \"CTCF Signal\",\r\n  renderCell: (params) =>\r\n    params.rowNode.type !== \"group\" &&\r\n    params.value && (\r\n      <DownloadButton\r\n        message={(fileSize) => `Download CTCF Signal (.bigWig) - ${fileSize}`}\r\n        url={params.value}\r\n        displayName={params.row.displayname}\r\n        assay=\"CTCF\"\r\n        ontology={params.row.ontology}\r\n      />\r\n    ),\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const atacSignalUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"atac_signal_url\",\r\n  headerName: \"ATAC Signal\",\r\n  renderCell: (params) =>\r\n    params.rowNode.type !== \"group\" &&\r\n    params.value && (\r\n      <DownloadButton\r\n        message={(fileSize) => `Download ATAC Signal (.bigWig) - ${fileSize}`}\r\n        url={params.value}\r\n        displayName={params.row.displayname}\r\n        assay=\"ATAC\"\r\n        ontology={params.row.ontology}\r\n      />\r\n    ),\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const chromHmmUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"chromhmm_url\",\r\n  headerName: \"ChromHMM States\",\r\n  renderCell: (params) =>\r\n    params.rowNode.type !== \"group\" &&\r\n    params.value && (\r\n      <DownloadButton\r\n        message={(fileSize) => `Download ChromHMM States (.bigBed) - ${fileSize}`}\r\n        url={params.value}\r\n        displayName={params.row.displayname}\r\n        assay=\"ChromHMM\"\r\n        ontology={params.row.ontology}\r\n      />\r\n    ),\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const ccreBedUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"bedurl\",\r\n  headerName: \"cCREs (.bed)\",\r\n  align: \"center\",\r\n  valueGetter: (_, row, __, apiRef) => {\r\n    if (isAutogeneratedRow(row)) {\r\n      const id = gridRowIdSelector(apiRef, row);\r\n      const rowNode = gridRowNodeSelector(apiRef, id);\r\n      const isGroupingByOntology = rowNode.type === \"group\" && rowNode.groupingField === \"ontology\";\r\n      if (isGroupingByOntology && typeof rowNode.groupingKey === \"string\") {\r\n        // Check the first child row's assembly\r\n        const childRowIds = rowNode.children;\r\n        if (childRowIds && childRowIds.length > 0) {\r\n          const firstChildData = gridRowSelector(apiRef, childRowIds[0]);\r\n          if (firstChildData?.assembly === \"GRCh38\") {\r\n            return getAvailableFiles(rowNode.groupingKey)\r\n              .map((x) => `https://downloads.wenglab.org/${x.filename}`)\r\n              .join(\",\");\r\n          }\r\n        }\r\n      }\r\n      return null;\r\n    }\r\n    const signalIDs = [\r\n      row.dnase_file_accession,\r\n      row.h3k4me3_file_accession,\r\n      row.h3k27ac_file_accession,\r\n      row.ctcf_file_accession,\r\n    ].filter((id) => id !== null && id !== undefined && id !== \"NA\");\r\n    if (!signalIDs.length) return null // aka is ATAC-only\r\n    return `https://downloads.wenglab.org/Registry-V4/${signalIDs.join(\"_\")}.bed`;\r\n  },\r\n  renderCell: (params) => {\r\n    if (params.rowNode.type === \"group\") {\r\n      if (params.rowNode.groupingField === \"ontology\" && params.value) {\r\n        const ontology = (params.rowNode.groupingKey as string) ?? \"\";\r\n        return <AggregateDownloadButton ontology={ontology} />;\r\n      }\r\n      return null;\r\n    }\r\n    return (\r\n      <DownloadButton\r\n        message={(fileSize) =>\r\n          params.value ? `Download cCREs (.bed) - ${fileSize}` : \"cCREs only available for samples with DNase, H3K4me3, H3H27ac, and/or CTCF data\"\r\n        }\r\n        url={params.value}\r\n        disabled={!params.value} //aka is ATAC-only\r\n        displayName={params.row.displayname}\r\n        assay=\"cCREs\"\r\n        ontology={params.row.ontology}\r\n      />\r\n    );\r\n  },\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const ccreBigBedUrlCol: GridColDef<EncodeBiosample> = {\r\n  field: \"bigbedurl\",\r\n  headerName: \"cCREs (.bigBed)\",\r\n  align: 'center',\r\n  valueGetter: (value: string, row) => {\r\n    if (row.name === \"GM12866_ENCDO000ABQ\") return null //This sample has no cCREs file\r\n    if (row.name === \"neural_crest_cell_ENCDO222AAA\") return value.replaceAll('_NA_', '_') //The url in file includes \"NA\" H3K4me3 file ID\r\n    else return value\r\n  },\r\n  renderCell: (params) =>\r\n    params.rowNode.type !== \"group\" && (\r\n      <DownloadButton\r\n        message={(fileSize) =>\r\n          params.value ? `Download cCREs (.bigBed) - ${fileSize}` : \"cCREs only available for samples with DNase, H3K4me3, H3H27ac, and/or CTCF data\"\r\n        }\r\n        url={params.value}\r\n        disabled={!params.value} //aka is ATAC-only\r\n        displayName={params.row.displayname}\r\n        assay=\"cCREs\"\r\n        ontology={params.row.ontology}\r\n      />\r\n    ),\r\n  groupable: false,\r\n  sortable: false,\r\n};\r\n\r\nexport const rnaSeqCheckCol: GridColDef<EncodeBiosample> = {\r\n  field: \"rnaSeq\",\r\n  headerName: \"Has RNA Seq\",\r\n  type: \"boolean\",\r\n  valueGetter: (_, row) => (isAutogeneratedRow(row) ? null : !!row?.rna_seq_tracks?.length),\r\n  renderCell: (params) => {\r\n    if (params.value) {\r\n      return <Check />;\r\n    } else return null;\r\n  },\r\n};\r\n\r\nexport const columns: GridColDef<EncodeBiosample>[] = [\r\n  displayNameCol,\r\n  assaysCol,\r\n  ontologyCol,\r\n  sampleTypeCol,\r\n  lifeStageCol,\r\n  collectionCol,\r\n  ccreBedUrlCol,\r\n  ccreBigBedUrlCol,\r\n  dnaseExpCol,\r\n  dnaseFileIdCol,\r\n  dnaseZscoreUrlCol,\r\n  dnaseSignalUrlCol,\r\n  atacExpCol,\r\n  atacFileIdCol,\r\n  atacZscoreUrlCol,\r\n  atacSignalUrlCol,\r\n  h3k4me3ExpCol,\r\n  h3k4me3FileIdCol,\r\n  h3k4me3ZscoreUrlCol,\r\n  h3k4me3SignalUrlCol,\r\n  h3k27acExpCol,\r\n  h3k27acFileIdCol,\r\n  h3k27acZscoreUrlCol,\r\n  h3k27acSignalUrlCol,\r\n  ctcfExpCol,\r\n  ctcfFileIdCol,\r\n  ctcfZscoreUrlCol,\r\n  ctcfSignalUrlCol,\r\n  chromHmmUrlCol,\r\n  rnaSeqCheckCol,\r\n];\r\n\r\n/**\r\n * useful for resetting visible columns by spreading this then overriding with visible cols\r\n */\r\nexport const allColsHidden = {\r\n  displayname: false,\r\n  assays: false,\r\n  ontology: false,\r\n  sampleType: false,\r\n  lifeStage: false,\r\n  collection: false,\r\n  bedurl: false,\r\n  bigbedurl: false,\r\n  dnase_experiment_accession: false,\r\n  dnase_file_accession: false,\r\n  dnaseZ: false,\r\n  dnase_signal_url: false,\r\n  atac_experiment_accession: false,\r\n  atac_file_accession: false,\r\n  atacZ: false,\r\n  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package/dist/ui-components.es110.js

@@ -1,24 +1,6 @@
-import s from "./ui-components.es117.js";
-const t = {
-  active: "active",
-  checked: "checked",
-  completed: "completed",
-  disabled: "disabled",
-  error: "error",
-  expanded: "expanded",
-  focused: "focused",
-  focusVisible: "focusVisible",
-  open: "open",
-  readOnly: "readOnly",
-  required: "required",
-  selected: "selected"
-};
-function o(d, e, r = "Mui") {
-  const a = t[e];
-  return a ? `${r}-${a}` : `${s.generate(d)}-${e}`;
-}
+import e from "./ui-components.es226.js";
+const o = e;
 export {
-  o as default,
-  t as globalStateClasses
+  o as default
 };
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package/dist/ui-components.es110.js.map

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+{"version":3,"file":"ui-components.es110.js","sources":["../../../node_modules/.pnpm/@mui+material@7.3.9_@emotio_5efc65b7a21bb615fd4ee8d4bf58b896/node_modules/@mui/material/esm/utils/memoTheme.js"],"sourcesContent":["import { unstable_memoTheme } from '@mui/system';\nconst memoTheme = unstable_memoTheme;\nexport default memoTheme;"],"names":["memoTheme","unstable_memoTheme"],"mappings":";AACK,MAACA,IAAYC;","x_google_ignoreList":[0]}

package/dist/ui-components.es111.js

@@ -1,11 +1,7 @@
-import s from "./ui-components.es110.js";
-function l(r, a, i = "Mui") {
-  const t = {};
-  return a.forEach((e) => {
-    t[e] = s(r, e, i);
-  }), t;
+function e(t) {
+  return t !== "ownerState" && t !== "theme" && t !== "sx" && t !== "as";
 }
 export {
-  l as default
+  e as default
 };
 //# sourceMappingURL=ui-components.es111.js.map

package/dist/ui-components.es111.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es111.js","sources":["../../../node_modules/.pnpm/@mui+utils@7.3.9_@types+react@19.2.14_react@19.2.4/node_modules/@mui/utils/esm/generateUtilityClasses/generateUtilityClasses.js"],"sourcesContent":["import generateUtilityClass from \"../generateUtilityClass/index.js\";\nexport default function generateUtilityClasses(componentName, slots, globalStatePrefix = 'Mui') {\n  const result = {};\n  slots.forEach(slot => {\n    result[slot] = generateUtilityClass(componentName, slot, globalStatePrefix);\n  });\n  return result;\n}"],"names":["generateUtilityClasses","componentName","slots","globalStatePrefix","result","slot","generateUtilityClass"],"mappings":";AACe,SAASA,EAAuBC,GAAeC,GAAOC,IAAoB,OAAO;AAC9F,QAAMC,IAAS,CAAA;AACf,SAAAF,EAAM,QAAQ,CAAAG,MAAQ;AACpB,IAAAD,EAAOC,CAAI,IAAIC,EAAqBL,GAAeI,GAAMF,CAAiB;AAAA,EAC5E,CAAC,GACMC;AACT;","x_google_ignoreList":[0]}
+{"version":3,"file":"ui-components.es111.js","sources":["../../../node_modules/.pnpm/@mui+material@7.3.9_@emotio_5efc65b7a21bb615fd4ee8d4bf58b896/node_modules/@mui/material/esm/styles/slotShouldForwardProp.js"],"sourcesContent":["// copied from @mui/system/createStyled\nfunction slotShouldForwardProp(prop) {\n  return prop !== 'ownerState' && prop !== 'theme' && prop !== 'sx' && prop !== 'as';\n}\nexport default slotShouldForwardProp;"],"names":["slotShouldForwardProp","prop"],"mappings":"AACA,SAASA,EAAsBC,GAAM;AACnC,SAAOA,MAAS,gBAAgBA,MAAS,WAAWA,MAAS,QAAQA,MAAS;AAChF;","x_google_ignoreList":[0]}

package/dist/ui-components.es112.js

@@ -1,24 +1,6 @@
-import { j as n } from "./ui-components.es16.js";
-import e from "./ui-components.es223.js";
-import p from "./ui-components.es224.js";
-function x(r) {
-  return function(t) {
-    return (
-      // Pigment CSS `globalCss` support callback with theme inside an object but `GlobalStyles` support theme as a callback value.
-      /* @__PURE__ */ n.jsx(p, {
-        styles: typeof r == "function" ? (o) => r({
-          theme: o,
-          ...t
-        }) : r
-      })
-    );
-  };
-}
-function a() {
-  return e;
-}
+import r from "./ui-components.es117.js";
+const s = (o) => !o || !r(o);
 export {
-  x as globalCss,
-  a as internal_createExtendSxProp
+  s as default
 };
 //# sourceMappingURL=ui-components.es112.js.map

package/dist/ui-components.es112.js.map

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package/dist/ui-components.es113.js

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-import i from "./ui-components.es110.js";
-import r from "./ui-components.es111.js";
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-  return i("MuiTypography", t);
+function n(e) {
+  return typeof e.main == "string";
+}
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+  if (!n(e))
+    return !1;
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+      return !1;
+  return !0;
+}
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package/dist/ui-components.es114.js

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package/dist/ui-components.es115.js

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-import o from "./ui-components.es111.js";
-const t = o("MuiBox", ["root"]);
+import e from "./ui-components.es106.js";
+import l from "./ui-components.es107.js";
+function t(r) {
+  return e("MuiSlider", r);
+}
+const i = l("MuiSlider", ["root", "active", "colorPrimary", "colorSecondary", "colorError", "colorInfo", "colorSuccess", "colorWarning", "disabled", "dragging", "focusVisible", "mark", "markActive", "marked", "markLabel", "markLabelActive", "rail", "sizeSmall", "thumb", "thumbColorPrimary", "thumbColorSecondary", "thumbColorError", "thumbColorSuccess", "thumbColorInfo", "thumbColorWarning", "track", "trackInverted", "trackFalse", "thumbSizeSmall", "valueLabel", "valueLabelOpen", "valueLabelCircle", "valueLabelLabel", "vertical"]);
 export {
-  t as default
+  i as default,
+  t as getSliderUtilityClass
 };
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package/dist/ui-components.es116.js

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+import a from "./ui-components.es224.js";
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 }
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